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At least 919 records · Page 51

The hydration structure at yttria-stabilized cubic zirconia (110)-water interface with sub-Ångström resolution

The interfacial hydration structure of yttria-stabilized cubic zirconia (110) surface in contact with water was determined with ~0.5 Å resolution by high-resolution X-ray reflectivity measurement. The terminal layer shows a reduced electron density compared to the following substrate lattice layers, which indicates there are additional defects generated by metal depletion as well as intrinsic oxygen vacancies, both of which are apparently filled by water species. Above this top surface layer, two additional adsorbed layers are observed forming a characteristic interfacial hydration structure. The first adsorbed layer shows abnormally high density as pure water and likely includes metal species, whereas the second layer consists of pure water. The observed interfacial hydration structure seems responsible for local equilibration of the defective surface in water and eventually regulating the long-term degradation processes. As a result, the multitude of water interactions with the zirconia surface results in the complex but highly ordered interfacial structure constituting the reaction front.

36 MATERIALS SCIENCE↗

Measurement of laser absorption in underdense plasmas using near-field imaging of the incident and transmitted beams

Measurements of laser absorption in high-temperature, underdense plasmas produced at the Omega Laser Facility are made using two near-field imaging detectors that diagnose the spatial profile and energy of the port P9 beam before and after it transmits through the plasma. The incident beam is sampled using a partial reflection from a full-aperture, (30 cm-diam) uncoated wedge pickoff located before the target chamber vacuum window and final focus lens assembly. A concave mirror reduces the reflected beam size, allowing it to be recorded directly using a charged-coupled device (CCD) camera. The P9 transmitted beam diagnostic (P9TBD) characterizes the transmitted light by terminating the expanded beam on a semi-transparent diffuser and imaging the illuminated surface using a lens and CCD camera. The P9TBD samples a numerical aperture twice as large as the input beam, allowing the energy of transmitted beams with moderate levels of beam spray to be measured accurately. Calibration shots with no plasma provide a path to infer absorption without absolute photometric calibration of either detector. Lastly, the cross-calibration between the two detectors was measured to remain stable at ±200 ppm, enabling measurements of total beam absorption below 1% with ±0.07% error.

47 OTHER INSTRUMENTATION↗

A minimal complex of KHNYN and zinc-finger antiviral protein binds and degrades single-stranded RNA

Detecting viral infection is a key role of the innate immune system. The genomes of some RNA viruses have a high CpG dinucleotide content relative to most vertebrate cell RNAs, making CpGs a molecular marker of infection. The human zinc-finger antiviral protein (ZAP) recognizes CpG, mediates clearance of the foreign CpG-rich RNA, and causes attenuation of CpG-rich RNA viruses. While ZAP binds RNA, it lacks enzymatic activity that might be responsible for RNA degradation and thus requires interacting cofactors for its function. One of these cofactors, KHNYN, has a predicted nuclease domain. Using biochemical approaches, we found that the KHNYN NYN domain is a single-stranded RNA ribonuclease that does not have sequence specificity and digests RNA with or without CpG dinucleotides equivalently in vitro. We show that unlike most KH domains, the KHNYN KH domain does not bind RNA. Indeed, a crystal structure of the KH region revealed a double-KH domain with a negatively charged surface that accounts for the lack of RNA binding. Rather, the KHNYN C-terminal domain (CTD) interacts with the ZAP RNA-binding domain (RBD) to provide target RNA specificity. We define a minimal complex composed of the ZAP RBD and the KHNYN NYN-CTD and use a fluorescence polarization assay to propose a model for how this complex interacts with a CpG dinucleotide-containing RNA. In the context of the cell, this module would represent the minimum ZAP and KHNYN domains required for CpG-recognition and ribonuclease activity essential for attenuation of viruses with clusters of CpG dinucleotides.

