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At least 955 records · Page 53

A comparative study of prebiotic and present day translational models

It is generally recognized that the understanding of the molecular basis of primitive translation is a fundamental step in developing a theory of the origin of life. However, even in modern molecular biology, the mechanism for the decoding of messenger RNA triplet codons into an amino acid sequence of a protein on the ribosome is understood incompletely. Most of the proposed models for prebiotic translation lack, not only experimental support, but also a careful theoretical scrutiny of their compatibility with well understood stereochemical and energetic principles of nucleic acid structure, molecular recognition principles, and the chemistry of peptide bond formation. Present studies are concerned with comparative structural modelling and mechanistic simulation of the decoding apparatus ranging from those proposed for prebiotic conditions to the ones involved in modern biology. Any primitive decoding machinery based on nucleic acids and proteins, and most likely the modern day system, has to satisfy certain geometrical constraints. The charged amino acyl and the peptidyl termini of successive adaptors have to be adjacent in space in order to satisfy the stereochemical requirements for amide bond formation. Simultaneously, the same adaptors have to recognize successive codons on the messenger. This translational complex has to be realized by components that obey nucleic acid conformational principles, stabilities, and specificities. This generalized condition greatly restricts the number of acceptable adaptor structures.

Rein, R.↗

Aeronautics for the 21st century

An assessment is made of the development possibilities of aerospace vehicle materials and structures, propulsion, avionics, configurations, computerized simulation, and operational capabilities. The supersonic transports envisioned for the 21st century would incorporate advanced, high temperature material structural design techniques, and a variable-cycle engine technology capable of a 40 percent increase in cruise efficiency over current systems, combined with low takeoff noise and efficient subsonic operation. This technology, as well as that of tilt-rotor VTOL aircraft which will be able to cruise at speeds comparable to those of present fixed-wing aircraft, are directly applicable to military systems. The impact of microelectronics and computer technologies on both avionics and the computational simulation of three-dimensional aerodynamic characteristics are also noted as important prospective developments.

Beggs, J. M.↗

Jovian Plasmas Torus Interaction with Europa. Plasma Wake Structure and Effect of Inductive Magnetic Field: 3D Hybrid Kinetic Simulation

The hybrid kinetic model supports comprehensive simulation of the interaction between different spatial and energetic elements of the Europa moon-magnetosphere system with respect to a variable upstream magnetic field and flux or density distributions of plasma and energetic ions, electrons, and neutral atoms. This capability is critical for improving the interpretation of the existing Europa flyby measurements from the Galileo Orbiter mission, and for planning flyby and orbital measurements (including the surface and atmospheric compositions) for future missions. The simulations are based on recent models of the atmosphere of Europa (Cassidy et al., 2007; Shematovich et al., 2005). In contrast to previous approaches with MHD simulations, the hybrid model allows us to fully take into account the finite gyroradius effect and electron pressure, and to correctly estimate the ion velocity distribution and the fluxes along the magnetic field (assuming an initial Maxwellian velocity distribution for upstream background ions). Photoionization, electron-impact ionization, charge exchange and collisions between the ions and neutrals are also included in our model. We consider the models with Oþ þ and Sþ þ background plasma, and various betas for background ions and electrons, and pickup electrons. The majority of O2 atmosphere is thermal with an extended non-thermal population (Cassidy et al., 2007). In this paper, we discuss two tasks: (1) the plasma wake structure dependence on the parameters of the upstream plasma and Europa's atmosphere (model I, cases (a) and (b) with a homogeneous Jovian magnetosphere field, an inductive magnetic dipole and high oceanic shell conductivity); and (2) estimation of the possible effect of an induced magnetic field arising from oceanic shell conductivity. This effect was estimated based on the difference between the observed and modeled magnetic fields (model II, case (c) with an inhomogeneous Jovian magnetosphere field, an inductive magnetic dipole and low oceanic shell conductivity).

