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DOE OSTI2018

Full Karyotype Interphase Cell Analysis

Aneuploidy seems to play not only a decisive role in embryonal development but also in tumorigenesis where chromosomal and genomic instability reflect a universal feature of malignant tumors. The cost of whole genome sequencing has fallen significantly, but it is still prohibitive for many institutions and clinical settings. No applied, cost-effective, and efficient technique has been introduced yet aiming at research to assess the ploidy status of all 24 different human chromosomes in interphases simultaneously, especially in single cells. Here, we present the selection of human probe DNA and a technique using multistep fluorescence in situ hybridization (FISH) employing four sets of six labeled FISH probes able to delineate all 24 human chromosomes in interphase cells. This full karyotype analysis approach will provide additional diagnostic potential for single cell analysis. The use of spectral imaging (SIm) has enabled the use of up to eight different fluorochrome labels simultaneously. Thus, scoring can be easily assessed by visual inspection, because SIm permits computer-assigned and distinguishable pseudo-colors to each probe during image processing. This enables full karyotype analysis by FISH of single-cell interphase nuclei.

Baumgartner, Adi↗

DOE OSTI2016

Understanding of corrosion mechanisms after irradiation: effect of ion irradiation of the oxide layers on the corrosion rate of M5 - 2016-0081

Irradiation damage in fuel cladding material is mainly caused by the neutron flux that results from fission reactions occurring in the fuel. To avoid the constraints inherent in handling radioactive material, the irradiation effects on the corrosion resistance of zirconium alloys can be studied by irradiating the materials with ions. We performed an original experiment using ion irradiation to more specifically study the influence of irradiation damage in the oxide on the corrosion rate of M5{sup R}. It has been established that irradiation with a 1.3-MeV helium ion at a fluence of 10{sup 17} cm{sup -2} results in significant modifications of oxide properties, oxygen diffusion flux, and oxidation kinetics, as evidenced by Raman spectroscopy, secondary ion mass spectrometry (SIMS) analyses, and measurements of mass gains. A newly identified Raman vibration band at 712 cm{sup -1} was linked to the presence of irradiation defects and allowed the evolution of their concentrations to be followed. The oxygen diffusion flux was significantly reduced after irradiation partly due to a surface concentration decrease of oxygen. The defects remained present in the oxide after 100 days of annealing in pressurized water reactor (PWR) conditions and were thus very stable in PWR conditions, which probably means that these defects would be stable in the reactor. According to the kinetics and in agreement with the results obtained by SIMS analyses, the oxidation rate was significantly reduced after ion irradiation, and this effect remained beyond 100 days in agreement with the high stability of irradiation defects in PWR conditions. An original model described quite well the oxidation kinetic results. (authors)

36 MATERIALS SCIENCE↗

DOE OSTI2016

Investigation of Low-Level Nitrogen in Niobium by Secondary Ion Mass Spectrometry

Understanding the improvement of the SRF cavity quality factor by low-level nitrogen addition (?N-doping?) is attracting much attention from researchers. Precise, repeatable measurement of the nitrogen profile in the parts-per-thousand to parts-per-million range is vital. Secondary Ion Mass Spectrometry (SIMS) is the approach of choice because of excellent sensitivity and depth resolution. Accurate quantitation must consider sample properties, such as surface topography and crystal structure, calibration of the instrument with reference materials, and data analysis. We report the results of a SIMS study in which polycrystal and single crystal coupons were N-doped, each accompanied by new SRF-grade niobium sheet equivalent to a single cell cavity.

Tuggle, Jay↗

DOE OSTI2026

How nitrogen and oxygen shape SRF cavity performance

Nitrogen and oxygen-based surface treatments have revolutionized the performance of superconducting radiofrequency (SRF) cavities, enabling them to reach higher gradients and lower losses. However, the exact mechanisms by which these treatments improve cavity performance remain largely unknown. This work provides new insights into the role of nitrogen and oxygen in SRF cavity performance by using time-of-flight secondary ion mass spectrometry (TOF-SIMS) to precisely quantify the concentrations and depth profiles of these impurities within niobium cutouts. We correlate these impurity profiles with detailed cavity performance measurements, including surface resistance and quality factor, and compare our findings with predictions from BCS theory. The results demonstrate that while both nitrogen and oxygen enhance performance, ten times more oxygen is required to achieve the same reduction in BCS resistance as interstitial nitrogen. We present a potential model in which the observed variation arises from nitrogen's greater effectiveness in trapping hydrogen, thus reducing the formation of niobium hydrides and enhancing superconducting gap.

