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Variational Autoencoders for Learning Nonlinear Dynamics of Physical Systems

We develop data-driven methods for incorporating physical information for priors to learn parsimonious representations of nonlinear systems arising from parameterized PDEs and mechanics. Our approach is based on Variational Autoencoders (VAEs) for learning nonlinear state space models from observations. We develop ways to incorporate geometric and topological priors through general manifold latent space representations. We investigate the performance of our methods for learning low dimensional representations for the nonlinear Burgers equation and constrained mechanical systems.

97 MATHEMATICS AND COMPUTING↗

A Variational Nodal Approach to 2D/1D Pin Resolved Neutron Transport: I Diffusion Theory

The variational nodal method (VNM) as implemented in the VARIANT code has been widely employed to fast reactor cores, but much less so for thermal reactors. In what follows we report the initial phase of development of the PANX code (Purdue - Argonne - Northwestern - Xi'an) for three-dimensional pin resolved PWR transport calculations. In two dimensions, prototype modifications of VARIANT using finite elements to obtain heterogeneous nodes and quasi-reflected interface conditions to reduce the high angular-order interface conditions, have been successfully employed to the 2D C5G7 benchmark. In three dimensions, however, the polynomial interface conditions employed in VARIANT smear fuel and coolant at each axial interface, leading to lack of convergence as the axial mesh is refined. This problem is also encountered in the 2D/1D approximations in MOC based methods. The intent of this work is to eliminate these interface homogenization effects from VNM calculations. For clarity, in this work we examine these phenomena in diffusion theory. The next stage of development will incorporate spherical harmonic trial functions to achieve more accurate transport solutions. (authors)

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

A Variational Nodal Approach to 2D/1D Pin Resolved Neutron Transport: II Spherical Harmonics

The variational nodal method (VNM) as implemented in the VARIANT code has found wide application to fast reactor problems where fuel assembly homogenization does not result in unacceptable errors. The objective of this research is to generalize VNM for application to PWR problems, where homogenization even at the pin-cell level often results in unacceptable errors. To accomplish this, we are developing the PANX code (Purdue - Argonne - Northwestern - Xi'an) to implement a 2D/1D VNM transport method without spatial homogenization employing spherical harmonics and diffusion theory, respectively, in the radial and axial directions. In the preceding paper, we employed diffusion theory in conjunction with finite element methods to implement heterogeneous VNM nodes, in which the problem of fuel-coolant smearing at axial interfaces, found in existing 2D/1D approximations, is eliminated. In this work, we generalize the resulting VNM nodes to couple spherical harmonics in the x-y plane with axial diffusion theory. We then apply the method to the three-dimensional C5G7 benchmark problem. (authors)

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Improved Variable-Transformation Algorithm for the Hexagonal Variational Nodal Method

Hexagonal Variational Nodal Method (VNM) has been widely employed in fast reactor core calculation codes. It provides the weak form solution of the second order transport equation. It employs a direct three-dimensional expansion instead of the transverse integration technique, with the singular term caused by transverse integration over the hexagonal nodal avoided. However, as the increasing Pn expansion order in angle, the number of moments increases dramatically, which significantly increases the requirements in both memory and computational time. As a consequence, Yang proposed the Variable-Transformation Algorithm. It firstly used the reverse Cuthill-McKee (RCMK) reordering method to transform the response matrices into block-diagonal. Then, for the unreducible matrices, orthogonal transformation was applied, after which the matrices were sparse enough to be reduced by using the RCMK reordering once more. In this summary, based on a newly developed hexagonal VNM code NECP-VioletHex, the Variable Transformation Algorithm was investigated and improved by adopting more constraints to the basis functions to further take advantage of the symmetric properties of the hexagonal-z nodes. (authors)

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Variational Nodal 2D/1D Transport/Diffusion Solutions of the C5G7 Benchmark Problems

