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At least 919 records · Page 51

Oceanographic results from analysis of ERS-1 altimetry

Large scale dynamic ocean topography and its variations were observed using ERS-1 radar altimeter measurements. The altimeter measurements analyzed are primarily from the ESA ocean product (OPR02) and from the Interim Geophysical Data Records (IGDR) generated by NOAA from the fast delivery (FD) data during the ERS-1 35 day repeat orbit phase. The precise orbits used for the dynamic topography solution are computed using dual satellite crossover measurements from ERS-1 and TOPEX (Topology Ocean Experiment)/Poseidon (T/P) as additional tracking data, and using improved models and constants which are consistent with T/P. Analysis of the ERS-1 dynamic topography solution indicates agreement with the T/P solution at the 5 cm root mean square level, with regional differences as large as 15 cm tide gauges at the 8 to 9 cm level. There are differences between the ERS-1 OPR02 and IGDR determined dynamic topography solutions on the order of 5 cm root mean square. Mesoscale oceanic variability time series obtained using collinear analysis of the ERS-1 altimeter data show good qualitative agreement when compared with the T/P results.

Tapley, B. D.↗

XTE J1908+094

Goddard Space Flight Center reports the serendipitous discovery of a new x-ray transient, XTE J1908+094, in RXTE (Rossi X-ray Timing Explorer) PCA (Proportional Counter Array) observations of the soft-gamma-ray repeater SGR 1900+14, triggered following the burst activity on Feb. 17-18 (GCN 1253). These observations failed to detect the 5.2-s SGR pulsations, pointing towards a possible new source as the origin of the high x-ray flux. An RXTE PCA scan of the region around SGR 1900+14 on Feb. 21 was consistent with emission only from known sources (and no new sources). However, the scans required SGR 1900+14 to be 20 times brighter than its quiescent flux level (GCN 1256). A Director's Discretionary Time Chandra observation on Mar. 11 showed that the SGR was quiescent and did not reveal any new source within the Chandra ACIS (Advanced CCD (charge coupled device) Imaging Spectrometer) field-of-view. A subsequent RXTE PCA scan on Mar. 17, taken in combination with the first scan, required that a new source be included in the fit. The best-fit position is R.A. 19h 08m 50s, Decl. = +9 22 deg .5 (equinox J2000.0; estimated 2 deg systematic error radius), or approximately 24 deg away from the SGR source. The source spectrum (2-30 kev) can be best fit with a power-law function including photoelectric absorption (column density N_h = 2.3 x 10(exp 22), photon index = 1.55). Iron line emission is present, but may be due to the Galactic ridge. Between Feb. 19 and Mar. 17, the source flux (2-10 keV) has risen from 26 to 64 mCrab. The power spectrum is flat between 1 mHz and 0.1 Hz, falling approximately as 1/f**0.5 up to 1 Hz. At 1 Hz is seen a broad quasiperiodic oscillation peak and a break to a 1/f**2 power law, which continues to 4 Hz. The fractional rms (root mean square) amplitude from 1 mHz to 4 Hz is 43 percent. No coherent pulsations are seen between 0.001 and 1024 Hz. The authors conclude that XTE J1908+094 is a new blackhole candidate.

Woods, P. M.↗

Rootcap structure in wild type and in a starchless mutant of Arabidopsis

Rootcaps of the wild type (WT) and of a starchless, gravitropic mutant (TC7) of Arabidopsis thaliana L. were examined by electron microscopy to identify cellular polarities with respect to gravity. In columella cells, nuclei are located proximally, and the nuclear envelope is continuous with endoplasmic reticulum (ER) that is in turn connected to nearby plasmodesmata. Impregnation of ER with osmium ferricyanide revealed numerous contacts between columella plastids and ER in both genotypes. ER is present mostly in the outer regions of the columella protoplast except in older columella cells that are developing into peripheral cells. In vertical roots, only columella cells that are intermediate in development (story 2 cells) have a higher surface density (S) of ER in the distal compared to proximal regions of the cell. The distal but not the proximal S of the ER is constant throughout columella development. Plastids are less sedimented in TC7 columella cells compared to those of the WT. It is hypothesized that plastid contact with the ER plays a role in gravity perception in both genotypes.

