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DOE OSTI2025

Yield From Iowa's First Commercial Miscanthus Fields: Implications of Spatial Variability for Productivity and Sustainability Beyond Research Plots

The cultivation of sterile giant miscanthus (Miscanthus × giganteus, M × g) for bioenergy and bioproducts has expanded into grain-cropped land in the United States (US) as local markets developed for this high-yielding perennial grass (10–30 Mg DM ha −1 ). However, the magnitude of spatial and temporal variability in yield within US Corn Belt fields, along with impacts on economic return and sustainable land management, is poorly understood. This study established a diagnostic model relating remote sensing-derived vegetation indices to ground truth data from 105 hand-harvested stem biomass samples, which were strategically selected to represent the full range of vegetation index observations. The high-resolution satellite-sensed vegetation indices captured > 90% of the yield variation measured within fields. This model was then used to predict yield variability and assess economic performance across four of the first commercial M × g fields in the Corn Belt state of Iowa, US. Significant spatial variability in biomass dry matter (DM) yields (9.3–18.1 Mg DM ha −1 ) and net profits ($\$$83 to $\$$1211.5 ha −1 ) was observed. All fields were profitable in all site-years. When low profit occurred, it was explained by limited management experience of the crop in Iowa. The breakeven yield at a selling price of $\$$130 Mg −1 varied from 9.0–12.1 Mg ha −1 at 15% moisture content (7.6–10.3 Mg DM ha −1 ). Breakeven prices ranged from $\$$73 to $\$$122.4 Mg −1 , matching ranges used in the Department of Energy Billion Ton Report (US Department of Energy, 2023). Notably, M × g yield and profits were commensurate with grain crops particularly with favorable precipitation. This study provides insight on the M × g management “learning curve”, performance on marginal land and in drought conditions, and demonstrates that addressing yield gaps, reducing costs, and implementing precision agriculture strategies can enhance profitability. These findings emphasize the value of remote sensing technologies in guiding sustainable and competitive commercial-scale M × g production.

60 APPLIED LIFE SCIENCES↗

NASA NTRS2010

Utilizing In Situ Directional Hyperspectral Measurements to Validate Bio-Indicator Simulations for a Corn Crop Canopy

Two radiative transfer canopy models, SAIL and the two-layer Markov-Chain Canopy Reflectance Model (MCRM), were coupled with in situ leaf optical properties to simulate canopy-level spectral band ratio vegetation indices with the focus on the photochemical reflectance index in a cornfield. In situ hyperspectral measurements were made at both leaf and canopy levels. Leaf optical properties were obtained from both sunlit and shaded leaves. Canopy reflectance was acquired for eight different relative azimuth angles (psi) at three different view zenith angles (Theta (sub v)), and later used to validate model outputs. Field observations of photochemical reflectance index (PRI) for sunlit leaves exhibited lower values than shaded leaves, indicating higher light stress. Canopy PRI expressed obvious sensitivity to viewing geometry, as a function of both Theta (sub v) and psi . Overall, simulations from MCRM exhibited better agreements with in situ values than SAIL. When using only sunlit leaves as input, the MCRM-simulated PRI values showed satisfactory correlation and RMSE, as compared to in situ values. However, the performance of the MCRM model was significantly improved after defining a lower canopy layer comprised of shaded leaves beneath the upper sunlit leaf layer. Four other widely used band ratio vegetation indices were also studied and compared with the PRI results. MCRM simulations were able to generate satisfactory simulations for these other four indices when using only sunlit leaves as input; but unlike PRI, adding shaded leaves did not improve the performance of MCRM. These results support the hypothesis that the PRI is sensitive to physiological dynamics while the others detect static factors related to canopy structure. Sensitivity analysis was performed on MCRM in order to better understand the effects of structure related parameters on the PRI simulations. Leaf area index (LAI) showed the most significant impact on MCRM-simulated PRI among the parameters studied. This research shows the importance of hyperspectral and narrow band sensor studies, and especially the necessity of including the green wavelengths (e.g., 531 nm) on satellites proposing to monitor carbon dynamics of terrestrial ecosystems.

