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DOE OSTI2020

Comparison of Orientation Mapping in SEM and TEM

In this work, multiple experimental configurations for performing nanoscale orientation mapping are compared to determine their fidelity to the true 3D microstructure of a sample. Transmission Kikuchi Diffraction (TKD) experiments in an SEM and nanobeam diffraction (NBD) experiments in a TEM were performed on thin electrodeposited hard Au films with two different microstructures. The Au samples either have a grain size that is >50 nm or <20 nm. The same regions of the samples were measured with TKD apparatuses at 30 kV in an SEM with detectors in the horizontal and vertical configurations and in the TEM at 300 kV. Under the proper conditions, we demonstrate all three configurations can produce data of equivalent quality.Each method has strengths and challenges associated with its application and representation of the true microstructure. The conditions needed to obtain high-quality data for each acquisition method and the challenges associated with each will be discussed.

36 MATERIALS SCIENCE↗

NASA NTRS2005

Knowledge Representation Standards and Interchange Formats for Causal Graphs

In many domains, automated reasoning tools must represent graphs of causally linked events. These include fault-tree analysis, probabilistic risk assessment (PRA), planning, procedures, medical reasoning about disease progression, and functional architectures. Each of these fields has its own requirements for the representation of causation, events, actors and conditions. The representations include ontologies of function and cause, data dictionaries for causal dependency, failure and hazard, and interchange formats between some existing tools. In none of the domains has a generally accepted interchange format emerged. The paper makes progress towards interoperability across the wide range of causal analysis methodologies. We survey existing practice and emerging interchange formats in each of these fields. Setting forth a set of terms and concepts that are broadly shared across the domains, we examine the several ways in which current practice represents them. Some phenomena are difficult to represent or to analyze in several domains. These include mode transitions, reachability analysis, positive and negative feedback loops, conditions correlated but not causally linked and bimodal probability distributions. We work through examples and contrast the differing methods for addressing them. We detail recent work in knowledge interchange formats for causal trees in aerospace analysis applications in early design, safety and reliability. Several examples are discussed, with a particular focus on reachability analysis and mode transitions. We generalize the aerospace analysis work across the several other domains. We also recommend features and capabilities for the next generation of causal knowledge representation standards.

Throop, David R.↗

DOE OSTI2024

On the Generalizability of Time-of-Flight Convolutional Neural Networks for Noninvasive Acoustic Measurements

Bulk wave acoustic time-of-flight (ToF) measurements in pipes and closed containers can be hindered by guided waves with similar arrival times propagating in the container wall, especially when a low excitation frequency is used to mitigate sound attenuation from the material. Convolutional neural networks (CNNs) have emerged as a new paradigm for obtaining accurate ToF in non-destructive evaluation (NDE) and have been demonstrated for such complicated conditions. However, the generalizability of ToF-CNNs has not been investigated. In this work, we analyze the generalizability of the ToF-CNN for broader applications, given limited training data. We first investigate the CNN performance with respect to training dataset size and different training data and test data parameters (container dimensions and material properties). Furthermore, we perform a series of tests to understand the distribution of data parameters that need to be incorporated in training for enhanced model generalizability. This is investigated by training the model on a set of small- and large-container datasets regardless of the test data. We observe that the quantity of data partitioned for training must be of a good representation of the entire sets and sufficient to span through the input space. The result of the network also shows that the learning model with the training data on small containers delivers a sufficiently stable result on different feature interactions compared to the learning model with the training data on large containers. To check the robustness of the model, we tested the trained model to predict the ToF of different sound speed mediums, which shows excellent accuracy. Furthermore, to mimic real experimental scenarios, data are augmented by adding noise. We envision that the proposed approach will extend the applications of CNNs for ToF prediction in a broader range.

47 OTHER INSTRUMENTATION↗

NASA NTRS1984

NASA climate data catalog

This document provides a summary of information available in the NASA Climate Data Catalog. The catalog provides scientific users with technical information about selected climate parameter data sets and the associated sensor measurements from which they are derived. It is an integral part of the Pilot Climate Data System (PCDS), an interactive, scientific management system for locating, obtaining, manipulating, and displaying climate research data. The catalog is maintained in a machine readable representation which can easily be accessed via the PCDS. The purposes, format and content of the catalog are discussed. Summarized information is provided about each of the data sets currently described in the catalog. Sample detailed descriptions are included for individual data sets or families of related data sets.