Yeoh, Zoe C. (ORCID:0000000226949068)↗

Isolation and characterization of IgG3 glycan-targeting antibodies with exceptional cross-reactivity for diverse viral families

Broadly reactive antibodies that target sequence-diverse antigens are of interest for vaccine design and monoclonal antibody therapeutic development because they can protect against multiple strains of a virus and provide a barrier to evolution of escape mutants. Using LIBRA-seq (linking B cell receptor to antigen specificity through sequencing) data for the B cell repertoire of an individual chronically infected with human immunodeficiency virus type 1 (HIV-1), we identified a lineage of IgG3 antibodies predicted to bind to HIV-1 Envelope (Env) and influenza A Hemagglutinin (HA). Two lineage members, antibodies 2526 and 546, were confirmed to bind to a large panel of diverse antigens, including several strains of HIV-1 Env, influenza HA, coronavirus (CoV) spike, hepatitis C virus (HCV) E protein, Nipah virus (NiV) F protein, and Langya virus (LayV) F protein. We found that both antibodies bind to complex glycans on the antigenic surfaces. Antibody 2526 targets the stem region of influenza HA and the N-terminal domain (NTD) region of SARS-CoV-2 spike. A crystal structure of 2526 Fab bound to mannose revealed the presence of a glycan-binding pocket on the light chain. Antibody 2526 cross-reacted with antigens from multiple pathogens and displayed no signs of autoreactivity. These features distinguish antibody 2526 from previously described glycan-reactive antibodies. Further study of this antibody class may aid in the selection and engineering of broadly reactive antibody therapeutics and can inform the development of effective vaccines with exceptional breadth of pathogen coverage.

Microbiology↗

Ebola and Marburg virus matrix layers are locally ordered assemblies of VP40 dimers

Filoviruses such as Ebola and Marburg virus bud from the host membrane as enveloped virions. This process is achieved by the matrix protein VP40. When expressed alone, VP40 induces budding of filamentous virus-like particles, suggesting that localization to the plasma membrane, oligomerization into a matrix layer, and generation of membrane curvature are intrinsic properties of VP40. There has been no direct information on the structure of VP40 matrix layers within viruses or virus-like particles. We present structures of Ebola and Marburg VP40 matrix layers in intact virus-like particles, and within intact Marburg viruses. VP40 dimers assemble extended chains via C-terminal domain interactions. These chains stack to form 2D matrix lattices below the membrane surface. These lattices form a patchwork assembly across the membrane and suggesting that assembly may begin at multiple points. Our observations define the structure and arrangement of the matrix protein layer that mediates formation of filovirus particles.

59 BASIC BIOLOGICAL SCIENCES↗

A nuclear powered air cushion freighter for the 1980's.

A design for a transoceanic, dry cargo-carrying freighter is suggested; its use and operation in port are discussed. With a gross weight of 4500 metric tons (5000 tons), more than 50 percent of which is cargo, it will cruise at 50 meters per second (100 knots) in waves 2.4 meters (8 ft) high. Its peripheral jet-flexible skirt air cushion concept and air thrustors will let the freighter go over waves 8 meters high at reduced velocity. Power comes from a 1280 megawatt, helium-cooled thermal reactor. It could dock at any major port in the world, but because it needs no surface contact, it could also travel inland to land-locked ports. A modular terminal design and methods of cargo transfer are suggested. The concept of cargo containerization influences both the freighter and terminal design.

Anderson, J. L.↗

Toughening of thermosetting polyimides

Work directed toward increasing the resistance to crack propagation of thermoset polyimides is described. Rubber modification and Teflon microfiber impregnation techniques for increasing fracture toughness are investigated. Unmodified Kerimid 601 has a fracture surface work value of 0.20 in-lbs/sq in. Dispersed particles of amine terminated butadiene acrylonitrile liquid rubber or of silicone rubber do not raise this value much. By contrast, 5 percent of well fibrillated Teflon produces an eight-fold increase in fracture toughness. Further process improvements should increase this factor to 20-30.

