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All sourcesNASA NTRSDOE OSTI
NASA NTRS2000

Free-Flying Magnetometer Data System

The Free-Flying Magnetometer (FFM) is an autonomous "sensorcraft" developed at the Jet Propulsion Laboratory (JPL) for the Enstrophy sounding rocket mission. This mission was a collaborative project between the University of New Hampshire, Cornell University and JPL. The science goal of the mission was the study of current filamentation phenomena in the northern auroral region through multipoint measurements of magnetic field. The technical objective of the mission was the proof of concept of the JPL FFM design and the demonstration of an in-situ multipoint measurement technique employing many free-flying spacecraft. Four FFMs were successfully deployed from a sounding rocket launched from Poker Flats, Alaska on February 11, 1999. These hockey-puck-sized (80 mm diameter, 38 mm. height, 250 gram mass) free flyers each carry a miniature 3-axis flux-gate magnetometer that output +/- 2 V signals corresponding to a +/- 60,000 nT measurement range for each axis. The FFM uses a synchronized four-channel Sigma(Delta) Analog-to-Digital Converter (ADC) having a dynamic range of +/- 2.5V and converting at a rate of 279 samples/second/channel. Three channels are used to digitize the magnetometer signals to 17-bit (1.144 nT/bit) resolution. The fourth ADC channel is multiplexed for system monitoring of four temperature sensors and two battery voltages. The FFM also contains two sun sensors, a laser diode which emits a fan-shaped beam, a miniature S-band transmitter for direct communication to the ground station antennas, an ultra-stable Temperature Compensated Crystal Oscillator (TCXO) clock, an integrated data subsystem implemented in a Field-Programmable Gate Array (FPGA), a 4 Mbit Static Random Access Memory (SRAM) for data storage and Lithium Thionyl Chloride batteries for power. Communicating commands to the FFM prior to deployment is achieved with an infrared (IR) link. The FFM IR receiver responds to 9-bit pulse coded signals that are generated by an IR Light Emitting Diode (LED) in the payload for turning FFM power on or off and placing the FFM in a test mode or flight mode. The IR links are also used to synchronize (zero) the clocks onboard all the FFMs through a reset pulse originating from the payload GPS receiver that is issued when the FFMs are in flight mode. The FPGA based data subsystem manages continuous data collection from the four ADC channels and sun sensors, formatting and storing the data to SRAM, and controlling downlink transmission. The transmitter is powered only after a 2547 frame SRAM buffer has been filled (approx. 5 minutes of data). The data is Viterbi encoded and sent to the S-band transmitter via a First-In-First-Out (FIFO) buffer who's output is clocked at 100 bits/second. After the 26-second transmission, the transmitter is turned off to reduce noise coupling to the sensitive magnetometer. The data subsystem control consists of a master state machine that performs data flow management and is interfaced through a prioritized interrupt scheme to state machines that service the ADC, sun sensors and transmitter FIFO. Continuous data collection prevents the missing of data during transmission and provides implicit time tagging of the data acquired by the ADC because of synchronization with the TCXO clock.

Blaes, B.↗
DOE OSTI2026

Deep learning-assisted modeling for χ (2) nonlinear optics

Modeling second-order (χ(2)) nonlinear optical processes remains computationally expensive due to the need to resolve fast field oscillations and simulate wave propagation using methods such as the split-step Fourier method (SSFM). This can become a bottleneck in real-time applications, such as high-repetition-rate laser systems requiring rapid feedback and control. We present a long short-term memory-based surrogate model trained on SSFM simulations generated from a start-to-end model of the photocathode drive laser at SLAC National Accelerator Laboratory’s Linac Coherent Light Source II. The model achieves over 250× speedup while maintaining high fidelity, enabling future real-time optimization and laying the foundation for data-integrated modeling frameworks and digital twins of laser systems.