Hu, Hannah [Chicago U.]↗

DOE OSTI2016

Compressibility and thermal expansion of hydrous ringwoodite with 2.5(3) wt% H[subscript 2]O

Ringwoodite ({gamma}-Mg{sub 2}SiO{sub 4}) is the stable polymorph of olivine in the transition zone between 525-660 km depth, and can incorporate weight percent amounts of H{sub 2}O as hydroxyl, with charge compensated mainly by Mg vacancies (Mg{sup 2+} = 2H{sup +}), but also possibly as (Si{sup 4+} = 4H{sup +} and Mg{sup 2+} + 2H{sup +} = Si{sup 4+}). We synthesized pure Mg ringwoodite containing 2.5(3) wt% H{sub 2}O, measured by secondary ion mass spectrometry (SIMS), and determined its compressibility at 300 K by single-crystal and powder X-ray diffraction (XRD), as well as its thermal expansion behavior between 140 and 740 K at room pressure. A third-order Birch-Murnaghan equation of state (BM3 EOS) fits values of the isothermal bulk modulus K{sub T0} = 159(7) GPa and (dK{sub T}/dP){sub P = 0} = K' = 6.7(7) for single-crystal XRD; K{sub T0} = 161(4) GPa and K' = 5.4(6) for powder XRD, with K{sub T0} = 160(2) GPa and K' = 6.2(3) for the combined data sets. At room pressure, hydrous ringwoodite breaks down by an irreversible unit-cell expansion above 586 K, which may be related to dehydration and changes in the disorder mechanisms. Single-crystal intensity data were collected at various temperatures up to 736 K, and show that the cell volume V(cell) has a mean thermal expansion coefficient {alpha}{sub V0} of 40(4) x 10{sup -6}/K (143-736 K), and 29(2) x 10{sup -6}/K (143-586 K before irreversible expansion). V(Mg) have {alpha}{sub 0} values of 41(3) x 10{sup -6}/K (143-736 K), and V(Si) has {alpha}{sub 0} values of 20(3) x 10{sup -6}/K (143-586 K) and 132(4) x 10{sup -6}K (586-736 K). Based on the experimental data and previous work from {sup 29}Si NMR, we propose that during the irreversible expansion, a small amount of H{sup +} cations in Mg sites transfer to Si sites without changing the cubic spinel structure of ringwoodite, and the substituted Si{sup 4+} cations move to the normally vacant octahedral site at (1/2, 1/2, 0). Including new SIMS data on this and several Mg-ringwoodite samples from previous studies, we summarize volume-hydration data and show that the Mg{sup 2+} = 2H{sup +} dominates up to about 2 wt% H{sub 2}O, where a discontinuity in the volume vs. H{sub 2}O content trend suggests that other hydration mechanisms become important at very high H{sub 2}O contents.

Ye, Yu↗

DOE OSTI2023

Loop current fluctuations and quantum critical transport

We study electrical transport at quantum critical points (QCPs) associated with loop current ordering in a metal, focusing specifically on models of the “Hertz-Millis” type. At the infrared (IR) fixed point and in the absence of disorder, the simplest such models have infinite DC conductivity and zero incoherent conductivity at nonzero frequencies. However, we find that a particular deformation, involving N N species of bosons and fermions with random couplings in flavor space, admits a finite incoherent, frequency-dependent conductivity at the IR fixed point, \sigma(\omega>0)\sim\omega^{-2/z} σ ( ω > 0 ) ∼ ω − 2 / z , where z z is the boson dynamical exponent. Leveraging the non-perturbative structure of quantum anomalies, we develop a powerful calculational method for transport. The resulting "anomaly-assisted large N N expansion" allows us to extract the conductivity systematically. Although our results imply that such random-flavor models are problematic as a description of the physical N = 1 N = 1 system, they serve to illustrate some general conditions for quantum critical transport as well as the anomaly-assisted calculational methods. In addition, we revisit an old result that irrelevant operators generate a frequency-dependent conductivity, \sigma(\omega>0) \sim \omega^{-2(z-2)/z} σ ( ω > 0 ) ∼ ω − 2 ( z − 2 ) / z , in problems of this kind. We show explicitly, within the scope of the original calculation, that this result does not hold for any order parameter.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

DOE OSTI2017

Bad Metals from Fluctuating Density Waves

Bad metals have a large resistivity without being strongly disordered. In many bad metals the Drude peak moves away from zero frequency as the resistivity becomes large at increasing temperatures. We catalogue the position and width of the ‘displaced Drude peak’ in the observed optical conductivity of several families of bad metals, showing that \omega_\text{peak} \sim \Delta \omega \sim k_BT/\hbar ω peak ∼ Δ ω ∼ k B T / ℏ . This is the same quantum critical timescale that underpins the T T -linear dc resistivity of many of these materials. We provide a unified theoretical description of the optical and dc transport properties of bad metals in terms of the hydrodynamics of short range quantum critical fluctuations of incommensurate density wave order. Within hydrodynamics, pinned translational order is essential to obtain the nonzero frequency peak.