This work is the continuation of our effort to generalize the variational nodal method (VNM) for application to pin-resolved whole-core PWR problems. To this end, a 2D/1D VNM method without spatial homogenization is formulated and implemented in the PANX code. We employ diffusion theory in the axial direction combined with two-dimensional transport in the x-y plane. In our initial work, we employed the standard spherical harmonics method. To increase accuracy and reduce computational effort, we present two refinements: First, the even-parity integral method within the nodes reduces the computational effort required to form the response matrices. Second, the use of quasi-reflected interface conditions reduces the dimension of the resulting response matrices and therefore the CPU time required to solve the equations. We apply the method to the three-dimensional, un-rodded C5G7 benchmark problem. (authors)

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

Data assimilation for burnup distribution of PWR with three-dimensional variational algorithm and artificial neutral network

In this paper, a data-assimilation method has been proposed and applied for the burnup distribution of PWR. The burnup distribution is significant to the safety and economy of the reactor, as it is essential for the fuel-reloading design and optimization. Due to the burnup distribution cannot be measured directly during the reactor operation, the numerical simulation is widely applied to determine the burnup distribution. However, there is a deviation between the numerical simulation and the actual core due to some unavoidable factors, such as component manufacturing deviation, uneven flow distribution and so on. These differences would induce the errors to the simulation values of power distributions and hence to the burnup distribution. To address this problem, a data-assimilation method for the burnup distribution has been proposed with the application of power-distribution measurements. In our research, the three-dimensional variational (3DVAR) algorithm was applied for burnup-distribution calibration and the artificial neutral network (ANN) was applied to establish the relation between power distribution and corresponding burnup distribution. As engineering verification, the proposed data-assimilation method has been applied to the CNP1000 PWR operated in China. The numerical results indicated that the burnup-distribution errors can be reduced notably, as the maximum value of relative errors for power distribution can be reduced from 5.35% to 3.96%. (authors)

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

Revealing important nocturnal and day-to-day variations in fire smoke emissions through a multiplatform inversion

We couple airborne, ground-based, and satellite observations; conduct regional simulations; and develop and apply an inversion technique to constrain hourly smoke emissions from the Rim Fire, the third largest observed in California, USA. Emissions constrained with multiplatform data show notable nocturnal enhancements (sometimes over a factor of 20), correlate better with daily burned area data, and are a factor of 2–4 higher than a priori estimates, highlighting the need for improved characterization of diurnal profiles and day-to-day variability when modeling extreme fires. Constraining only with satellite data results in smaller enhancements mainly due to missing retrievals near the emissions source, suggesting that top-down emission estimates for these events could be underestimated and a multiplatform approach is required to resolve them. As a result, predictions driven by emissions constrained with multiplatform data present significant variations in downwind air quality and in aerosol feedback on meteorology, emphasizing the need for improved emissions estimates during exceptional events.

54 ENVIRONMENTAL SCIENCES↗

Van Allen Probes observations of magnetic field dipolarization and its associated O + flux variations in the inner magnetosphere at L <6.6: Dipolarization in Inner Magnetosphere

Here we investigate the magnetic field dipolarization in the inner magnetosphere and its associated ion flux variations, using the magnetic field and energetic ion flux data acquired by the Van Allen Probes. From a study of 74 events that appeared at L=4.5–6.6 between 1 October 2012 and 31 October 2013, we reveal the following characteristics of the dipolarization in the inner magnetosphere: (1) its time scale is approximately 5 min; (2) it is accompanied by strong magnetic fluctuations that have a dominant frequency close to the O + gyrofrequency; (3) ion fluxes at 20–50 keV are simultaneously enhanced with larger magnitudes for O + than for H + ; (4) after a few minutes of the dipolarization, the flux enhancement at 0.1–5keV appears with a clear energy-dispersion signature only for O + ; and (5) the energy-dispersed O + flux enhancement appears in directions parallel or antiparallel to the magnetic field. From these characteristics, we discuss possible mechanisms that can provide selective acceleration to O + ions at >20keV. We conclude that O + ions at L = 5.4–6.6 undergo nonadiabatic local acceleration caused by oscillating electric field associated with the magnetic fluctuations and/or adiabatic convective transport from the plasma sheet to the inner magnetosphere by the impulsive electric field. At L = 4.5–5.4, however, only the former acceleration is plausible. Finally, we also conclude that the field-aligned energy-dispersed O + ions at 0.1–5 keV originate from the ionosphere and are extracted nearly simultaneously to the onset of the dipolarization.