NASA Discipline Plant Biology↗

Novel software for analysis of root gravitropism: comparative response patterns of Arabidopsis wild-type and axr1 seedlings

In an earlier study (Evans, Ishikawa & Estelle 1994, Planta 194, 215-222) we used a video digitizer system to compare the kinetics of auxin action on root elongation in wild-type seedlings and seedlings of auxin response mutants of Arabidopsis thaliana (L.) Heynh. We have since modified the system software to allow determination of elongation on opposite sides of vertical or gravistimulated roots and to allow continuous measurement of the angle of orientation of sequential subsections of the root during the response. We used this technology to compare the patterns of differential growth that generate curvature in roots of the Columbia ecotype and in the mutants axr1-3, axr1-12 and axr2, which show reduced gravitropic responsiveness and reduced sensitivity to inhibition by auxin. The pattern of differential growth during gravitropism differed in roots of wild-type and axr1 seedlings. In wild-type roots, initial curvature resulted from differential inhibition of elongation in the distal elongation zone (DEZ). This was followed by an acceleration of elongation along the top side of the DEZ. In roots of axr1-3, curvature resulted from differential stimulation of elongation whereas in roots of axr1-12 the response was variable. Roots of axr2 did not exhibit gravitropic curvature. The observation that the pattern of differential growth causing curvature is dramatically altered by a change in sensitivity to auxin is consistent with the classical Cholodny-Went theory of gravitropism which maintains that differential growth patterns induced by gravistimulation are mediated primarily by gravi-induced shifts in auxin distribution. The new technology introduced with this report allows automated determination of stimulus response patterns in the small but experimentally popular roots of Arabidopsis.

Non-NASA Center↗

Pattern Identification - A Foundation for Research in the Emphasis of Design Patterns in Systems Engineering and Knowledge Capture

Pattern Language describes the morphology and functionality of a system in the absence of design particulars. Harnessing this capability will provide the Systems Engineering discipline a means of managing the development of increasingly complex systems with increasingly distributed design teams while capturing and retaining knowledge for future generations. Pattern Language is a syntax for describing, and structurally relating, design patterns. Design patterns contextually describe the application of domain knowledge in the engineered solution to the force balance problem. The parallels between pattern recognition and application, as a fundamental stage of human learning, and pattern observation within a complex system, suggests pattern language may be a valuable tool in the capture and dissemination of knowledge. Pattern application has enjoyed considerable study over the last several decades, however much of this work has focused on the replication of design particulars. This work returns to the roots of Pattern Language and explores the utility of patterns as an architectural description and guide, and knowledge capture method, for complex system development beginning with the identification of a time proven design pattern.

Russell, Samuel P.↗

Rapidity gap cross sections measured with the ATLAS detector in pp collisions at root s=7 TeV

Pseudorapidity gap distributions in proton-proton collisions at {radical}s = 7 {approx} TeV are studied using a minimum bias data sample with an integrated luminosity of 7.1 {micro}b{sup -1}. Cross sections are measured differentially in terms of {Delta}{eta}{sup F}, the larger of the pseudorapidity regions extending to the limits of the ATLAS sensitivity, at {eta} = {+-}4.9, in which no final state particles are produced above a transverse momentum threshold p{sub T}{sup cut}. The measurements span the region 0 < {Delta}{eta}{sup F} < 8 for 200 {approx} MeV < p{sub T}{sup cut} < 800 {approx} MeV. At small {Delta}{eta}{sup F}, the data test the reliability of hadronization models in describing rapidity and transverse momentum fluctuations in final state particle production. The measurements at larger gap sizes are dominated by contributions from the single diffractive dissociation process (pp {yields} Xp), enhanced by double dissociation (pp {yields} XY) where the invariant mass of the lighter of the two dissociation systems satisfies M{sub Y} {approx}< 7 GeV. The resulting cross section is d{sigma}/d{Delta}{eta}{sup F} {approx}1 mb for {Delta}{eta}{sup F} {approx}>3. The large rapidity gap data are used to constrain the value of the Pomeron intercept appropriate to triple Regge models of soft diffraction. The cross section integrated over all gap sizes is compared with other LHC inelastic cross section measurements.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Modulation of statolith mass and grouping in white clover (Trifolium repens) growth in 1-g, microgravity and on the clinostat