Delacrétaz, Luca↗

DOE OSTI2018

Mu2e Experiment: The Target Extinction Monitor [Slides]

Beam formation directs proton pulses to Mu2e production target Extinction factor $\sim 10^{-4}$ or better. Oscillating dipoles (“AC dipoles”) in beamline deflects out-of-time beam Extinction factor $\sim 10^{-7}$ or better

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2018

Commissioning Plan for the Cameca NanoSIMS 50L

In late March of 2017 a Cameca® NanoSIMS 50L was delivered to the Nuclear Security Advanced Technologies (NSAT) group at ORNL. This instrument occupies the cutting edge of Secondary Ion Mass Spectrometry (SIMS) technology, and will ultimately solidify the NSAT group’s position at the forefront of the nuclear security research and development community. This document describes the processes whereby the ORNL NanoSIMS 50L will be commissioned, culminating in the group’s ability to demonstrate both depth of proficiency and breadth of capability to sponsors and the broader community. Before describing the specific metrics and benchmarks defining the commissioning process, this document delves into the body of literature specific to SIMS analysis in support of nuclear forensics research. This in-depth literature review sets the stage for an explanation of how the NanoSIMS 50L platform will help address existing research questions and define new ones. Lastly, the document describes the measurements and projects that will take place as part of the instrument’s commissioning phase.

98 NUCLEAR DISARMAMENT, SAFEGUARDS, AND PHYSICAL P↗

DOE OSTI2019

Overview of DOE-NE NEAMS Program

The NEAMS (Nuclear Energy Advanced Modeling and Simulation) program is a multinational lab team effort aiming to develop and deploy predictive computer methods for the analysis and design of advanced nuclear reactors. US Department of Energy has made significant investments in advanced mod-sim during last decade between CASL and NEAMS. Next year, aim is for all NE mod sim to be centralized in a single program.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

DOE OSTI2018

Nuclear Effects in Neutrino Detection

Although the interactions of neutrinos with elementary particles are described with impressive precision by the Standard Model, neutrino-nucleus reactions remain less well understood. Improvements in our knowledge of neutrino-nucleus scattering will be an important requirement for the success of future experimental efforts involving neutrinos at both low ($\sim$\SI{10}{\MeV}) and medium ($\sim$\SI{1}{\GeV}) energies. In the low energy regime, the planned DUNE experiment will attempt to observe neutrinos from a nearby core-collapse supernova using liquid argon time projection chambers (LArTPCs). Unlike other large neutrino detectors, which are primarily sensitive to electron antineutrinos, DUNE will observe mostly charged current absorptions of electron neutrinos on \isotope[40]{Ar} in response to a supernova, providing a unique window into the physics of stellar collapse. Despite the importance of low-energy neutrino-nucleus reactions to DUNE's supernova physics goals, prior to the work presented in this thesis, no thorough consideration of the many possible final states generated by neutrino-argon scattering, including those involving the emission of nucleons or heavier nuclear fragments, had yet been attempted in the literature for the energy range of interest for supernova neutrinos. To aid DUNE's supernova physics program, this thesis presents a detailed theoretical model of low-energy neutrino-argon scattering. This model has been implemented within a new event generator called MARLEY (Model of Argon Reaction Low Energy Yields) which may be used to simulate realistic $\isotope[40]{Ar}(\nu_e,e^-)\isotope[40]{K}^*$ events for LArTPC supernova neutrino sensitivity studies. At medium energies, large theoretical uncertainties in predictions of neutrino-induced neutron production present a problem for precision neutrino oscillation experiments, attempts to discover the Diffuse Supernova Neutrino Background, and searches for proton decay. To const rain the widely-varying predictions of current nuclear model! s, the Accelerator Neutrino Neutron Interaction Experiment (ANNIE) collaboration plans to make a systematic measurement of neutron production by neutrino interactions in water. Because the ANNIE experimental hall is located only \SI{100}{\meter} away from the Fermilab Booster Neutrino Beam target, background neutrons correlated in time with the beam could potentially interfere with this proposed measurement. As a first step toward ANNIE's ultimate physics goals, this thesis presents an analysis of background neutron rates as a function of position within the ANNIE detector. These rates are found to be small enough for the neutron yield measurements to proceed as planned.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2020