Jovian magnetosphere↗

Sonic and Supersonic Jet Plumes

Study of sonic and supersonic jet plumes are relevant to understanding such phenomenon as jet-noise, plume signatures, and rocket base-heating and radiation. Jet plumes are simple to simulate and yet, have complex flow structures such as Mach disks, triple points, shear-layers, barrel shocks, shock- shear- layer interaction, etc. Experimental and computational simulation of sonic and supersonic jet plumes have been performed for under- and over-expanded, axisymmetric plume conditions. The computational simulation compare very well with the experimental observations of schlieren pictures. Experimental data such as temperature measurements with hot-wire probes are yet to be measured and will be compared with computed values. Extensive analysis of the computational simulations presents a clear picture of how the complex flow structure develops and the conditions under which self-similar flow structures evolve. From the computations, the plume structure can be further classified into many sub-groups. In the proposed paper, detail results from the experimental and computational simulations for single, axisymmetric, under- and over-expanded, sonic and supersonic plumes will be compared and the fluid dynamic aspects of flow structures will be discussed.

Venkatapathy, E.↗

Simulation of the Charged Particle Deflection From the Sweeping Magnet Array in the Lunar Environment Heliospheric X-Ray Imager

The Lunar Environment heliospheric X-ray Imager (LEXI) is an instrument built to image x-rays from solar wind charge exchange in Earth’s magneto sheath. Monitoring the position of the magnetopause at the inner boundary of the magneto sheath allows us to understand how magnetic reconnection regulates how energy from the solar wind is deposited into Earth’s magnetosphere. LEXI is part of an upcoming lunar lander mission set to land in Mare Crisium. To repel unwanted charged particles, the instrument carries a permanent magnet array composed of 48 neodymium magnets. The array was designed to maximize charged particle deflection while minimizing stray magnetic fields, which could impact other instruments or spacecraft operation. A Runge–Kutta-based fully kinetic particle tracing model was created to evaluate the effectiveness of LEXI’s unique charged particle deflector array. Combined with the other particle suppression measures of the instrument, including physical structures and filters, the simulations show proton and electron transmission to the LEXI detector is expected to be sufficiently reduced to allow successful imaging. The flexible simulation model can be generalized to be used in examining the magnetic deflector array effectiveness of other instruments whose signals could be compromised by unwanted charged particle contamination.

Space environment effects↗

Natural sunlight-driven oxidation of Mn 2+ (aq) and heterogeneous formation of Mn oxides on hematite

The oxidation of dissolved Mn 2+ (aq) plays a critical role in driving manganese cycles and regulating the fate of essential elements and contaminants in environmental systems. Based on sluggish oxidation rate, abiotic processes have been considered less effective oxidation pathway for manganese oxidation in environmental systems. Interestingly, a recent study (Jung et al., 2021) has shown that the rapid photochemical oxidation of Mn 2+ (aq) could be a feasible scenario to uncover the potential significance of abiotic Mn 2+ (aq) oxidation. Nevertheless, the significance of photochemical oxidation of Mn 2+ (aq) under natural sunlight exposure remains unclear. Here, we demonstrate the rapid photocatalytic oxidation of Mn 2+ (aq) and the heterogeneous growth of tunnel-structured Mn oxides under simulated freshwater and seawater conditions in the presence of natural sunlight and hematite. The natural sunlight-driven photocatalytic oxidation of Mn 2+ (aq) by hematite showed kinetic constants of 1.02 h -−1 and 0.342 h −1 under freshwater and seawater conditions, respectively. The natural sunlight-driven photocatalytic oxidation rates are quite comparable to the results obtained from the previous laboratory test using artificial sunlight, which has ∼4.5 times stronger light intensity. It is likely because of ∼5.5 times larger light exposure area in the natural sunlight-driven photocatalytic oxidation than that of the laboratory test using artificial sunlight. We also elucidate the roles of cation species in controlling the oxidation rate of Mn 2+ (aq) and the crystalline structure of Mn oxide products. Specifically, in the presence of large amounts of cations, the oxidation rate of Mn 2+ (aq) was slower likely because of competitive adsorption. Furthermore, our findings highlight that Mn 2+ contributes significantly to the formation of large-tunneled Mn oxides. These results illuminate the importance of abiotic photocatalytic processes in controlling the redox chemistry of Mn in real environmental aqueous systems on the oxidation of Mn 2+ (aq), and provide an environmentally sustainable approach to effectively remediate water contaminated with Mn 2+ (aq) using natural sunlight.