Accelerator Physics (physics.acc-ph)↗
DOE OSTI2020

Plant science decadal vision 2020–2030: Reimagining the potential of plants for a healthy and sustainable future

Abstract Plants, and the biological systems around them, are key to the future health of the planet and its inhabitants. The Plant Science Decadal Vision 2020–2030 frames our ability to perform vital and far‐reaching research in plant systems sciences, essential to how we value participants and apply emerging technologies. We outline a comprehensive vision for addressing some of our most pressing global problems through discovery, practical applications, and education. The Decadal Vision was developed by the participants at the Plant Summit 2019, a community event organized by the Plant Science Research Network. The Decadal Vision describes a holistic vision for the next decade of plant science that blends recommendations for research, people, and technology. Going beyond discoveries and applications, we, the plant science community, must implement bold, innovative changes to research cultures and training paradigms in this era of automation, virtualization, and the looming shadow of climate change. Our vision and hopes for the next decade are encapsulated in the phrase reimagining the potential of plants for a healthy and sustainable future. The Decadal Vision recognizes the vital intersection of human and scientific elements and demands an integrated implementation of strategies for research (Goals 1–4), people (Goals 5 and 6), and technology (Goals 7 and 8). This report is intended to help inspire and guide the research community, scientific societies, federal funding agencies, private philanthropies, corporations, educators, entrepreneurs, and early career researchers over the next 10 years. The research encompass experimental and computational approaches to understanding and predicting ecosystem behavior; novel production systems for food, feed, and fiber with greater crop diversity, efficiency, productivity, and resilience that improve ecosystem health; approaches to realize the potential for advances in nutrition, discovery and engineering of plant‐based medicines, and "green infrastructure." Launching the Transparent Plant will use experimental and computational approaches to break down the phytobiome into a "parts store" that supports tinkering and supports query, prediction, and rapid‐response problem solving. Equity, diversity, and inclusion are indispensable cornerstones of realizing our vision. We make recommendations around funding and systems that support customized professional development. Plant systems are frequently taken for granted therefore we make recommendations to improve plant awareness and community science programs to increase understanding of scientific research. We prioritize emerging technologies, focusing on non‐invasive imaging, sensors, and plug‐and‐play portable lab technologies, coupled with enabling computational advances. Plant systems science will benefit from data management and future advances in automation, machine learning, natural language processing, and artificial intelligence‐assisted data integration, pattern identification, and decision making. Implementation of this vision will transform plant systems science and ripple outwards through society and across the globe. Beyond deepening our biological understanding, we envision entirely new applications. We further anticipate a wave of diversification of plant systems practitioners while stimulating community engagement, underpinning increasing entrepreneurship. This surge of engagement and knowledge will help satisfy and stoke people's natural curiosity about the future, and their desire to prepare for it, as they seek fuller information about food, health, climate and ecological systems.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Male Runners With Lower Energy Availability Have Impaired Skeletal Integrity Compared to Nonathletes

Abstract Context Female athletes, particularly runners, with insufficient caloric intake for their energy expenditure [low energy availability (EA) or relative energy deficiency] are at risk for impaired skeletal integrity. Data are lacking in male runners. Objective To determine whether male runners at risk for energy deficit have impaired bone mineral density (BMD), microarchitecture, and estimated strength. Design Cross-sectional. Setting Clinical research center. Participants 39 men (20 runners, 19 controls), ages 16–30 years. Main Outcome Measures Areal BMD (dual-energy x-ray absorptiometry); tibia and radius volumetric BMD and microarchitecture (high-resolution peripheral quantitative computed tomography); failure load (microfinite element analysis); serum testosterone, estradiol, leptin; energy availability. Results Mean age (24.5 ± 3.8 y), lean mass, testosterone, and estradiol levels were similar; body mass index, percent fat mass, leptin, and lumbar spine BMD Z-score (−1.4 ± 0.8 vs −0.8 ± 0.8) lower (P < .05); and calcium intake and running mileage higher (P ≤ .01) in runners vs controls. Runners with EA <median had lower lumbar spine (−1.5 ± 0.7, P = .028), while runners with EA ≥median had higher hip (0.3 ± 0.7 vs −0.4 ± 0.5, P = .002), BMD Z-scores vs controls. After adjusting for calcium intake and running mileage, runners with EA <median had lower mean tibial total and trabecular volumetric BMD, trabecular bone volume fraction, cortical porosity, and apparent modulus vs controls (P < .05). Appendicular lean mass and serum estradiol (R ≥ 0.45, P ≤ .046), but not testosterone, were positively associated with tibial failure load among runners. Conclusions Despite weight-bearing activity, skeletal integrity is impaired in male runners with lower caloric intake relative to exercise energy expenditure, which may increase bone stress injury risk. Lower estradiol and lean mass are associated with lower tibial strength in runners.