The Diffuse Light Envelope of Luminous Red Galaxies

We use a stacking method to study the radial light profiles of luminous red galaxies (LRGs) at redshift $\sim 0.62$ and $\sim 0.25$, out to a radial range of 200 kpc. We do not find noticeable evolution of the profiles at the two redshifts. The LRG profiles appear to be well approximated by a single Sersic profile, although some excess light can be seen outside 60 kpc. We quantify the excess light by measuring the integrated flux and find that the excess is about 10% -- a non-dominant but still nonnegligible component.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2021

Focused Ion Beam analysis of non radioactive samples [PowerPoint]

The presentation includes various images to illustrate the analysis. Helios G4 Plasma FIB: Xe ion columns mills material 30 times faster than Ga; Options include: Energy Dispersive Spectroscopy (EDS), Wavelength Dispersive spectroscopy (WDS) Electron backscattered Diffraction (EBSD), Time of Flight Sims (ToF SIMS), Inert gas/vacuum sample transfer system; Excels at micromachining and collecting 3D datasets using various detection systems.

42 ENGINEERING↗

DOE OSTI2023

First Results from BREAD: Broadband Reflector Experiment for Axion Detection

We report R&D progress, as well as first dark photon search results with BREAD - a novel dish antenna for broadband ~$\mu$eV-eV wave-dark matter detection, which allows to utilize state-of-the-art high-field solenoidal magnets. Axions are converted non-resonantly to photons on a cylindrical metallic wall parallel to an external magnetic field. These photons are then focused using a novel reflector geometry onto a state-of-the-art high-sensitive photon detector. We recently demonstrated [PRL 128 (2022) 131801] that this concept using a $\sim 10\,{\rm m}^2$ conversion area in a $\sim 10\,{\rm T}$ solenoidal magnet has the potential to discover QCD axions spanning multiple decades in mass range. In this talk we discuss progress of our first stage pilot experiments - GigaBREAD and InfraBREAD - covering different mass ranges. We show first results of a room-temperature GigaBREAD prototype and discuss upscaling to larger, cryogenic and magnetized versions.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2023

DES-Y3 galaxies & ACT DR4 CMB lensing tomography

We present a measurement of the cross-correlation between the \maglim galaxies selected from the Dark Energy Survey (DES) first three years of observations (Y3) and cosmic microwave background (CMB) lensing from the Atacama Cosmology Telescope (ACT) Data Release 4 (DR4), reconstructed over $\sim 436$ $\sqdeg$ of the sky. Our galaxy sample, which covers $\sim 4143$ $\sqdeg$, is divided into six redshift bins spanning the redshift range of $0.20<z<1.05$. We adopt a blinding procedure until passing all consistency and systematics tests. After imposing scale cuts for the cross-power spectrum measurement, we reject the null hypothesis of no correlation at 9.1$\sigma$. We constrain cosmological parameters from a joint analysis of galaxy and CMB lensing-galaxy power spectra considering a flat \LCDM model, marginalized over 23 astrophysical and systematic nuisance parameters. We find the clustering amplitude $S_8\equiv \sigma_8 (\Omega_m/0.3)^{0.5} = 0.75^{+0.04}_{-0.05}$. In addition, we co nstrain the linear growth of cosmic structure as a function of redshift. Our results are consistent with recent DES Y3 analyses and suggest a preference for a lower $S_8$ compared to results from measurements of CMB anisotropies by the \textit{Planck} satellite, although at a mild level ($< 2 \sigma$) of statistical significance.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2024

Polymer Macrocycles: A novel topology to control dynamics of rubbery materials (Final Report)