Current models of gravity perception in higher plants focus on the buoyant weight of starch-filled amyloplasts as the initial gravity signal susceptor (statolith). However, no tests have yet determined if statolith mass is regulated to increase or decrease gravity stimulus to the plant. To this end, the root caps of white clover (Trifolium repens) grown in three gravity environments with three different levels of gravity stimulation have been examined: (i) 1-g control with normal static gravistimulation, (ii) on a slow clinostat with constant gravistimulation, and (iii) in the stimulus-free microgravity aboard the Space Shuttle. Seedlings were germinated and grown in the BioServe Fluid Processing Apparatus and root cap structure was examined at both light and electron microscopic levels, including three-dimensional cell reconstruction from serial sections. Quantitative analysis of the electron micrographs demonstrated that the starch content of amyloplasts varied with seedling age but not gravity condition. It was also discovered that, unlike in starch storage amyloplasts, all of the starch granules of statolith amyloplasts were encompassed by a fine filamentous, ribosome-excluding matrix. From light micrographic 3-D cell reconstructions, the absolute volume, number, and positional relationships between amyloplasts showed (i) that individual amyloplast volume increased in microgravity but remained constant in seedlings grown for up to three days on the clinostat, (ii) the number of amyloplasts per cell remained unchanged in microgravity but decreased on the clinostat, and (iii) the three-dimensional positions of amyloplasts were not random. Instead amyloplasts in microgravity were grouped near the cell centers while those from the clinostat appeared more dispersed. Taken together, these observations suggest that changing gravity stimulation can elicit feedback control over statolith mass by changing the size, number, and grouping of amyloplasts. These results support the starch-statolith theory of graviperception in higher plants and add to current models with a new feedback control loop as a mechanism for modulation of statolith responsiveness to inertial acceleration.

Flight Experiment↗

Full commuting projector Hamiltonians of interacting symmetry-protected topological phases of fermions

In this work, using the decorated domain wall procedure, we construct finite-depth local unitaries that realize fermionic symmetry-protected topological (SPT) phases. This results in explicit full commuting projector Hamiltonians, where "full" implies the fact that the ground state as well as all excited states of these Hamiltonians realize the nontrivial SPT phase. We begin by constructing explicit examples of 1+1D phases protected by the symmetry group G =$\mathbb{Z}_2^T$×$\mathbb{Z}_2^F$, which also has a free fermion realization in class BDI, and by the symmetry group G =$\mathbb{Z}_4$×$\mathbb{Z}_4^F$, which does not. We then turn to 2+1D, and construct the square roots of the Levin-Gu bosonic SPT phase, protected by $\mathbb{Z}_2$×$\mathbb{Z}_2^F$ symmetry, in a concrete model of fermions and spins on the triangular lattice. Edge states and the anomalous symmetry action on them are explicitly derived. Although this phase has a free fermion representation as two copies of p + ip superconductors combined with their p - ip counterparts with a different symmetry charge, the full set of commuting projectors is only realized in the strongly interacting version, which also implies that it admits a many-body localized realization.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Study of the Bose-Einstein correlations of same-sign pions in proton-lead collisions

Correlations of same-sign charged pions are analysed using proton-lead collision data collected by the LHCb experiment at a nucleon-nucleon centre-of-mass energy of 5.02 TeV, corresponding to an integrated luminosity of 1.06 nb -1 . Bose-Einstein correlations are observed in the form of an enhancement of pair production for same-sign charged pions with a small four-momentum difference. The dependence of the correlation radius and the intercept parameter on the reconstructed charged-particle multiplicity is investigated. The measured correlation radii scale linearly with the cube root of the reconstructed charged-particle multiplicity, being compatible with predictions of hydrodynamic models on the collision system evolution.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Stand development and other intrinsic factors largely control fine-root dynamics with only subtle modifications from resource availability