Cheng, Yen-Ben↗

NASA NTRS1990

Satellite remote sensing of primary production in the Sahel using NOAA AVHRR 1981-1988

Field measurements of primary production in semiarid grasslands in three Sahelian countries over a period of 8 years are analyzed in conjunction with multitemporal sums of vegetation indices derived from the NOAA spacecraft's Advanced Very High Resolution Radiometer. The results demonstrate that there is a strong linear relationship between the satellite observations of vegetation indices and the primary production in the range 0-3,000 kg/ha. The confidence intervals of estimation of production were in the range + or - 61-161 kg/ha.

Prince, Stephen D.↗

NASA NTRS1992

Directional and temporal variability of the APAR/VI relationships - The case of a sunflower canopy

Detailed biomass and structure measurements as well as photosynthetically active radiation (PAR) balance and bidirectional and polarized reflectances in various wavebands from 450 nm to 1750 nm have been conducted over a sunflower canopy in France. Preliminary results show that the vegetation indices (NDVI or TSAVI) computed from the red and near-infrared reflectances exhibit strong directional and temporal (variation with the sun zenith angle) features. The relationship between the vegetation indices and the PAR fraction absorbed or intercepted by the canopy is likely to vary greatly with these factors.

Baret, F.↗

NASA NTRS1991

Remote sensing and landslide hazard assessment

Remotely acquired multispectral data are used to improve landslide hazard assessments at all scales of investigation. A vegetation map produced from automated interpretation of TM data is used in a GIS context to explore the effect of vegetation type on debris flow occurrence in preparation for inclusion in debris flow hazard modeling. Spectral vegetation indices map spatial patterns of grass senescence which are found to be correlated with soil thickness variations on hillslopes. Grassland senescence is delayed over deeper, wetter soils that are likely debris flow source areas. Prediction of actual soil depths using vegetation indices may be possible up to some limiting depth greater than the grass rooting zone. On forested earthflows, the slow slide movement disrupts the overhead timber canopy, exposes understory vegetation and soils, and alters site spectral characteristics. Both spectral and textural measures from broad band multispectral data are successful at detecting an earthflow within an undisturbed old-growth forest.

Mckean, J.↗

NASA NTRS1989

Evapotranspiration from combined reflected solar and emitted terrestrial radiation - Preliminary FIFE results from AVHRR data

The relation between remotely sensed spectral vegetation indices and thermal IR measurements is studied. Land surface evapotranspiration is evaluated based on this relationship. Analysis of the AVHRR data, obtained in Kansas in 1987, reveal a strong correlation between the spectral vegetation indices and surface temperature and this relation covaries with surface moisture conditions. It is noted that the relation between remotely sensed measurements of canopy green foliage and surface temperature is useful for examining variations in the interface thermal inertia and energy balance Bowen ratio.

Goward, S. N.↗

NASA NTRS2023

Structural Complexity Biases Vegetation Greenness Measures

Vegetation ‘greenness’ characterized by spectral vegetation indices (VIs) is an integrative measure of vegetation leaf abundance, biochemical properties and pigment composition. Surprisingly, satellite observations reveal that several major VIs over the US Corn Belt are higher than those over the Amazon rainforest, despite the forests having a greater leaf area. This contradicting pattern underscores the pressing need to understand the underlying drivers and their impacts to prevent misinterpretations. Here we show that macroscale shadows cast by complex forest structures result in lower greenness measures compared with those cast by structurally simple and homogeneous crops. The shadow-induced contradictory pattern of VIs is inevitable because most Earth-observing satellites do not view the Earth in the solar direction and thus view shadows due to the sun–sensor geometry. The shadow impacts have important implications for the interpretation of VIs and solar-induced chlorophyll fluorescence as measures of global vegetation changes. For instance, a land-conversion process from forests to crops over the Amazon shows notable increases in VIs despite a decrease in leaf area. Our findings highlight the importance of considering shadow impacts to accurately interpret remotely sensed VIs and solar-induced chlorophyll fluorescence for assessing global vegetation and its changes.