Haines, Melanie S. (ORCID:0000000310024754)↗
DOE OSTI2017

Optimizing a Knowledge-driven Prospectivity Model for Gold Deposits Within Peräpohja Belt, Northern Finland

This paper combines knowledge- and data-driven prospectivity mapping approaches by using the receiver operating characteristics (ROC) spatial statistical technique to optimize the process of rescaling input datasets and the process of data integration when using a fuzzy logic prospectivity mapping method. The methodology is tested in an active mineral exploration terrain within the Paleoproterozoic Peräpohja Belt (PB) in the Northern Fennoscandian Shield, Finland. The PB comprises a greenschist to amphibolite facies, complexly deformed supracrustal sequence of variable quartzites, mafic volcanic rocks and volcaniclastic rocks, carbonate rocks, black shales, mica schists and graywackes. These formations were deposited on Archean basement and 2.44 Ga layered intrusions, during the multiple rifting of the Archean basement (2.44–1.92 Ga). Younger intrusive units in the PB comprise 2.20–2.13 Ga gabbroic sills or dikes and 1.98 Ga A-type granites. Metamorphism and complex deformation of the PB took place during the Svecofennian orogeny (1.9–1.8 Ga) and were followed by intrusions of post-orogenic granitoids (1.81–1.77 Ga). The recent mineral exploration activities have indicated several gold-bearing mineral occurrences within the PB. The Rompas Au-U mineralization is hosted within deformed and metamorphosed calc-silicate veins enclosed within mafic volcanic rocks and contains uranium-bearing zones without gold and very high-grade (>10,000 g/t Au) gold pockets with uraninite and uraninite-pyrobitumen nodules. In the vicinity of the Rompas, a magnesium skarn hosted disseminated-stockwork gold mineralization was also recognized at the Palokas-Rajapalot prospect. The exploration criteria translated into a fuzzy logic prospectivity model included data derived from regional till geochemistry (Fe, Cu, Co, Ni, Au, Te, K), high-resolution airborne geophysics (magnetic field total intensity, electromagnetic, gamma radiation), ground gravity and regional bedrock map (structures). The current exploration licenses and exploration drilling sites for gold were used to validate the knowledge-driven mineral prospectivity model.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2022

Towards a Benchmark Experiment with the Compact Nuclear Power Source

The Compact Nuclear Power Source (CNPS) was a high-assay low enriched uranium (HALEU) tristructural isotropic (TRISO)-fueled, graphite-moderated microreactor constructed in 1987 at Los Alamos National Laboratory. The reactor, conceived as a power source for short-range radar stations, was designed to be "walk-away safe," and was cooled by heat pipes and ambient air. Though the project was formally cancelled after the fuel and moderator material had been received, its potential to meaningfully advance the body of critical and integral data was evident, and critical experiments with a mock-up of the reactor proceeded at TA-18 until its disassembly in 1991. The reflector and some components of the core would later go on to see service as part of the New Production Reactor Modular High-Temperature Gas-Cooled Reactor (NP-MHTGR) critical experiments. In light of the progress made by groups like Westinghouse and X-Energy towards contemporary graphite-moderated microreactors, the system remains an attractive candidate for the basis of a benchmark experiment even today. Uncertainties remain, however, in some features of the system–inconsistencies in the dimensions and composition of the reactor’s components as described in literature and implemented in current computational models. The identification, quantification, and to the extent possible, the minimization of these uncertainties is a crucial task on the path towards creating a benchmark based on the CNPS system. The present work seeks to initiate this process with a survey of available documentation and improvements to the accuracy of CNPS neutronics models.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗
DOE OSTI2025