Forest productivity depends on resource acquisition by ephemeral roots and leaves. A combination of intrinsic and environmental factors influences ephemeral organs; however, difficulties in studying belowground organs impede mechanistic understanding of fine-root production and turnover. To quantify factors controlling fine-root dynamics, we grew a deciduous hardwood (Populus deltoides Bartr.) and an evergreen conifer (Pinus taeda L.) with distinct soil moisture and nutrient availability treatments. We monitored fine-root dynamics with minirhizotrons for 6 years during early stand development and expressed results on a root length, biomass and mortality-risk basis. Stand development and other intrinsic factors consistently influenced both species in the same direction and by similar magnitude. Live-root length increased to a peak during establishment and slowly declined after roots of neighboring trees overlapped. Root longevity was highest during establishment and decreased thereafter. Root longevity consistently increased with depth of appearance and initial root diameter. Season of appearance affected root longevity in the following order: spring > summer > fall > winter. The influence of soil resource availability on fine-root dynamics was inconsistent between species, and ranked below that of rooting depth, initial diameter, stand development and phenology. Fine-root biomass either increased or was unaffected by greater resource availability. Fine-root production and live root length decreased with irrigation for both species, and increased with fertilization only for poplar. Fine-root mortality risk both increased and decreased depending on species and amendment treatment. Differing responses to soil moisture and nutrient availability between species suggests we should carefully evaluate generalizations about the response of fine-root dynamics to resource availability. Finally, while attempting to describe and explain carbon allocation to fine-root production and turnover, modelers and physiologists should first consider consistent patterns of allocation caused by different depth, diameter, stand development, phenology and species before considering allocation due to soil resource availability.

59 BASIC BIOLOGICAL SCIENCES↗

Adaptive optical third-harmonic generation microscopy for in vivo imaging of tissues

Third-harmonic generation microscopy is a powerful label-free nonlinear imaging technique, providing essential information about structural characteristics of cells and tissues without requiring external labelling agents. In this work, we integrated a recently developed compact adaptive optics module into a third-harmonic generation microscope, to measure and correct for optical aberrations in complex tissues. Taking advantage of the high sensitivity of the third-harmonic generation process to material interfaces and thin membranes, along with the 1,300-nm excitation wavelength used here, our adaptive optical third-harmonic generation microscope enabled high-resolution in vivo imaging within highly scattering biological model systems. Examples include imaging of myelinated axons and vascular structures within the mouse spinal cord and deep cortical layers of the mouse brain, along with imaging of key anatomical features in the roots of the model plant Brachypodium distachyon. In all instances, aberration correction led to enhancements in image quality.

60 APPLIED LIFE SCIENCES↗

The fully nonlinear development of Goertler vortices in growing boundary layers

A combination of asymptotic and numerical methods is used to study the fully nonlinear development of small-wavelength Goertler vortices in a growing boundary layer. It is shown that the vortices spread out across the boundary layer, effectively driving the boundary layer, and that the mean flow adjusts so as to make the large-amplitude vortices locally neutral. In the region where the vortices exist, the mean flow is found to have a square-root profile, and the vortex velocity field can be written in closed form. The region of vortex activity is shown to ultimately include almost all of the original boundary layer and much of the free stream.

Hall, P.↗

Nitrate concentration effects on NO3-N uptake and reduction, growth, and fruit yield in strawberry