Vegetation indices↗

NASA NTRS2021

Classifying Forest Type in the National Forest Inventory Context with Airborne Hyperspectral and Lidar Data

Forest structure and composition regulate a range of ecosystem services, including biodiversity, water and nutrient cycling, and wood volume for resource extraction. Forest type is an important metric measured in the US Forest Service Forest Inventory and Analysis (FIA) program, the national forest inventory of the USA. Forest type information can be used to quantify carbon and other forest resources within specific domains to support ecological analysis and forest management decisions, such as managing for disease and pests. In this study, we developed a methodology that uses a combination of airborne hyperspectral and lidar data to map FIA-defined forest type between sparsely sampled FIA plot data collected in interior Alaska. To determine the best classification algorithm and remote sensing data for this task, five classification algorithms were tested with six different combinations of raw hyperspectral data, hyperspectral vegetation indices, and lidar-derived canopy and topography metrics. Models were trained using forest type information from 632 FIA subplots collected in interior Alaska. Of the thirty model and input combinations tested, the random forest classification algorithm with hyperspectral vegetation indices and lidar-derived topography and canopy height metrics had the highest accuracy (78% overall accuracy). This study supports random forest as a powerful classifier for natural resource data. It also demonstrates the benefits from combining both structural (lidar) and spectral (imagery) data for forest type classification.

random forest↗

DOE OSTI2022

LAI, EVI, NDVI, and kNDVI in 23 pantropical forests affected by 21 cyclones

Statement of purpose: Cyclones alter the function and composition of tropical forests, making effects of intensifying cyclones on carbon-rich forests a critical topic of study. Here, we quantified cyclone-induced damage and recovery of 21 cyclone disturbances affecting 23 pantropical forest sites between 1988-2017 utilizing leaf area index (LAI), enhanced vegetation index (EVI), normalized difference vegetation index (NDVI), and transformed NDVI (kNDVI) values from Google Earth Engine. Field observations collected in a meta-analysis (Bomfim et al., 2022, in review) were used to ground-truth and test effects of soil resource availability and disturbance factors on damage and recovery. This meta-analysis also served as the basis to begin vegetation index extraction, utilizing unique site and date combinations, from tropical forests effect by cyclone disturbances. We began collecting NDVI (5km resolution) from the NOAA Climate Data Record (CDR) of AVHRR Normalized Difference Vegetation Index (NDVI), Version 5 data product (Vermote, 2019) for all case studies included, 42. Next, we began extracting Landsat data from Landsat 4, 5, and 8, courtesy of the U.S. Geological Survey, in search of higher resolution data. We selected a 3 by 3 Landsat pixel area, leading to a 90m resolution data extraction. The specific imagery used includes Landsat 4 USGS Landsat 4 TM Collection 1 Tier 1 TOA (top of atmosphere) Reflectance, Landsat 5 USGS Landsat 5 TM (thematic mapper) Collection 1 Tier 1 TOA Reflectance, and Landsat 8 USGS Landsat 8 Collection 1 Tier 1 TOA Reflectance. Within Google Earth Engine, we selected the date and location (latitude and longitude), calculated NDVI, kNDVI, and EVI utilizing Landsat bands (see metadata_NGEE-tropics_cyclones), and extracted post- and pre-cyclone values for each case study to calculate cyclone-induced change in the vegetative index. Due to limited spatial resolution of Landsat remote sensing data, MODIS products were investigated next. First, the MOD13Q1.006 Terra Vegetation Indices 16-Day Global 250m product was used to extract 250m EVI and NDVI (Didan, 2015) and then the MCD15A3H.006 MODIS Leaf Area Index/FPAR 4-Day Global 500m product product was used to extract LAI 500m (Myneni et al., 2015). Pre- and post-cyclone values, change in the vegetative index, and standard deviation for all values are included in the main csv (see case_study_data.csv) for all vegetative indices collected, including LAI 500m, EVI 250m, NDVI 250m, NDVI 90m, kNDVI 90m, EVI 90m, and NDVI 5km. Lastly, recovery values were calculated utilizing a standardization method (see metadata_NGEE-tropics_cyclones) and recovery values for MODIS (see MODIS_recovery.csv) and Landsat (Landsat_recovery.csv) data are included.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2021