Reph, M. G.↗

DOE OSTI2024

An open source knowledge graph ecosystem for the life sciences

Translational research requires data at multiple scales of biological organization. Advancements in sequencing and multi-omics technologies have increased the availability of these data, but researchers face significant integration challenges. Knowledge graphs (KGs) are used to model complex phenomena, and methods exist to construct them automatically. However, tackling complex biomedical integration problems requires flexibility in the way knowledge is modeled. Moreover, existing KG construction methods provide robust tooling at the cost of fixed or limited choices among knowledge representation models. PheKnowLator (Phenotype Knowledge Translator) is a semantic ecosystem for automating the FAIR (Findable, Accessible, Interoperable, and Reusable) construction of ontologically grounded KGs with fully customizable knowledge representation. The ecosystem includes KG construction resources (e.g., data preparation APIs), analysis tools (e.g., SPARQL endpoint resources and abstraction algorithms), and benchmarks (e.g., prebuilt KGs). We evaluated the ecosystem by systematically comparing it to existing open-source KG construction methods and by analyzing its computational performance when used to construct 12 different large-scale KGs. With flexible knowledge representation, PheKnowLator enables fully customizable KGs without compromising performance or usability.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗

DOE OSTI2018

Leveraging the checkpoint-restart technique for optimizing CPU efficiency of ATLAS production applications on opportunistic platforms

Data processing applications of the ATLAS experiment, such as event simulation and reconstruction, spend considerable amount of time in the initialization phase. This phase includes loading a large number of shared libraries, reading detector geometry and condition data from external databases, building a transient representation of the detector geometry and initializing various algorithms and services. In some cases the initialization step can take as long as 10-15 minutes. Such slow initialization has a significant negative impact on overall CPU efficiency of the production job, especially when the job is executed on opportunistic, often short-lived, resources such as commercial clouds or volunteer computing. In order to improve this situation, we can take advantage of the fact that ATLAS runs large numbers of production jobs with similar configuration parameters (e.g. jobs within the same production task). This allows us to checkpoint one job at the end of its configuration step and then use the generated checkpoint image for rapid startup of thousands of production jobs. By applying this technique we can bring the initialization time of a job from tens of minutes down to just a few seconds. In addition to that we can leverage container technology for restarting checkpointed applications on the variety of computing platforms, in particular of platforms different from the one on which the checkpoint image was created. We will describe the mechanism of creating checkpoint images of Geant4 simulation jobs with AthenaMP (the multi-process version of the ATLAS data simulation, reconstruction and analysis framework Athena) and the usage of these images for running ATLAS Simulation production jobs on volunteer computing resources (ATLAS@Home) and on Supercomputers.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

NASA NTRS1980

Rocket observations of solar radiation during the eclipse of 26 February 1979

Three Nike Tomahawk rockets were launched in Red Lake, Ontario, one previous to, and two during, the total eclipse of the Sun, for the purpose of studying the atmosphere and its interaction with solar radiation. The method and preliminary results of three experiments that were used to measure solar radiation in the X-ray, Lyman-alpha, and visible parts of the spectrum are described. The instrumentation designed for this investigation is discussed as well as post-flight data processing techniques. The retrieved data were processed to some extent to verify that a valid representation of the solar radiation was obtained. The Lyman-alpha experiment yielded very good results, and preliminary data are included. The visible radiation experiment served as support for the other experiments and also functioned well. Due to a high level of energetic particles during the eclipse, the X-ray data were contaminated and are not presented. However, satellite observations indicate no appreciable level of X-rays from the Sun during the time of the eclipse.

Bliss, H. M.↗

NASA NTRS2004

Unique Approaches to Analysis of Time-Variable Gravity from GRACE

We have developed an innovative analysis strategy for analysis of GRACE data. We have developed a capability to recover local/regional gravity changes using non-global functional representations (Le. surface anomalies vs. global spherical harmonics) h m the GRACE data. Our approach can take regularly or irregularly shaped regions, populate them with surface anomaly blocks of suitable area and solve for the resulting mass flux with respect to a mean field. The surface mass or gravity anomalies benefit from the application of spatial and temporal constraints to add stability to the solution. In this paper we discuss the analysis of four months of GRACE Level 1B data (accelerometry, intersatellite data, attitude information and precise orbits) from July to October 2003, recently released to the GRACE Science Team. We compare and contrast this local approach to gravity recovery, with the more conventional approach using global spherical harmonics. We review simulations of this technique which allow us to pinpoint optimum strategies for applications of this local gravity recovery approach.

Lemoine, Frank G.↗

NASA NTRS1975

A determination of the sea level muon spectrum using accelerator data and some implications

The differential sea-level muon spectrum is calculated from first principle for a pure beam of cosmic-ray protons cascading in the atmosphere by using a representation of the invariant cross section that describes the observed data from 6 GeV to 1500 GeV. This spectrum is compared with the observed muon spectrum to deduce information on the interaction characteristics of nuclei-nuclei collisions.

Badhwar, G. D.↗

NASA NTRS1982

On-line methods for rotorcraft aeroelastic mode identification

The requirements for the on-line identification of rotorcraft aeroelastic blade modes from random response test data are presented. A recursive maximum likelihood (RML) technique is used in conjunction with a bandpass filter to identify isolated blade mode damping and frequency. The RML technique is demonstrated to have excellent convergence characteristics in random measurement noise and random process noise excitation. The RML identification technique uses an ARMA representation for the aeroelastic stochastic system and requires virtually no user interaction while providing accurate confidence bands on the parameter estimates. Comparisons are made with an off-line Newton type maximum likelihood algorithm which uses a state variable model representation. Results are presented from simulation random response data which quantify the identifed parameter convergence behavior for various levels of random excitation which is typical of wind tunnel turbulence levels. The RML technique is applied to hingless rotor test data from the NASA Langley Research Center Helicopter Hover Facility.