58 GEOSCIENCES↗

Seasonal variation of shallow-to-deep convection transition and its link to the environmental conditions over the Central Amazon: Shallow-to-Deep Convection Transition

This study aims to characterize the seasonal variation of the shallow-to-deep convection transition and understand how environmental conditions impact the behavior of this transition using data collected from the Observations and Modeling of the Green Ocean Amazon (GOAmazon) field campaign in the Central Amazon (Manaus). The diurnal cycle of the rain/cloud fraction shows that the wet season has more extensive shallow convection before the transition to deep convection with larger fractional coverage and rainfall; deep convection in the transition season is more intense and has higher vertical extension and a stronger updraft. Surface meteorology, atmospheric moisture, instability, and wind shear are contrasted for the shallow/congestus convection (SC) cases and the locally formed shallow-to-deep convection transition (LD) cases. The comparisons suggest that occurrence of the LD is generally promoted under the conditions of high atmospheric moisture and instability but has a weaker dependence on wind shear. The relative importance of these environmental controls also varies in different seasons: The dry and transition seasons require a deeper moist layer from the boundary layer to midtroposphere than the wet season; convective available potential energy (CAPE) is higher during the transition season, but it is a less important factor for shallow-to-deep convection transition than in other seasons; LD only has significantly larger wind shears than SC during the dry season.

54 ENVIRONMENTAL SCIENCES↗

Investigation of the Electron Density Variation During the 21 August 2017 Solar Eclipse

Abstract This paper presents a comparison of modeled and measured electron densities for the 21 August 2017 solar eclipse across the USA. The location of the instrument was (43.81°N, 247.32°E) where the maximum obscuration of 99.6% occurred at 17.53 hr UT on 21 August. The solar apparent time was 9.96 hr, and the duration of the eclipse was 2.7 hr. It was found that if it is assumed that there are no chromosphere emissions at totality, ~30% coronal emission remaining at totality gave the best fit to the electron density variation at 150 km. The 30% coronal emission estimate has uncertainties associated with respect to uncertainties in the solar spectrum, the measured electron density, and the amount of chromosphere emissions remaining at totality. The agreement between the modeled and measured electron densities is excellent at 150 km with the assumed 30% coronal emission at totality. At other altitudes, the agreement is very good, but the altitude profile would be improved if the model peak electron density ( N m F 2 ) decayed more slowly to better match the data. The minimum N m F 2 in the model occurs ~10 min after totality when it decreases to 0.55 from its noneclipse value. The minimum of the N m F 2 data occurs between 6 and 10 min after totality but is ~15% larger. The total electron content decreases to 0.65 of its preeclipse value. These relative changes agree well with those predicted by others prior to the eclipse.

Reinisch, B. W.↗

Spatial and Temporal Variations in the Moment Tensor Solutions of the 2008 Wenchuan Earthquake Aftershocks and Their Tectonic Implications

Following the mainshock of the 2008 M8 Wenchuan Earthquake, there were more than 300 M L ≥ 4.0 aftershocks that occurred between 12 May 2008 and 8 September 2010. We analyzed here the broadband waveforms for these events and found 160 events with sufficient signal-to-noise levels to invert for seismic moment tensors. Considering the length of the activated fault and the distances to the recording stations, four velocity models were employed to account for variability in crustal structure. The moment tensor solutions show considerable variations with a mixture of mainly reverse and strike-slip mechanisms and a small number of normal events and ambiguous events. We analyzed the spatial and temporal distribution of the aftershocks and their mechanism types to characterize the structure and the deformation occurring in the Longmen Shan fold and thrust belt. Our results suggest that the stress is very complex at the Longmen Shan fault zone. The moment tensors have both a spatial segmentation with two major categories of the moment tensor of thrust and strike slip; and a temporal pattern that the majority of the aftershocks gradually migrated to thrust-type events. The variability of aftershock mechanisms is a strong indication of significant tectonic release and stress reorganization that activated numerous small faults in the system.