rcsb-api : Python Toolkit for Streamlining Access to RCSB Protein Data Bank APIs

The Protein Data Bank (PDB) was founded in 1971 as the first open-access digital data resource in biology to serve as the single global archive for three-dimensional (3D) macromolecular structure data. Current PDB holdings exceed 230,000 experimentally determined structures of proteins, nucleic acids, viruses, and macromolecular machines. The RCSB Protein Data Bank RCSB.org research-focused web portal facilitates search, analyses, and visualization of every PDB structure along with more than one million Computed Structure Models from AlphaFold DB and the ModelArchive. It is powered by a set of publicly available Application Programming Interfaces (APIs) that both support RCSB.org users and provide programmatic access to PDB data. Given the breadth and levels of granularity encompassed in this rich data collection, efficiently accessing the information programmatically may be challenging for new users. RCSB PDB has developed a Python software package, rcsb-api , that facilitates easy and efficient use of RCSB PDB APIs within a Python environment. This software tool is designed to streamline access to the extensive corpus of data housed within the PDB, enabling researchers to search, retrieve, and analyze 3D biostructure data seamlessly. Its use will accelerate research in structural biology, molecular biology and biochemistry, drug discovery, and bioinformatics by providing more efficient tools for data integration and analysis. The new toolkit is available on GitHub (github.com/rcsb/py-rcsb-api) and published to the public Python package repository (PyPI) to foster wider usage and support basic and applied research in fundamental biology, biomedicine, and the energy sciences.

FAIR principles↗
DOE OSTI2013

A 189 MHz, 2400 deg{sup 2} POLARIZATION SURVEY WITH THE MURCHISON WIDEFIELD ARRAY 32-ELEMENT PROTOTYPE

We present a Stokes I, Q and U survey at 189 MHz with the Murchison Widefield Array 32 element prototype covering 2400 deg{sup 2}. The survey has a 15.6 arcmin angular resolution and achieves a noise level of 15 mJy beam{sup -1}. We demonstrate a novel interferometric data analysis that involves calibration of drift scan data, integration through the co-addition of warped snapshot images, and deconvolution of the point-spread function through forward modeling. We present a point source catalog down to a flux limit of 4 Jy. We detect polarization from only one of the sources, PMN J0351-2744, at a level of 1.8% {+-} 0.4%, whereas the remaining sources have a polarization fraction below 2%. Compared to a reported average value of 7% at 1.4 GHz, the polarization fraction of compact sources significantly decreases at low frequencies. We find a wealth of diffuse polarized emission across a large area of the survey with a maximum peak of {approx}13 K, primarily with positive rotation measure values smaller than +10 rad m{sup -2}. The small values observed indicate that the emission is likely to have a local origin (closer than a few hundred parsecs). There is a large sky area at {alpha} {>=} 2{sup h}30{sup m} where the diffuse polarized emission rms is fainter than 1 K. Within this area of low Galactic polarization we characterize the foreground properties in a cold sky patch at ({alpha}, {delta}) = (4{sup h}, -27. Degree-Sign 6) in terms of three-dimensional power spectra.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2017

Web-based visual data exploration for improved radiological source detection

Radiation detection can provide a reliable means of detecting radiological material. Such capabilities can help to prevent nuclear and/or radiological attacks, but reliable detection in uncontrolled surroundings requires algorithms that account for environmental background radiation. The Berkeley Data Cloud (BDC) facilitates the development of such methods by providing a framework to capture, store, analyze, and share data sets. In the era of big data, both the size and variety of data make it difficult to explore and find data sets of interest and manage the data. Thus, in the context of big data, visualization is critical for checking data consistency and validity, identifying gaps in data coverage, searching for data relevant to an analyst's use cases, and choosing input parameters for analysis. Downloading the data and exploring it on an analyst's desktop using traditional tools are no longer feasible due to the size of the data. This study describes the design and implementation of a visualization system that addresses the problems associated with data exploration within the context of the BDC. Finally, the visualization system is based on a JavaScript front end communicating via REST with a back end web server.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗
DOE OSTI2017

Whole‐lake invasive crayfish removal and qualitative modeling reveal habitat‐specific food web topology