Sustainability Trait Modeling of Field-Grown Switchgrass ( Panicum virgatum ) Using UAV-Based Imagery

Unmanned aerial vehicles (UAVs) provide an intermediate scale of spatial and spectral data collection that yields increased accuracy and consistency in data collection for morphological and physiological traits than satellites and expanded flexibility and high-throughput compared to ground-based data collection. In this study, we used UAV-based remote sensing for automated phenotyping of field-grown switchgrass (Panicum virgatum), a leading bioenergy feedstock. Using vegetation indices calculated from a UAV-based multispectral camera, statistical models were developed for rust disease caused by Puccinia novopanici, leaf chlorophyll, nitrogen, and lignin contents. For the first time, UAV remote sensing technology was used to explore the potentials for multiple traits associated with sustainable production of switchgrass, and one statistical model was developed for each individual trait based on the statistical correlation between vegetation indices and the corresponding trait. Also, for the first time, lignin content was estimated in switchgrass shoots via UAV-based multispectral image analysis and statistical analysis. The UAV-based models were verified by ground-truthing via correlation analysis between the traits measured manually on the ground-based with UAV-based data. The normalized difference red edge (NDRE) vegetation index outperformed the normalized difference vegetation index (NDVI) for rust disease and nitrogen content, while NDVI performed better than NDRE for chlorophyll and lignin content. Overall, linear models were sufficient for rust disease and chlorophyll analysis, but for nitrogen and lignin contents, nonlinear models achieved better results. As the first comprehensive study to model switchgrass sustainability traits from UAV-based remote sensing, these results suggest that this methodology can be utilized for switchgrass high-throughput phenotyping in the field.

60 APPLIED LIFE SCIENCES↗

NASA NTRS1989

NOAA AVHRR and its uses for rainfall and evapotranspiration monitoring

NOAA-7 Advanced Very High Resolution Radiometer (AVHRR) Global Vegetation Indices (GVI) were used during the 1986 rainy season (June-September) over Senegal to monitor rainfall. The satellite data were used in conjunction with ground-based measurements so as to derive empirical relationships between rainfall and GVI. The regression obtained was then used to map the total rainfall corresponding to the growing season, yielding good results. Normalized Difference Vegetation Indices (NDVI) derived from High Resolution Picture Transmission (HRPT) data were also compared with actual evapotranspiration (ET) data and proved to be closely correlated with it with a time lapse of 20 days.

Kerr, Yann H.↗

DOE OSTI2022

Sustainability Trait Modeling of Field-Grown Switchgrass (Panicum virgatum) Using UAV-Based Imagery

CBI↗

NASA NTRS2018

Land Surface Reflectances from Geostationary Sensors

GEONEX is a processing pipeline that produces a suite of satellite land surface products using data streams from the latest geostationary (GEO) sensors including the GOES016/ABI and the Himawari-8/AHI. The suite, created collaboratively by scientists from NASA and NOAA, includes top-of-atmosphere (TOA) reflectances, land surface reflectances (LSRs), vegetation indices, LAI/fPAR, and other downstream products. As a key component of the GEONEX product processing, we have adapted the Multi-Angle Implementation of Atmospheric Correction (MAIAC) algorithm to produce LSRs from the TOA data. Because the algorithm depends on building "stacks" of images, we first run internal geo-registration checks to ensure geo-spatial accuracy and consistency of the input (L1B) data before transferring them from the geostationary projection into a tile system in geographic grids. Scan-time is inferred from metadata and applied to calculate the sun-sensor angles for each grid cell. The MAIAC algorithm is run to detect clouds/shadows, estimate aerosol optical thickness (AOT), perform atmospheric corrections, and generate LSRs. We have processed 18-months (from 2016/04 onward) of AHI data over East Asia and Oceania at a 10-minute time step and 10-months (from 2018/01 onward) of ABI data over North and South Americas at a 15-minute time step. As a verification measure, we compare the GEONEX (AHI/ABI) surface reflectances with the standard MODIS products (MOD09GA) and the MODIS MAIAC products over pixels that have similar sun-view geometries. The results indicate general linear relationships between GEONEX and corresponding MODIS LSRs. In particular, the RMSEs between GEONEX and MOD09 data are comparable to those between MOD09 and MODIS MAIAC products, suggesting that the uncertainties of GEONEX LSRs fall into an acceptable range. However, direct comparisons of LSRs over pixels with different sun-view angles are not as straightforward and require more modeling efforts to correct the directional effects. Evaluation of such angular influences on the downstream products (e.g., vegetation indices) is also under investigation.