Strawberries (Fragaria xananassa Duch. 'Osogrande') were grown hydroponically with three NO3-N concentrations (3.75, 7.5, or 15.0 mM) to determine effects of varying concentration on NO3-N uptake and reduction rates, and to relate these processes to growth and fruit yield. Plants were grown for 32 weeks, and NO3-N uptake and nitrate reductase (NR) activities in roots and shoots were measured during vegetative and reproductive growth. In general, NO3-N uptake rates increased as NO3-N concentration in the hydroponics system increased. Tissue NO3- concentration also increased as external NO3-N concentration increased, reflecting the differences in uptake rates. There was no effect of external NO3-N concentration on NR activities in leaves or roots during either stage of development. Leaf NR activity averaged approximately 360 nmol NO2 formed/g fresh weight (FW)/h over both developmental stages, while NR activity in roots was much lower, averaging approximately 115 nmol NO2 formed/g FW/h. Vegetative organ FW, dry weight (DW), and total fruit yield were unaffected by NO3-N concentration. These data suggest that the inability of strawberry to increase growth and fruit yield in response to increasing NO3-N concentrations is not due to limitations in NO3-N uptake rates, but rather to limitations in NO3- reduction and/or assimilation in both roots and leaves.

NASA Center KSC↗

High-precision x-ray timing of three millisecond pulsars with NICER: Stability estimates and comparison with radio

The Neutron Star Interior Composition Explorer (NICER) is an X-ray astrophysics payload on the International Space Station. It enables unprecedented high-precision timing of millisecond pulsars (MSPs) without the pulse broadening and delays due to dispersion and scattering within the interstellar medium that plague radio timing. We present initial timing results from a year of data on the MSPs PSR B1937+21 and PSR J0218+4232, and nine months of data on PSR B1821−24. NICER time-of-arrival uncertainties for the three pulsars are consistent with theoretical lower bounds and simulations based on their pulse shape templates and average source and background photon count rates. To estimate timing stability, we use the σz measure, which is based on the average of the cubic coefficients of polynomial fits to subsets of timing residuals. So far we are achieving timing stabilities σz≈3×10−14 for PSR B1937+21 and on the order of 10−12 for PSRs B1821−24 and J0218+4232. Within the span of our NICER data we do not yet see the characteristic break point in the slope of σz; detection of such a break would indicate that further improvement in the cumulative root-mean-square timing residual is limited by timing noise. We see this break point in our comparison radio data sets for PSR B1821−24 and PSR B1937+21 on timescales of >2 yr.

Pulsars↗

Data from: "Ecophysiological variation in two provenances of Pinus flexilis seedlings across an elevation gradient from forest to alpine"

This archive contains data used to support conclusions drawn in “Ecophysiological variation in two provenances of Pinus flexilis seedlings across an elevation gradient from forest to alpine”, by Reinhardt et al., 2011. Data were collected over one summer season in plots within the Alpine Treeline Warming Experiment (ATWE), before climate manipulations began. The experiment was located on Niwot Ridge, in the Front Range of the Colorado Rocky Mountains. This data package includes five comma-separated-values (.csv) files, five Microsoft Excel (.xlsx) files, one .pdf file, and two types of geospatial files: keyhole markup language (.kml), and ESRI shapefiles (.shp). .csv files can be opened using any simple text-editing software (such as Notepad and TextEdit), R, and Microsoft Excel. .xlsx files can only be opened using Microsoft Excel. The .pdf file can be opened using Adobe Acrobat Reader or any other compatible file viewing software. The .kml file can be opened using Google Earth and Google Maps, and shapefiles can be opened using any software compatible with the file type, such as ESRI’s ArcGIS suite and QGIS.Data archived contain gas exchange and plant physiology measurements, non-structural carbohydrate data, among others. Geospatial files are also provided for additional locational context. The files and their contents in this data package are summarized under "Data Summary" in the included Data User's Guide. All files (excluding geospatial) are available in both Microsoft Excel and in .csv format, and are indicated in the Data Summary list as well.-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Climate change is predicted to cause upward shifts in forest tree distributions, which will require seedling recruitment beyond current forest boundaries. However, predicting the likelihood of successful plant establishment beyond current species’ ranges under changing climate is complicated by the interaction of genetic and environmental controls on seedling establishment. To determine how genetics and climate may interact to affect seedling establishment, we transplanted recently germinated seedlings from high- and low-elevation provenances (HI and LO, respectively) of Pinus flexilis in common gardens arrayed along an elevation and canopy gradient from subalpine forest into the alpine zone and examined differences in physiology and morphology between provenances and among sites. Plant dry mass, projected leaf area and shoot:root ratios were 12–40% greater in LO compared with HI seedlings at each elevation. There were no significant changes in these variables among sites except for decreased dry mass of LO seedlings in the alpine site. Photosynthesis, carbon balance (photosynthesis/respiration) and conductance increased >2× with elevation for both provenances, and were 35–77% greater in LO seedlings compared with HI seedlings. There were no differences in dark-adapted chlorophyll fluorescence (Fv/Fm) among sites or between provenances. Our results suggest that for P. flexilis seedlings, provenances selected for above-ground growth may outperform those selected for stress resistance in the absence of harsh climatic conditions, even well above the species’ range limits in the alpine zone. This indicates that forest genetics may be important to understanding and managing species’ range adjustments due to climate change.