Gollob, D. S.↗

Axisymmetric modeling of cometary mass loading on an adaptively refined grid: MHD results

The first results of an axisymmetric magnetohydrodynamic (MHD) model of the interaction of an expanding cometary atmosphere with the solar wind are presented. The model assumes that far upstream the plasma flow lines are parallel to the magnetic field vector. The effects of mass loading and ion-neutral friction are taken into account by the governing equations, whcih are solved on an adaptively refined unstructured grid using a Monotone Upstream Centered Schemes for Conservative Laws (MUSCL)-type numerical technique. The combination of the adaptive refinement with the MUSCL-scheme allows the entire cometary atmosphere to be modeled, while still resolving both the shock and the near nucleus of the comet. The main findingsare the following: (1) A shock is formed approximately = 0.45 Mkm upstream of the comet (its location is controlled by the sonic and Alfvenic Mach numbers of the ambient solar wind flow and by the cometary mass addition rate). (2) A contact surface is formed approximately = 5,600 km upstream of the nucleus separating an outward expanding cometary ionosphere from the nearly stagnating solar wind flow. The location of the contact surface is controlled by the upstream flow conditions, the mass loading rate and the ion-neutral drag. The contact surface is also the boundary of the diamagnetic cavity. (3) A closed inner shock terminates the supersonic expansion of the cometary ionosphere. This inner shock is closer to the nucleus on dayside than on the nightside.

Gombosi, Tamas I.↗

Parametric Inlet Tested in Glenn's 10- by 10-Foot Supersonic Wind Tunnel

The Parametric Inlet is an innovative concept for the inlet of a gas-turbine propulsion system for supersonic aircraft. The concept approaches the performance of past inlet concepts, but with less mechanical complexity, lower weight, and greater aerodynamic stability and safety. Potential applications include supersonic cruise aircraft and missiles. The Parametric Inlet uses tailored surfaces to turn the incoming supersonic flow inward toward an axis of symmetry. The terminal shock spans the opening of the subsonic diffuser leading to the engine. The external cowl area is smaller, which reduces cowl drag. The use of only external supersonic compression avoids inlet unstart--an unsafe shock instability present in previous inlet designs that use internal supersonic compression. This eliminates the need for complex mechanical systems to control unstart, which reduces weight. The conceptual design was conceived by TechLand Research, Inc. (North Olmsted, OH), which received funding through NASA s Small-Business Innovation Research program. The Boeing Company (Seattle, WA) also participated in the conceptual design. The NASA Glenn Research Center became involved starting with the preliminary design of a model for testing in Glenn s 10- by 10-Foot Supersonic Wind Tunnel (10 10 SWT). The inlet was sized for a speed of Mach 2.35 while matching requirements of an existing cold pipe used in previous inlet tests. The parametric aspects of the model included interchangeable components for different cowl lip, throat slot, and sidewall leading-edge shapes and different vortex generator configurations. Glenn researchers used computational fluid dynamics (CFD) tools for three-dimensional, turbulent flow analysis to further refine the aerodynamic design.

Slater, John W.↗

Estimated grain saltation in a Martian atmosphere

Mariner 9 spacecraft images showing evidence of variable surface features and surface erosion resulting from atmospheric wind on Mars have caused a renewed interest in the eolian mechanics of saltating grains. To study this phenomenon, both experimental investigation in an atmospheric wind tunnel and numerical solutions of the equations of motion of a single grain under Martian surface conditions were conducted. The numerical solutions for earth were used and empirically adjusted to correlate with existing experimental data for Mars. These modified equations were then solved to estimate grain motion for Mars. These calculations show the importance of a lifting force on the grain to initiate motion in both earth and Mars calculations. Major findings include a comparison of earth and Mars grain trajectories that show Mars length scales to be longer and to fall with a higher terminal grain velocity. The grains in the Mars calculation also made a smaller collision angle with the surface on rebound.