Geostationary satellite; Remote Sensing; Atmospher↗

DOE OSTI2025

Contributions of vegetation heterogeneity within tower footprint to CO 2 flux estimations through graph neural network modeling

Net ecosystem exchange of CO 2 (Fc) measured directly by eddy covariance towers is based on various assumptions, including large, flat and homogenous land cover type. In reality, often a tower site is not large enough for flux measurements, and landscapes consist of patches of different land cover types within the flux footprint. In addition, some portions of fluxes are contributed by different cover types when a footprint exceeds the size of the target ecosystem. The contributions of non-dominant patches to Fc are often ignored. Here, in this study, we propose a novel integrated modeling framework that combines random forest (RF) and XGBoost with a residual correction module based on a deep graph convolutional network (DeeperGCN) to simulate Fc for seven flux measurement sites in southwest Michigan. High-resolution remote sensing vegetation indices, soil properties, meteorological variables, and footprint-weighted spatial features were used as model inputs at three spatial resolutions (10 m, 20 m, 30 m), and their importance in predicting Fc with DeeperGCN was assessed. We found that residual correction using DeeperGCN significantly improved prediction accuracy, with the R 2 increasing from 0.9098 to 0.9479 for RF and from 0.9235 to 0.9433 for XGBoost. At site level, the maximum improvement in R 2 reached 0.1617. Paired t-tests confirmed that these improvements were statistically significant (p < 0.05). Among all predictors, leaf area index and incoming shortwave radiation emerged as the dominant drivers of spatial residual variation, followed by precipitation, relative humidity, and selected vegetation indices. The 20 m resolution yielded the best balance between model performance and computational efficiency. In conclusion, our modeling framework effectively captures both spatial heterogeneity and nonlinear interactions, offering a robust solution for spatially explicit flux modeling in structurally diverse ecosystems beyond the study sites.

footprint model↗

DOE OSTI2021

Tower-Based Remote Sensing Reveals Mechanisms Behind a Two-phased Spring Transition in a Mixed-Species Boreal Forest

The boreal forest is a major contributor to the global climate system, therefore, reducing uncertainties in how the forest will respond to a changing climate is critical. One source of uncertainty is the timing and drivers of the spring transition. Remote sensing can provide important information on this transition, but persistent foliage greenness, seasonal snow cover, and a high prevalence of mixed forest stands (both deciduous and evergreen species) complicate interpretation of these signals. We collected tower-based remotely sensed data (reflectance-based vegetation indices and Solar-Induced Chlorophyll Fluorescence [SIF]), stem radius measurements, gross primary productivity, and environmental conditions in a boreal mixed forest stand. Evaluation of this data set shows a two-phased spring transition. The first phase is the reactivation of photosynthesis and transpiration in evergreens, marked by an increase in relative SIF, and is triggered by thawed stems, warm air temperatures, and increased available soil moisture. The second phase is a reduction in bulk photoprotective pigments in evergreens, marked by an increase in the Chlorophyll-Carotenoid Index. Deciduous leaf-out occurs during this phase, marked by an increase in all remotely sensed metrics. The second phase is controlled by soil thaw. Our results demonstrate that remote sensing metrics can be used to detect specific physiological changes in boreal tree species during the spring transition. The two-phased transition explains inconsistencies in remote sensing estimates of the timing and drivers of spring recovery. Our results imply that satellite-based observations will improve by using a combination of vegetation indices and SIF, along with species distribution information.