Abstract Patterning of the presence/absence of food web linkages (hereafter topology) is a fundamental characteristic of ecosystems that can influence species responses to perturbations. However, the insight from food web topology into dynamic effects of perturbations on species is potentially hindered because most described topologies represent data integrated across spatial and temporal scales. We conducted a 10‐year, whole‐lake experiment in which we removed invasive rusty crayfish ( Orconectes rusticus ) from a 64‐ha north‐temperate lake and monitored responses of multiple trophic levels. We compared species responses observed in two sub‐habitats to the responses predicted from all topologies of an integrated, literature‐informed base food web model of 32 potential links. Out of 4.3 billion possible topologies, only 308,833 (0.0072%) predicted responses that qualitatively matched observed species responses in cobble habitat, and only 12,673 (0.0003%) matched observed responses in sand habitat. Furthermore, when constrained to predictions that both matched observed responses and were highly reliable (i.e., predictions were robust to link strength values), only 5040 (0.0001%) and 140 (0.000003%) topologies were identified for cobble and sand habitats, respectively. A small number of linkages were nearly always present in these valid, reliable networks in sand, while a greater variety of possible network configurations were possible in cobble. Direct links involving invasive rusty crayfish were more important in cobble, while indirect effects involving Lepomis spp. were more important in sand. Importantly, the importance of individual species linkages differed dramatically among cobble and sand sub‐habitats within a single lake, even though species composition was identical. Although the true topology of food webs is difficult to determine, constraining topologies to include spatial resolution that matches observed experimental outcomes may reduce possibilities to a small number of plausible alternatives.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2019

The east–west division of changing precipitation in Nepal

Abstract Changes to precipitation patterns and extremes over the Nepalese Himalayas were examined using a high‐resolution, station‐based daily dataset, Asian Precipitation‐Highly Resolved Observational Data Integration Towards Evaluation (0.05° × 0.05° APHRODITE) from 1951 to 2007. The annual statistics of extreme precipitation across Nepal show a significant increase since the end of the 20th century. However, seasonal mean precipitation shows a remarkable decrease in western Nepal, particularly since 1980, forming an east–west division in the precipitation change. This decreasing trend of precipitation led to a reduction to the dry‐season stream flow of Karnali River, the major river in western Nepal. At the same time, the increasing extreme precipitation produced greater threat of flash flood in Nepal. This east–west division of the precipitation trend agrees with the second leading mode of the mean precipitation variability, which was traced to the interannual variability of the Indian Ocean sea surface temperature that showed a slowdown of warming. Similar to the APHRODITE trends, precipitation simulated by the fifth phase of the Coupled Model Intercomparison Project (CMIP5) models depicted the decreasing historical trend in western Nepal, but future projections reverse that trend towards an all‐Nepal increase. CMIP5 future climate projections depict continual warming in the Indian Ocean, potentially reversing the historical decreasing trends of precipitation in western Nepal.

Pokharel, Binod↗
DOE OSTI2022

Impacts of the boreal summer intraseasonal oscillation on precipitation extremes in Indonesia

The relationship between boreal summer intraseasonal oscillation (BSISO) and precipitation extremes over Indonesia is investigated using observational datasets from 30 years (1987–2016) of rain gauge measurements and the gridded Asian Precipitation–Highly Resolved Observational Data Integration Towards Evaluation of Water Resources from 1998 to 2015. The results indicate that the frequency of daily extreme precipitation events in Indonesia (defined as total precipitation above the 95th percentile) during extended boreal summer (May–August) is significantly modulated by BSISO, especially over the western and northern regions. Under the influences of BSISO1, the probability of the precipitation extremes over Sumatra and Borneo increases by 20–120% (relative to the seasonal probability) during phases 1–3 and approximately 50–80% over the eastern part of Borneo and Sulawesi during phase 4. Under BSISO2, the probability of the extremes increases up to 40% over Sumatra during phases 1 and 2 and up to 140% over Borneo and Sulawesi during phases 2 and 3. The increase in the probability of extreme summer precipitation is associated with enhanced large–scale moisture flux convergence and upward moisture transport induced by the active phases of BSISO. Finally, these results provide potential information for medium–to extended–range predictions of summer precipitation extremes in Indonesia.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2014

Statistical analysis of an inter-laboratory comparison of small-scale safety and thermal testing of RDX

In this study, the Integrated Data Collection Analysis (IDCA) program has conducted a proficiency test for small-scale safety and thermal (SSST) testing of homemade explosives (HMEs). Described here are statistical analyses of the results from this test for impact, friction, electrostatic discharge, and differential scanning calorimetry analysis of the RDX Class 5 Type II standard. The material was tested as a well-characterized standard several times during the proficiency test to assess differences among participants and the range of results that may arise for well-behaved explosive materials.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2014