White, B. R.↗

Cross-Cap Defects and Fault-Tolerant Logical Gates in the Surface Code and the Honeycomb Floquet Code

We consider the Z 2 toric code, surface code, and Floquet code defined on a nonorientable surface, which can be considered as families of codes extending Shor’s nine-qubit code. We investigate the fault-tolerant logical gates of the Z 2 toric code in this setup, which corresponds to e ↔ m exchanging symmetry of the underlying Z 2 gauge theory. We find that nonorientable geometry provides a new way for the emergent symmetry to act on the code space, and discover the new realization of the fault-tolerant Hadamard gate of the two-dimensional surface code with a single cross cap connecting the vertices nonlocally along a slit, dubbed a nonorientable surface code. This Hadamard gate can be realized by a constant-depth local unitary circuit modulo nonlocality caused by a cross cap. Via folding, the nonorientable surface code can be turned into a bilayer local quantum code, where the folded cross cap is equivalent to a bilayer twist terminated on a gapped boundary and the logical Hadamard only contains local gates with intralayer couplings when being away from the cross cap, as opposed to the interlayer couplings on each site needed in the case of the folded surface code. We further obtain the complete logical Clifford gate set for a stack of nonorientable surface codes and similarly for codes defined on Klein-bottle geometries. We then construct the honeycomb Floquet code in the presence of a single cross cap, and find that the period of the sequential Pauli measurements acts as a H Z logical gate on the single logical qubit, where the cross cap enriches the dynamics compared with the orientable case. We find that the dynamics of the honeycomb Floquet code is precisely described by a condensation operator of the Z 2 gauge theory, and illustrate the exotic dynamics of our code in terms of a condensation operator supported at a nonorientable surface. Published by the American Physical Society 2024

Physics↗

Terminal area considerations for an advanced CTOL transport aircraft

Projected future conditions at large urban airports were used to identify design objectives for a long-haul, advanced transport airplane introduced for operation in the mid-1980s. Operating constraints associated with airport congestion and aircraft noise and emissions were of central interest. In addition, some of the interaction of these constraints with aircraft fuel usage were identified. The study allowed for advanced aircraft design features consistent with the future operating period. A baseline 200 passenger airplane design was modified to comply with design requirements imposed by terminal area constraints. Specific design changes included: (1) modification of engine arrangement; wing planform; (2) drag and spoiler surfaces; (3) secondary power systems; (4) brake and landing gear characteristics; and (5) the aircraft avionics. These changes, based on exploratory design estimates and allowing for technology advance, were judged to enable the airplane to: reduce wake turbulence; handle steeper descent paths with fewer limitation due to engine characteristics; reduce runway occupancy times; improve community noise contours; and reduce the total engine emittants deposited in the terminal area. The penalties to airplane performance and operating cost associated with improving the terminal area characteristics of the airplane were assessed. Finally, key research problems requiring solution in order to validate the assumed advanced airplane technology were identified.

Sussman, M. B.↗

Functional characterization of archaeal homologs of human nuclear RNase P proteins Rpp21 and Rpp29 provides insights into the molecular basis of their cooperativity in catalysis