Junyeong Choi↗

Modeling Measurement Error in Dose-Response Models of Community Annoyance to Low-Noise Supersonic Flight

The primary research goal of the forthcoming NASA Quesst mission community test campaign is to collect representative community response data in support of the development of supersonic overflight noise certification standards. Beginning in 2026, NASA will fly the novel X-59 demonstrator aircraft over select communities in United States in order to demonstrate the possibility of low-noise supersonic flight over land and to collect objective measurements and subjective data on the perceptual experience of this new noise source. It is believed that a regression of a binary perceptual response (‘highly annoyed’ or ‘not’) on estimated noise levels (doses, measured in decibels) will provide a useful dose-response relationship for regulators. However, as these estimated doses will be subject to measurement error, naïve estimators of regression coefficients are inconsistent and slopes may be subject to attenuation bias. In this presentation, I contrast functional modeling of measurement error via simulation extrapolation (SIMEX) with structural Bayesian measurement error models. These methods are applied to available data collected during two NASA risk reduction studies in California in 2011 and Texas in 2018. I’ll conclude noting that in the presence of nonnegligible measurement errors, probabilities of annoyance may be overpredicted for low noise levels and underpredicted for high noise levels, therefore, methods of correcting for measurement error will be necessary to improve the utility of the dose-response relationship for policy-making purposes.

simulation↗

Modeling Dynamic Crush Behavior of Carbon Fiber Reinforced Polymer Composite Structures Using MAT213

Modeling crushing of carbon fiber reinforced polymer (CFRP) composites is challenging, and current simulation methodologies involve tuning of non-physical parameters. MAT213, a next-generation material model, has advanced functionality to better simulate dynamic impact loading. The objective of the present investigation is to evaluate the potential for using MAT213 to simulate dynamic crushing of CFRPs. Two sets of simulations were performed: one for calibration based on a set of coupon-level experiments and another for prediction of the response of structural elements. Simulations involving dynamic crushing of flat specimens were iteratively run to calibrate model parameters. The calibration demonstrated that MAT213 could produce a simulated force-displacement response within experimental scatter. The simulated failure morphology was also comparable to the experiments. After successful calibration, predictive simulations of dynamic crushing of C-channel shaped specimens were completed using a simulated crash sled test rig and two pairs of impactor mass/velocity conditions. The simulated force-displacement curve in the crash sled simulations for the lower-velocity condition fell within the experimental scatter, but the stable crush force was underpredicted by 27% in the higher-velocity simulations. Better correlation in the lower-velocity test condition likely results from the calibration condition being a similar velocity to the lower-velocity crash sled condition.