54 ENVIRONMENTAL SCIENCES↗

NASA NTRS1991

Calculated sensitivities of several optical radiometric indices for vegetation canopies

The present study employs a radiative transfer model for a vegetation canopy to compute several quantities used in remote sensing applications and to determine the sensitivity of these radiometric quantities to several of the important problem parameters. Attention is given to the ratio of near IR to visible reflected intensities in the nadir direction, the ratio of the fraction of incident energy reflected in the near IR to that in the visible, the normalized difference between the near IR and visible nadir-reflected intensities, and the visible intensity transmitted in a given downward direction. A realistic radiative transfer model is proposed for calculating these radiometric quantities. With these models, the sensitivity of the reflected and transmitted quantities to various canopy and illumination conditions are then determined. The sensitivity of the calculated quantities are presented as a function of the leaf area index of the canopy, and, for the reflected quantities, also as a function of the fraction of visible light absorbed in the canopy.

Shultis, J. K.↗

NASA NTRS2019

The Use of Landsat 8 and Sentinel-2 Data and Meterological Observations for Winter Wheat Yield Assessment

This study focuses on winter wheat yield assessment from NASA's Harmonized Landsat Sentinel-2 (HLS) product and meteorological observations through phenological fitting. Vegetation indices (VIs), namely difference vegetation index (DVI), normalized difference vegetation index (NDVI) and enhanced vegetation index (EVI2), extracted from satellite optical data, are fitted per pixel against accumulated growing degree days (AGDD) using a quadratic function. Accumulated VIs are correlated against winter wheat yields. Results show a better performance from DVI compared to NDVI and EVI2.

Skakun, S.↗

NASA NTRSDate not supplied

Classifying Agnostic Biosignatures using Raman, VNIR, and Elemental Data

How can we use our current wealth of terrestrial data, encompassing biogenic and abiogenic systems, to determine the distinguishing properties of life? SCOBI (Statistical Classification of Biosignature Information) uses machine learning techniques to algorithmically identify combinations of measurements that are “indicative of life”. A set of ~1000 observations, comprising elemental abundance, isotopic fractionation, VNIR reflectance, and (in progress) Raman spectra, have been assembled from existing literature and databases. The observations cover systems classified as “indicative alive” (e.g., cells, vegetation), “indicative non-alive” (e.g., fossils, teeth), “mixed indicative” (e.g., soil, pond water), or “non-indicative” (e.g., rocks, meteorites). VNIR data was preprocessed by linear interpolation from 400-2100 nm and smoothed with a Savitzky-Golay filter. To limit the amount of Earth-biochemistry-specific (non-agnostic) information included, the first five spectral features extracted were number of peaks, number of troughs, mean reflectance, mean peak width, and broadest peak width. To help further emphasize agnostic biosignatures, Earth-specific features such as chlorophylls have been manually flagged so that feature importance with and without them can be compared. Classifiers including k-nearest neighbors (KNN), Gaussian Naïve Bayes (GNB), logistic regression (LR), random forest (RF), and support vector machine (SVM) were implemented, as was a combination voting classifier. Performance metrics included false positive rates, false negative rates, and AUC with 50-50 test/train splits (Monte Carlo simulations). Key takeaways from this stage, prior to the inclusion of Raman spectra, are (1) the overall success rate of 0.933 AUC was most heavily influenced by the elemental abundance data; and (2) VNIR reflectance had the lowest classification performance with 0.52 AUC (58% of objects correctly classified). The next steps are to complete integration of Raman spectral data and to improve the approach to pre-processing and feature extraction for both types of spectral data, such as automated baseline removal, whole spectrum matching, and dimensionality reduction.

Biosignatures↗