54 ENVIRONMENTAL SCIENCES↗

Disruption of the endogenous indole glucosinolate pathway impacts the Arabidopsis thaliana root exudation profile and rhizobacterial community

Root exudates are composed of primary and secondary metabolites known to modulate the rhizosphere microbiota. Glucosinolates are defense compounds present in the Brassicaceae family capable of deterring pathogens, herbivores and biotic stressors in the phyllosphere. In addition, traces of glucosinolates and their hydrolyzed byproducts have been found in the soil, suggesting that these secondary metabolites could play a role in the modulation and establishment of the rhizosphere microbial community associated with this family. Here, we used Arabidopsis thaliana mutant lines, including the cyp79B2cyp79B3 double mutant line with a disruption in the indole glucosinolate pathway and atr1D, which overexpresses ATR1 and increases glucosinolate production. These lines were analyzed using liquid chromatography-tandem mass spectrometry (LC-MS/MS) and 16S rRNA amplicon sequencing to evaluate how genetic modifications to the indole glucosinolate pathway affects the root exudate profile of Arabidopsis thaliana, and, in turn, impacts the rhizosphere microbial community. Metabolic analysis of root exudates from the wild-type Columbia (Col-0), along with the mutant lines, confirmed that alterations to the indole glucosinolate biosynthetic pathway result in shifts in the root exudate profile of the plant. We observed changes in the relative abundance of exuded metabolites. Moreover, 16S rRNA amplicon sequencing results provided evidence that the rhizobacterial communities associated with the plant lines used were directly impacted in diversity and community composition. Here, this work provides further information on the involvement of secondary metabolites and their role in modulating the rhizobacterial community. Root metabolites dictate the presence of different bacterial species, including plant growth-promoting rhizobacteria (PGPR). Our results suggest that genetic alterations in the indole glucosinolate pathway cause disruptions beyond the endogenous levels of the plant, significantly changing the abundance and presence of different metabolites in the root exudates of the plants as well as the microbial rhizosphere community.

59 BASIC BIOLOGICAL SCIENCES↗

Observation of D 0 meson nuclear modifications in Au + Au collisions at s NN = 200 GeV

We report the first measurement of charmed-hadron (D 0 ) production via the hadronic decay channel (D 0 → K - + π + ) in Au + Au collisions at √ s NN = 200 GeV with the STAR experiment. The charm production cross section per nucleon-nucleon collision at midrapidity scales with the number of binary collisions, N bin , from p + p to central Au + Au collisions. The D 0 meson yields in central Au + Au collisions are strongly suppressed compared to those in p + p scaled by N bin , for transverse momenta p T > 3 GeV/c, demonstrating significant energy loss of charm quarks in the hot and dense medium. Here, an enhancement at intermediate p T is also observed. Model calculations including strong charm-medium interactions and coalescence hadronization describe our measurements.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Trait covariance: the functional warp of plant diversity?

In 300 BC Ancient Greece, Theophrastus was one of the first to organize the diversity of plant life on Earth into categories of function and use (Theophrastus, 1916). Currently, scientists are still working to simplify the vast array of plant species and forms in order to distill general features of plant function, structure, and strategy.

59 BASIC BIOLOGICAL SCIENCES↗