Dynamic Crush↗

Integrated Simulation Design Challenges to Support TPS Repair Operations

During the Orbiter Repair Maneuver (ORM) operations planned for Return to Flight (RTF), the Shuttle Remote Manipulator System (SRMS) must grapple the International Space Station (ISS), undock the Orbiter, maneuver it through a long duration trajectory, and orient it to an EVA crewman poised at the end of the Space Station Remote Manipulator System (SSRMS) to facilitate the repair of the Thermal Protection System (TPS). Once repair has been completed and confirmed, then the SRMS proceeds back through the trajectory to dock the Orbiter to the Orbiter Docking System. In order to support analysis of the complex dynamic interactions of the integrated system formed by the Orbiter, ISS, SRMS, and SSMS during the ORM, simulation tools used for previous ‘nominal’ mission support required substantial enhancements. These upgrades were necessary to provide analysts with the capabilities needed to study integrated system performance. Prevalent throughout this ORM operation is a dynamically varying topology. In other words, the ORM starts with the SRMS grappled to the mated Shuttle/ISS stack (closed loop topology), moves to an open loop chain topology consisting of the Shuttle, SRMS, and ISS, and then, at the repair configuration, extends the chain topology to one consisting of the Shuttle, SMS, ISS, and SSRMS/EVA crewman. The resulting long dynamic chain of vehicles and manipulators may exhibit significant motion between the Shuttle worksite and the EVA crewman due to the system flexibility throughout the topology (particularly within the SRMS/SSRMS joints and links). Since the attachment points of both manipulators span the flexible structure of the ISS, simulation analysis may also need to take that into consideration. Moreover, due to the lengthy time duration associated with the maneuver and repair, orbital effects become a factor and require the ISS vehicle control system to maintain active attitude control. Several facets of the ORM operation make the associated analytical efforts different from previous mission support, including: (1) the magnitude of the SRMS handled payload (Le., Orbiter class), (2) the orbital effects induced on the integrated system consisting of the large Shuttle and ISS masses connected by a light flexible SRMS, (3) long duration environmental consequences due to the lengthy operational times associated with the maneuver and repair of the TPS, (4) active attitude control (as opposed to free drift) interacting with the SRMS and SSRMS manipulators (also due to the length of the maneuver and repair), (5) relative dynamics between the EVA crewman and thc worksite influenced by the extended flexible topology. In order to meet these analysis challenges, an ORM simulation architecture was developed leveraging upon numerous pre-existing simulation elements to analyze the various subsystems individually. For example, core manipulator subsystem simulations for both the SRMS and SSRMS were originally combined to provide the dual-arm dynamics topology simulation (in the absence of orbital dynamics and vehicle control). This capability was later merged with the simulation used to analyze SRMS loading with a heavy payload in the orbital environment with an active payload control system (in this case, the ISS Attitude Control System (ACS)), configured for the ORM. The resulting worksite dynamics simulation, based off of the modified ORM simulation, provided the extended topological chain of vehicles and manipulators, while taking into account the orbital effects of both the Shuttle and ISS (as well as its ACS). Verification and validation (V&V) of these integrated simulations became a challenge in itself. A systematic approach needed to be developed such that integration simulation results could be tested against previous constituent simulations upon which these simulations were built. General V&V categories included: (1) core orbital state propagation, (2), stand-alone SRMS, (3) stand-alone SSRMS, (4) stand-alone ISS ACS, (5) integrated Shuttle, SRMS, ISS (with active ACS) in the orbital environment, and (5) dual-arm SRMS/SSRMS dynamics topology. Integrated simulation V&V run suites were created and correlated to verification runs from subsystem simulations, in order to establish the validity of the results. This paper discusses the simulation design challenges encountered while developing simulation capabilities to mirror the ORM operations. The paper also describes the incremental build approach that was utilized, starting with the subsystem simulation elements and integration into increasing more complex simulations until the resulting ORM worksite dynamics simulation had been assembled. Furthermore, the paper presents an overall integrated simulation V&V methodology based upon a subsystem level testing, integrated comparisons, and phased checkout.

Thermal Protection System↗

Model calculations of minor ion populations in the plasmapause

Recent observations of the density of minor ions at high altitudes in the outer plasmasphere show relative enhancements of O(2+) in regions of simultaneous O(+) enhancements. These regions also exhibit high ion temperatures. Computer simulations of the temperature structure of the plasmasphere under conditions of electron heating in the equatorial region suggest that such heating produces large gradients in both the electron and ion temperature in the ionosphere. These gradients result in an increase in the pressure of the electrons, which increases the polarization field, and of the ions, which results in large plasma scale heights at low altitudes and increased ion densities at high altitudes. The subsequent enhanced flux of O(2+) from the ionosphere produced by collisional drag of O(2+) by O(+) and the increased polarization field results in a significant increase in the O(2+) density above the ionosphere. At higher altitudes the O(2+)-O(+) collisions inhibit the upward flow of O(2+) resulting in a high-altitude peak in the O(2+) density. Above this peak, where collisions with O(+) begin to become insignificant, the O(2+) pressure gradient pushes the O(2+) into the equatorial reservoir. Simulations of conditions of moderate flux tube depletion result in an increase in this effect. The N(+) is also affected by collisions with O(+), but the increase in its density at high altitudes is primarily due to the scale height effect.