58 GEOSCIENCES↗

Transitional Structures with Continuous Variations in Atomic Positions from Anatase to Rutile Improve Photocatalytic Activity

Abstract TiO 2 polymorphs have distinct properties that are widely employed in various applications. However, mechanisms of transformations between these polymorphs are not fully understood, especially at atomic scale, inhibiting advancing the design and application of the transitional phases. Here, based on results from semi‐in situ transmission electron microscopy, density functional theory, and X‐ray photoemission experiments, a physical picture of transitional structures is discovered, in which continuous variations in atomic positions form along a previously unreported anatase‐to‐rutile phase transformation path of [010] A –to–[] R and (004) A –to– (011) R . These gradient structures give rise to continuous band bending, which promotes electron‐hole separation and inhibits their recombination across the bulk of the particles, leading to a large functionally active volume fraction and resulting in high photoactivity. These findings suggest that interphase matter based on extended gradient structures can be designed to advance new functions not achievable using abrupt interfaces.

36 MATERIALS SCIENCE↗

Imaging Spatial Variations of Optical Bandgaps in Perovskite Solar Cells

A fast, nondestructive, camera-based method to capture optical bandgap images of perovskite solar cells (PSCs) with micrometer-scale spatial resolution is developed. This imaging technique utilizes well-defined and relatively symmetrical band-to-band luminescence spectra emitted from perovskite materials, whose spectral peak locations coincide with absorption thresholds and thus represent their optical bandgaps. The technique is employed to capture relative variations in optical bandgaps across various PSCs, and to resolve optical bandgap inhomogeneity within the same device due to material degradation and impurities. Degradation and impurities are found to both cause optical bandgap shifts inside the materials. The results are confirmed with micro-photoluminescence spectroscopy scans. The excellent agreement between the two techniques opens opportunities for this imaging concept to become a quantified, high spatial resolution, large-area characterization tool of PSCs. This development continues to strengthen the high value of luminescence imaging for the research and development of this photovoltaic technology.

14 SOLAR ENERGY↗

Ending the Chase for a Perfect Binder: Role of Surface Chemistry Variation and its Influence on Silicon Anodes

In this work we examine the influence of the type of silicon source material (two milled and two plasma enhanced chemical vapor deposition) on the electrochemical performance of silicon-based anodes for Li-ion batteries. The four representative Si sources were previously identified in literature but have never been compared side by side, which is critical to understanding the wide variation in performance reported for silicon-based electrodes. These particles display unique surface features associated with surface oxides and residual precursor species (Si-N, Si-C, Si-H) which impact processability by changing interactions within the electrode slurry and the resulting electrochemical performance. These properties should be taken into consideration when utilizing “off-the-shelf” Si powders for investigations and would be good variables to explore to understand why certain chemistries display suitable performance, while others “don't work.”

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Interannual variations in needle and sapwood traits of Pinus edulis branches under an experimental drought