One of the current challenges in polymer physics and engineering is to understand the behavior of circular macromolecules. Though such molecules have been made by dilute solution ring closure methods in the past, such procedures have been limited to relatively small, unentangled rings as well as to small sample quantities. Initial studies were also hampered by issues surrounding purity of the rings, though this problem has been somewhat overcome by the use of liquid chromatography at critical conditions (LCCC) methods that separate rings and linear chains. Furthermore, in spite of the continued progress a full understanding of ring dynamics remains elusive. The present work has addressed multiple aspects of the behavior of ring molecules by using a novel synthetic route: reversible radical recombination redox polymerization (R3P) to produce poly(3,6-dioxa-1,8-octanedithiol) (PolyDODT) molecules. The synthesis conditions were chosen to produce linear (LDODT), cyclic (RDODT) and linear-cyclic mixtures (LRDODT) in order to investigate dilute solution and rheological responses of the materials. Importantly, the R3P synthesis makes larger quantities and higher molecular weights than do the dilute solution ring closure methods and also has the potential to be scaled to industrial quantities, thus becoming commercializable. We emphasize two important outcomes of the work. The first is that the rheological investigation shows that very large molecular weight the PolyDODT rings permitted the investigation of ring dynamics from glassy towards terminal flow for molecular sizes corresponding to approximately 300 entanglements of the linear counterpart. At the same time, these very large sized rings could be diluted in a solvent in order to reduce the molecular entanglement density to less than unity. The results demonstrate that ring viscosity follows a Rouse-like linear dependence on molecular weight or entanglement number to approximately 15 entanglements. This range of "Rouse-like" response is greater than what was achieved in all prior works where synthesis conditions have limited the molecular sizes achievable. After the entanglement number $Z_w$ increases beyond approximately 15, we find that the viscosity-molecular weight scaling undergoes a rapid change from the Rouse-like $η\sim{Z}^1_w$ to a very strong power-law scaling that is approximately $η\sim{Z}^{5.8}_w$. This aspect of the work strongly suggests that prior investigations on highly pure rings have invariably been performed on unentangled systems simply because ring molecules have very high entanglement thresholds. The results are further supported by plateau modulus measurements that show that in the "Rouse-like" viscosity regime, for the RDODT samples there is a corresponding lack of a rubbery entanglement plateau and once entanglement coupling is seen, the rubbery plateau also appears in the dynamic modulus data. Furthermore, upon appropriate scaling, we show that the unentangled polyDODT rings (i.e., the diluted high molecular weight rings) show virtually identical dynamics (upon appropriate scaling to account for the chain dilutions) to the dynamics of similarly unentangled LCCC fractionated polystyrene rings.

36 MATERIALS SCIENCE↗

DOE OSTI2025

Electromagnetic shower reconstruction in the ICARUS liquid argon time projection chamber detector

The ICARUS-T600 liquid argon time projection chamber (LArTPC) detector is taking data at shallow depth as the far detector of the Short Baseline Neutrino (SBN) program at Fermilab, to search for a possible sterile neutrino signal at $\Delta m^{2} \approx 1~\text{eV}^{2}$ with the Booster (BNB) and Main Injector (NuMI) neutrino beams at $\GeV{\sim 0.8}$ and $\GeV{\sim 2}$ average energies respectively. The LArTPC technology, developed by the ICARUS collaboration and now a standard in neutrino physics, offers impressive charged-particle imaging capabilities with $\sim1 \ \text{mm}$ spatial resolution, enabling efficient discrimination between track-like signatures (e.g., from muons, pions, and protons) and electromagnetic showers (from electrons and photons). Moreover, electron and photon signatures can be distinguished both with the calorimetric measurement of local energy depositions at the shower start and with the cm-scale conversion gap signature of photons. This contribution discusses event reconstruction at ICARUS focusing on Pandora, a multi-algorithm pattern recognition software widely used in LArTPC experiments. Over a hundred Pandora algorithms and tools are used to reconstruct cosmic rays and neutrino interactions in the ICARUS detector. Recent developments have focused on the reconstruction of electromagnetic shower signatures, crucial to ensure a robust and efficient reconstruction of charged-current $\nu_e$ interactions, which serve as a key signature of sterile neutrino oscillations at SBN. In this contribution, recent improvements to the reconstruction are discussed, focusing on the discrimination between tracks and electromagnetic showers using neutrino simulations and data.

Triozzi, Riccardo [Padua U.; INFN, Padua] (ORCID:0↗

DOE OSTI2026

R$\&$D of Power Over Fiber in harsh environments and its novel application for the DUNE Photon Detection System

The Deep Underground Neutrino Experiment (DUNE) is a next generation long-baseline neutrino experiment that will send an intense beam of neutrinos through two detector complexes: a near detector complex located at Fermilab (Chicago), and a far detector complex located $\sim$ 1.5 km underground at Sanford Underground Research Facility (SURF) in South Dakota. One of the DUNE Far Detector (FD) modules will employ the Vertical Drift (VD) Technology, which will vertically drift the ionized electrons from the cathode plane suspended at the mid-height of the active volume of the cryostat. The Photon Detection System (PDS) will be installed along the cathode and behind the field cage to increase the photon detection coverage. Due to the high voltage ($\sim$300 kV) present at the cathode, conventional copper cables cannot be used to power the photon detectors. Therefore, Power-over-Fiber (PoF) technology will be deployed to power the PDS based on optical power transmission over optical fibers. This poster presents the R$&$D campaign on different PoF components under harsh environments and its novel application in the DUNE PDS.

Martinez caicedo, David Alejandro [South Dakota Sc↗