Chandler, M. O.↗

Galaxies and gas in a cold dark matter universe

We use a combined gravity/hydrodynamics code to simulate the formation of structure in a random 22 Mpc cube of a cold dark matter universe. Adiabatic compression and shocks heat much of the gas to temperatures of 10 exp 6 - 10 exp 7 K, but a fraction of the gas cools radiatively to about 10 exp 4 K and condenses into discrete, highly overdense lumps. We identify these lumps with galaxies. The high-mass end of their baryonic mass function fits the form of the observed galaxy luminosity function. They retain independent identities after their dark halos merge, so gravitational clustering produces groups of galaxies embedded in relatively smooth envelopes of hot gas and dark matter. The galaxy correlation function is approximately an r exp -2.1 power law from separations of 35 kpc to 7 Mpc. Galaxy fluctuations are biased relative to dark matter fluctuations by a factor b about 1.5. We find no significant 'velocity bias' between galaxies and dark matter particles. However, virial analysis of the simulation's richest group leads to an estimated Omega of about 0.3, even though the simulation adopts Omega = 1.

Katz, Neal↗

The Kelvin-Helmholtz instability in photospheric flows - Effects of coronal heating and structure

A series of hydrodynamic numerical simulations has been used to investigate the nonlinear evolution of driven, subsonic velocity shears under a range of typical photospheric conditions. These calculations show that typical photospheric flows are susceptible to the Kelvin-Helmholtz instability (KHI), with rapid nonlinear growth times that are approximately half of a typical granule lifetime. The KHI produces vortical structures in intergranule lanes comparable to a typical fluxule radius; this is precisely the correct scale for maximum power transfer to the corona.

Karpen, Judith T.↗

The Origin and Early Evolution of Membrane Proteins

Membrane proteins mediate functions that are essential to all cells. These functions include transport of ions, nutrients and waste products across cell walls, capture of energy and its transduction into the form usable in chemical reactions, transmission of environmental signals to the interior of the cell, cellular growth and cell volume regulation. In the absence of membrane proteins, ancestors of cell (protocells), would have had only very limited capabilities to communicate with their environment. Thus, it is not surprising that membrane proteins are quite common even in simplest prokaryotic cells. Considering that contemporary membrane channels are large and complex, both structurally and functionally, a question arises how their presumably much simpler ancestors could have emerged, perform functions and diversify in early protobiological evolution. Remarkably, despite their overall complexity, structural motifs in membrane proteins are quite simple, with a-helices being most common. This suggests that these proteins might have evolved from simple building blocks. To explain how these blocks could have organized into functional structures, we performed large-scale, accurate computer simulations of folding peptides at a water-membrane interface, their insertion into the membrane, self-assembly into higher-order structures and function. The results of these simulations, combined with analysis of structural and functional experimental data led to the first integrated view of the origin and early evolution of membrane proteins.

Pohorille, Andrew↗

Experimental and Computational Study of Sonic and Supersonic Jet Plumes

Study of sonic and supersonic jet plumes are relevant to understanding such phenomenon as jet-noise, plume signatures, and rocket base-heating and radiation. Jet plumes are simple to simulate and yet, have complex flow structures such as Mach disks, triple points, shear-layers, barrel shocks, shock-shear-layer interaction, etc. Experimental and computational simulation of sonic and supersonic jet plumes have been performed for under- and over-expanded, axisymmetric plume conditions. The computational simulation compare very well with the experimental observations of schlieren pictures. Experimental data such as temperature measurements with hot-wire probes are yet to be measured and will be compared with computed values. Extensive analysis of the computational simulations presents a clear picture of how the complex flow structure develops and the conditions under which self-similar flow structures evolve. From the computations, the plume structure can be further classified into many sub-groups. In the proposed paper, detail results from the experimental and computational simulations for single, axisymmetric, under- and over-expanded, sonic and supersonic plumes will be compared and the fluid dynamic aspects of flow structures will be discussed.