ABL and BAM Friction Analysis Comparison

Here, the Integrated Data Collection Analysis (IDCA) program has conducted a proficiency study for Small-Scale Safety and Thermal (SSST) testing of homemade explosives (HMEs). Described here is a comparison of the Alleghany Ballistic Laboratory (ABL) friction data and Bundesanstalt fur Materialforschung und -prufung (BAM) friction data for 19 HEM and military standard explosives.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2018

Advancing our predictive understanding of river corridor exchange

Despite decades of research, we lack an accurate framework to predict and manage hydrologic exchange in the river corridor and the associated ecosystem services and functions at the scales of stream reaches and entire networks. While many individual studies have been conducted to investigate specific mechanisms, they have not been synthesized to account for heterogeneity in space, nonstationarity, and multiscale feedbacks that typify the river corridor. As a result, contradictory predictions of exchange flux, geometry, and timescale are prevalent in the literature. We attribute these contradictions to (a) failure to account for multiscale feedbacks and (b) uncertainty in the information content of common measurement methods. Here, we apply the concept of interacting multiscale spatial and time‐variable domains to the river corridor to demonstrate why more complete multiscale characterization is necessary to achieve predictive understanding. Next, we highlight uncertainties and inconsistencies in measurement methods which may obfuscate our understanding of river corridor exchange. Finally, we briefly outline four necessary advances to achieve predictive understanding of river corridor exchange: standardization of metadata, critical evaluation of the information content and support volumes for measurement techniques, multiscale model‐data integration, and advancing theoretical models of river corridor exchange. This article is categorized under: Science of Water > Hydrological Processes Water and Life > Nature of Freshwater Ecosystems Science of Water > Methods

Ward, Adam S.↗
DOE OSTI2025

The molten salt tritium transport experiment: A pumped fluoride salt loop for hydrogen isotope experimentation

Molten salt reactors (MSRs) and fusion reactors propose to use molten salts as coolants and breeder blanket materials, respectively. Tritium, however, poses safety concerns in both reactor types due to its ability to permeate through reactor materials and potential for environmental release. This manuscript addresses the tritium transport phenomena in molten salts and presents the design and analysis of the Molten Salt Tritium Transport Experiment (MSTTE). MSTTE is a forced-convection fluoride salt loop intended to measure hydrogen isotope permeation through structural materials in a flowing salt system. In the first phase, MSTTE will use FLiNaK salt and deuterium as surrogates for FLiBe and tritium, with future plans to utilize tritium and FLiBe. MSTTE couples a Copenhagen Atomics pumped salt loop with an external test section that introduces hydrogen isotopes into the loop and measures transport phenomena. The Hydrogen Injection System (HIS) controls hydrogen isotope introduction into the molten salt loop. Here, the permeation test section measures the permeation rate through stainless steel tubing in contact with flowing salt. Computational fluid dynamics (CFD) analysis ensures fully developed salt flow in the permeation test section. MSTTE is modeled with MELCOR-TMAP to predict the permeation rate as a function of experimental variables such as source term, salt flow rate, and salt temperature. Results indicate that the source term is the only parameter with a significant effect on the permeation rate. Pressure drop analysis suggests that the loop should operate below 200 LPM to maintain a pressure drop below 200 kPa. Additionally, finite-element analysis assesses thermal stress during loop operation to ensure the experiment's safe design. MSTTE will provide semi-integral data on tritium transport phenomena in molten salts and serve as a testbed for advancing molten salt technology.

11 - NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗
DOE OSTI2018

DDX1 regulates alternative splicing and insulin secretion in pancreatic β cells

DEAD-box helicase 1 (DDX1) is a multifunction protein involved in diverse cellular processes including transcription, viral replication, mRNA/miRNA processing, and tRNA splicing. Here, we report a novel function of DDX1 in mRNA alternative splicing in pancreatic β cells. By performing integrated data analysis of high-throughput RNA sequencing (RNA-Seq), and cross-linking and immunoprecipitation coupled with deep sequencing (CLIP-Seq), we identify hundreds of alternative splicing genes that are targeted by DDX1. These DDX1-targeted alternative splicing genes are mainly associated with calcium ion binding, high voltage-gated calcium channel, and transmembrane transporter. Functionally, silencing DDX1 impairs calcium influx and insulin secretion in the pancreatic β cells. These results reveal an important role for DDX1 in the regulation of gene alternative splicing and insulin secretion in pancreatic β cells.

60 APPLIED LIFE SCIENCES↗