Ribonuclease P (RNase P) is a ribonucleoprotein that catalyzes the processing of 5′ leader sequences of precursor tRNAs (pre-tRNA). RNase P proteins PhoRpp21 and PhoRpp29 in the hyperthermophilic archaeon Pyrococcus horikoshii, homologs of human nuclear RNase P proteins Rpp21 and Rpp29 respectively, fold into a heterodimeric structure and synergistically function in the activation of the specificity domain (S-domain) in RNase P RNA (PhopRNA). To elucidate the molecular basis for their cooperativity, we first analyzed binding ability to PhopRNA using a pull-down assay. The result showed that PhoRpp21 is able to bind to PhopRNA in the absence of PhoRpp29, whereas PhoRpp29 alone has reduced affinity to PhopRNA, suggesting that PhoRpp21 primarily functions as a binding element for PhopRNA in the PhoRpp21-PhoRpp29 complex. Mutational analyses suggested that although individual positively charged clusters contribute little to the PhopRNA binding, Lys53, Lys54, and Lys56 at the N-terminal helix (α2) in PhoRpp21 and 10 C-terminal residues in PhoRpp29 are essential for PhopRNA activation. Moreover, deletion of a single stranded loop linking P11 and P12 helices in the PhopRNA S-domain impaired the PhoRpp21-PhoRpp29 complex binding to PhopRNA. Collectively, the present results suggest that PhoRpp21 binds the loop between P11 and P12 helices through overall positively charged clusters on the surface of the complex and serves as a scaffold for PhoRpp29 to optimize structural conformation of its N-terminal helix (α2) in PhoRpp21, as well as C-terminal residues in PhoRpp29, for RNase P activity. - Graphical abstract: A mechanistic model for the synergistic activation of PhopRNA by PhoRpp21 and PhoRpp29. PhoRpp21 binds to the loop between P11 and P12 helices in PhopRNA and serves as a scaffold for PhoRpp29 to optimize a structural conformation of a positively charged edge composed of lysine residues (●) at α2 in PhoRpp21and C-terminal residues (â–‹) in PhoRpp29 on the protein complex which probably stabilize stacking interactions between PhopRNA and pre-tRNA. ▲ indicates the processing site in pre-tRNA. Display Omitted - Highlights: • RNase P proteins PhoRpp21 and PhoRpp29 synergistically function in RNase P catalysis. • PhoRpp21 functions as an RNA-binding element in the PhoRpp21-PhoRpp29 complex. • PhoRpp21 serves as a scaffold for PhoRpp29 in RNase P. • PhoRpp21 binds the loop between P11 and P12 helices in the PhopRNA S-domain. • The molecular basis for the cooperativity of PhoRpp21 and PhoRpp29 is presented.

60 APPLIED LIFE SCIENCES↗

Structure and dynamics of the ionosphere

The structure of the Venus ionosphere and the major processes occurring within it are summarized. The daytime ionosphere is created by solar EUV radiation incident on the thermosphere; it is in photochemical equilibrium near its peak at about 142 km, where O2(+) is the major ion, and near diffusive equilibrium in its upper regions, where the major ion is O(+). The day-to-night plasma pressure gradient across the terminator drives a nightward ion flow which, together with electron precipitation, contributes to the formation of the nighttime ionosphere. Large-scale radial holes or plasma depletions extending downwards to nearly the ionization peak in the antisolar region are also observed which are associated with regions of strong radial magnetic fields. The ionopause is a highly dynamic and complex surface, extending from an average altitude of 290 km at the subsolar point to about 1000 km at the terminator and from 200 to over 3000 km on the nightside. A variety of solar wind interaction products are observed in the mantle, a transition region between the ionospheric plasma and the flowing shocked solar wind.

Nagy, A. F.↗

Iterative solutions for one-dimensional diffusion with time varying surface composition and composition-dependent diffusion coefficient

Solutions are given for one-dimensional diffusion problems with a time varying surface composition and also a composition dependent diffusion coefficient. The most general solution does not require special mathematical functions to fit the variation in surface composition or D(C). In another solution, a series expansion may be used to fit the time dependent surface concentration. These solutions make use of iterative calculations that converge rapidly and are highly stable. Computer times are much shorter than that required for finite difference calculations and can efficiently make use of interactive graphics terminals. Existing gas carburization data were used to provide an illustration of an iterative approach with a time varying carbon composition at the free surface.