Venkatapathy, E.↗

Experimental Verification of the Theoretical Prediction of the Phase Structure of a Ni-Al-Ti-Cr-Cu Alloy

The Bozzolo-Ferrante-Smith (BFS) method for alloys was applied to the study of NiAl-based materials to assess the effect of alloying additions on structure. Ternary, quaternary and even pentalloys based on NiAl with additions of Ti, Cr and Cu were studied and experimental verification of the theoretical predictions including the phase structure of a Ni-Al-Ti-Cr-Cu alloy is presented. Two approaches were used, Monte Carlo simulations to determine low energy structures, and analytical calculations of the energy of high symmetry configurations which give physical insight into preferred structures. The energetics for site occupancy in ternary and quaternary systems were calculated leading to an indirect determination of solubility limits at 0 K. Precipitate formation with information concerning structure and lattice parameter were also 'observed' computationally and the general characteristics of a Ni-Al-Ti-Cr-Cu alloy were correctly predicted. The results indicate that the BFS method for alloys can be a useful tool for alloy design and can be used to complement experimental alloy design programs.

Wilson, A.↗

Computer simulation of screw dislocation in aluminum

The atomic structure in a 110 screw dislocation core for aluminum is obtained by computer simulation. The lattice statics technique is employed since it entails no artificially imposed elastic boundary around the defect. The interatomic potential has no adjustable parameters and was derived from pseudopotential theory. The resulting atomic displacements were allowed to relax in all three dimensions.

Esterling, D. M.↗

Vortex simulation of three-dimensional mixing layers

Spanwise structures of 'nominally' two-dimensional (2D), spatially growing, turbulent mixing layers are simulated numerically by a three-dimensional (3D) vortex method. Small-amplitude 3D disturbances are introduced into an otherwise 2D flow field. Results show that a large-scale spanwise variation of the flow field is produced because of amplification of initial disturbances. Pairs of counterrotating streamwise vortices are formed as a result of stretching of primary spanwise vortices. The streamwise vortices are formed at a fixed spanwise location which depends on initial disturbances. The calculated magnitude of streamwise vorticity is close to that of the spanwise vorticity. The results also suggest that the presence of background disturbances may be essential for the formation of streamwise vortices. The results are in good qualitative agreement with experiments.

Inoue, Osamu↗

Numerical Study of Buoyancy and Different Diffusion Effects on the Structure and Dynamics of Triple Flames

Numerical simulations of 2-D triple flames under gravity force have been implemented to identify the effects of gravity on triple flame structure and propagation properties and to understand the mechanisms of instabilities resulting from both heat release and buoyancy effects. A wide range of gravity conditions, heat release, and mixing widths for a scalar mixing layer are computed for downward-propagating (in the same direction with the gravity vector) and upward-propagating (in the opposite direction of the gravity vector) triple flames. Results of numerical simulations show that gravity strongly affects the triple flame speed through its contribution to the overall flow field. A simple analytical model for the triple flame speed, which accounts for both buoyancy and heat release, is developed. Comparisons of the proposed model with the numerical results for a wide range of gravity, heat release and mixing width conditions, yield very good agreement. The analysis shows that under neutral diffusion, downward propagation reduces the triple flame speed, while upward propagation enhances it. For the former condition, a critical Froude number may be evaluated, which corresponds to a vanishing triple flame speed. Downward-propagating triple flames at relatively strong gravity effects have exhibited instabilities. These instabilities are generated without any artificial forcing of the flow. Instead disturbances are initiated by minute round-off errors in the numerical simulations, and subsequently amplified by instabilities. A linear stability analysis on mean profiles of stable triple flame configurations have been performed to identify the most amplified frequency in spatially developed flows. The eigenfunction equations obtained from the linearized disturbance equations are solved using the shooting method. The linear stability analysis yields reasonably good agreements with the observed frequencies of the unstable triple flames. The frequencies and amplitudes of disturbances increase with the magnitude of the gravity vector. Moreover, disturbances appear to be most amplified just downstream of the premixed branches. The effects of mixing width and differential diffusion are investigated and their roles on the flame stability are studied.

Chen, Jyh-Yuan↗