Abstract In the southwestern USA , recent large‐scale die‐offs of conifers raise the question of their resilience and mortality under droughts. To date, little is known about the interannual structural response to droughts. We hypothesized that piñon pines ( Pinus edulis ) respond to drought by reducing the drop of leaf water potential in branches from year to year through needle morphological adjustments. We tested our hypothesis using a 7‐year experiment in central New Mexico with three watering treatments (irrigated, normal, and rain exclusion). We analyzed how variation in “evaporative structure” (needle length, stomatal diameter, stomatal density, stomatal conductance) responded to watering treatment and interannual climate variability. We further analyzed annual functional adjustments by comparing yearly addition of needle area ( LA ) with yearly addition of sapwood area ( SA ) and distance to tip ( d ), defining the yearly ratios SA : LA and SA : LA / d . Needle length ( l ) increased with increasing winter and monsoon water supply, and showed more interannual variability when the soil was drier. Stomatal density increased with dryness, while stomatal diameter was reduced. As a result, anatomical maximal stomatal conductance was relatively invariant across treatments. SA : LA and SA : LA / d showed significant differences across treatments and contrary to our expectation were lower with reduced water input. Within average precipitation ranges, the response of these ratios to soil moisture was similar across treatments. However, when extreme soil drought was combined with high VPD , needle length, SA : LA and SA : LA / d became highly nonlinear, emphasizing the existence of a response threshold of combined high VPD and dry soil conditions. In new branch tissues, the response of annual functional ratios to water stress was immediate (same year) and does not attempt to reduce the drop of water potential. We suggest that unfavorable evaporative structural response to drought is compensated by dynamic stomatal control to maximize photosynthesis rates.

59 BASIC BIOLOGICAL SCIENCES↗

Valence : A Massively Parallel Implementation of the Variational Subspace Valence Bond Method

This work describes the software package, Valence, for the calculation of molecular energies using the variational subspace valence bond (VSVB) method. VSVB is an ab initio electronic structure method based on nonorthogonal orbitals. Important features of practical value include high parallel scalability, wave functions that can be constructed automatically by combining orbitals from previous calculations, and ground and excited states that can be modeled with a single configuration or determinant. Here, the open-source software package includes tools to generate wave functions, a database of generic orbitals, example input files, and a library build intended for integration with other packages. We also present the interface to an external software package, enabling the computation of optimized molecular geometries and vibrational frequencies.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Diel variation in CO 2 flux is substantial in many lakes

Lakes play a significant role in the global carbon cycle, acting as sources and sinks of carbon dioxide (CO 2 ). In situ measurements of CO 2 flux (FCO 2 ) from lakes have generally been collected during daylight, despite indications of significant diel variability. This introduces bias when scaling up to whole-lake annual aquatic carbon budgets. We conducted an international sampling program to ascertain the extent of diel variation in FCO 2 across lakes. We sampled 21 lakes over 41 campaigns and measured FCO 2 at 4-h intervals over a full diel cycle. Rates of FCO 2 ranged from −3.16 to 4.39 mmol m −2 h −1 . Integrated over a day, FCO 2 ranged from −381.68 to 878.49 mg C m −2 d −1 (mean = 76.54) across campaigns. We identified three characteristic diel patterns in FCO 2 related to trophic status and show that for half of the campaigns, daily flux estimates were biased by > 50% if based on a single (daytime) measurement.

de Eyto, Elvira [Marine Institute, Mayo (Ireland)]↗

Variational projection methods for gradient crystal plasticity using Lie algebras

Summary A computational method is developed for evaluating the plastic strain gradient hardening term within a crystal plasticity formulation. While such gradient terms reproduce the size effects exhibited in experiments, incorporating derivatives of the plastic strain yields a nonlocal constitutive model. Rather than applying mixed methods, we propose an alternative method whereby the plastic deformation gradient is variationally projected from the elemental integration points onto a smoothed nodal field. Crucially, the projection utilizes the mapping between Lie groups and algebras in order to preserve essential physical properties, such as orthogonality of the plastic rotation tensor. Following the projection, the plastic strain field is directly differentiated to yield the Nye tensor. Additionally, an augmentation scheme is introduced within the global Newton iteration loop such that the computed Nye tensor field is fed back into the stress update procedure. Effectively, this method results in a fully implicit evolution of the constitutive model within a traditional displacement‐based formulation. An elemental projection method with explicit time integration of the plastic rotation tensor is compared as a reference. A series of numerical tests are performed for several element types in order to assess the robustness of the method, with emphasis placed upon polycrystalline domains and multi‐axis loading. Copyright © 2016 John Wiley & Sons, Ltd.

Truster, Timothy J.↗