Chow, M.↗

Surface-Functionalized, Two-Dimensional Polymer Electrochromic Layers as Ultrafast, Multi-State Infrared Optical Gates

Electrochromic devices have widespread application potential, but the currently available switching speeds limit broad real-world implementation of this technology. Here, we report surface-engineered two-dimensional polymers with ionophilic pores that offer unprecedented switching speeds in solid-state, two-terminal, electrochromic devices. In particular, we demonstrate that a crystalline donor–acceptor 2DP functionalized with ethylene glycol oligomers exhibits multistate infrared absorption that is 4× faster (t c = 320 ms) with 3× coloration efficiency (491 cm 2 C –1 ) compared to an alkyl functionalized 2DP constructed from the same chromophores. The functionalized nanoporous surfaces enable rapid switching in these materials under either oxidative or reductive conditions, allowing us to access a range of robust, stable optical responses in a single electrochromic layer. These attributes led us to leverage surface-functionalized 2DPs as multistate infrared logic gates. Collectively, this work demonstrates that surface engineering of nanoporous crystalline lattices is a promising approach to co-optimize the electronic and ionic conductivities required to achieve rapidly switchable electrochromic layers. Beyond speed and efficiency, the demonstration of multistate infrared characteristics shows that electrochromic frameworks are useful in integrated optoelectronic circuits. This positions surface-engineered 2DPs as improved electrochromic coatings and a new material platform for photonic information processing and adaptive devices.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Active Role of Phosphorus in the Hydrogen Evolving Activity of Nickel Phosphide (0001) Surfaces

Optimizing catalysts for the hydrogen evolution reaction (HER) is a critical step toward the efficient production of H 2 (g) fuel from water. It has been demonstrated experimentally that transition-metal phosphides, specifically nickel phosphides Ni 2 P and Ni 5 P 4 , efficiently catalyze the HER at a small fraction of the cost of archetypal Pt-based electrocatalysts. However, the HER mechanism on nickel phosphides remains unclear. We explore, through density functional theory with thermodynamics, the aqueous reconstructions of Ni 2 P(0001) and Ni 5 P 4 (0001)/(000$ \overline{1}\ $), and we find that the surface P content on Ni 2 P(0001) depends on the applied potential, which has not been considered previously. At -0.21 V ≥ U ≥ -0.36 V versus the standard hydrogen electrode and pH = 0, a PH x -enriched Ni 3 P 2 termination of Ni 2 P(0001) is found to be most stable, consistent with its P-rich ultrahigh-vacuum reconstructions. Above and below this potential range, the stoichiometric Ni 3 P 2 surface is instead passivated by H at the Ni 3 -hollow sites. On the other hand, Ni 5 P 4 (000$ \overline{1}\ $) does not favor additional P. Instead, the Ni 4 P 3 bulk termination of Ni 5 P 4 (000$ \overline{1}\ $) is passivated by H at both the Ni 3 and P3-hollow sites. We also found that the most HER-active surfaces are Ni 3 P 2 +P+(7/3)H of Ni 2 P(0001) and Ni 4 P 3 +4H of Ni 5 P 4 (000$ \overline{1}\ $) due to weak H adsorption at P catalytic sites, in contrast with other computational investigations that propose Ni as or part of the active site. By looking at viable catalytic cycles for HER on the stable reconstructed surfaces, and calculating the reaction free energies of the associated elementary steps, we calculate that the overpotential on the Ni 4 P 3 +4H surface of Ni 5 P 4 (000$ \overline{1}\ $) (-0.16 V) is lower than that of the Ni 3 P 2 +P+(7/3)H surface of Ni 2 P(0001) (-0.21 V). This is due to the abundance of P 3 -hollow sites on Ni 5 P 4 and the limited surface stability of the P-enriched Ni 2 P(0001) surface phase. The trend in the calculated catalytic overpotentials, and the potential-dependent bulk and surface stabilities explain why the nickel phosphides studied here perform almost as well as Pt, and why Ni 5 P 4 is more active than Ni 2 P toward HER, as is found in the experimental literature. This study emphasizes the importance of considering aqueous surface stability in predicting the HER-active sites, mechanism, and overpotential, and highlights the primary role of P in HER catalysis on transition-metal phosphides.

08 HYDROGEN↗