Molusis, J. A.↗

NASA NTRS1986

Use of speckle for determining the response characteristics of Doppler imaging radars

An optical model is developed for imaging optical radars such as the SAR on Seasat and the Shuttle Imaging Radar (SIR-B) by analyzing the Doppler shift of individual speckles in the image. The signal received at the spacecraft is treated in terms of a Fresnel-Kirchhoff integration over all backscattered radiation within a Huygen aperture at the earth. Account is taken of the movement of the spacecraft along the orbital path between emission and reception. The individual points are described by integration of the point source amplitude with a Green's function scattering kernel. Doppler data at each point furnishes the coordinates for visual representations. A Rayleigh-Poisson model of the surface scattering characteristics is used with Monte Carlo methods to generate simulations of Doppler radar speckle that compare well with Seasat SAR data SIR-B data.

Tilley, D. G.↗

NASA NTRS2004

Representation of the Geosynchronous Plasma Environment for Spacecraft Charging Calculations

Historically, our ability to predict and postdict surface charging has suffered from both a lack of reliable secondary emission and backscattered electron yields and poor characterization of the plasma environment. One difficulty lies in the common practice of fitting the plasma data to a Maxwellian or Double Maxwellian distribution function, which may not represent the data well for charging purposes. For 13 years Los Alamos National Laboratory (LANL) has been accumulating measurements of electron and proton spectra from Magnetospheric Plasma Analyzer (MPA) instruments aboard a series of geosynchronous satellites. These data provide both a plasma characterization and the potential of the instrument ground. We use electron and ion flux spectra measured by the LANL MPA to examine how the use of different spectral representations of the charged particle environment in computations of spacecraft potentials during magnetospheric substorms affects the accuracy of the results. We calculate the spacecraft potential using both the measured fluxes and several different fits to these fluxes. These flux measurements and fits have been corrected for the difference between the measured and calculated potential. The potentials computed using the measured fluxes, the best available material properties of graphite carbon, and a secondary electron escape fraction of 81%, are within a factor of three of the measured potential for nearly all the data. Using a Kappa fit to the electron distribution function and a Maxwellian fit to the ion distribution function gives agreement similar to the calculations using the actual data. Alternative spectral representations, including Maxwellian and double Maxwellian for both species, lead to less satisfactory agreement between predicted and measured potentials.

Davis, V. A.↗

DOE OSTI2021

Uranium Oxide Synthetic Pathway Discernment through Unsupervised Morphological Analysis

We present a novel unsupervised machine learning method for quantitative representation of scanning electron micrographs and its applications and performance for nuclear forensic analysis of uranium ore concentrates. The method uses a vector quantizing variational autoencoder followed by a histogram operation to encode a micrograph into a single dimensional representation, called the latent vector. The method requires no extant labeling of the data and can be applied over large datasets of micrographs with minimal human interaction. The representations generated are broadly descriptive of each micrograph and the microstructure of the material imaged. In the case of uranium ore concentrate analysis, the representations were amenable to processing reagent and ore concentrate species classification with accuracy of 81:8%, which is competitive with state-of-the-art supervised networks. The representations were also used to classify previously unseen processing routes, were able to classify imaging parameters such as magnification (to 76:0% accuracy), were able to classify fine grained process parameters such as calcining temperature (to 74:4% accuracy), and their informatic properties indicate that they are generally descriptive of the image represented. This method can be applied across microstructure analysis fields to perform quantitative analysis without the need for labor intensive and possibly biased human analysis.

Scanning Electron Microscopy, Vector Quantizing Va↗

NASA NTRS2020

Reaching Broad Audiences from a Large Agency Setting

NASA’s missions, engineering accomplishments, and scientific findings have inspired generations and advanced our understanding of the world we live in. NASA’s Earth science data are acquired by various sources, including satellites, aircraft, and field measurements. Captured data, their by-products, and their visual representations developed by research teams become available within few hours after satellite overpass or processing through a variety of NASA’s imaging, mapping services, and portals. Such online services as the Global Imagery Browse Services (GIBS), Worldview, LANCE, and LAADS DAAC are freely and openly available thanks to NASA’s Earth-Observing Satellite Data and Information Systems (EOSDIS). These services provide access to products created over the last 30 years, support a broad range of users from the scientific community to the general public, and cover a multitude of applications such as basic and applied scientific research, natural hazard and disaster monitoring, and social and educational outreach. In order to illustrate the significance of the overall work, the visualization products, and the broad range of users, we present three case studies: NASA’s Black Marble Product Suite, the Global Imagery Browse Services (GIBS) and Worldview, and the scientific visualization production process to communicate results to the scientific community and the general public.

Helen-Nicole Kostis↗

NASA NTRS2001

Short-Arc Analysis of Intersatellite Tracking Data in a Gravity Mapping Mission

A technique for the analysis of low-low intersatellite range-rate data in a gravity mapping mission is explored. The technique is based on standard tracking data analysis for orbit determination but uses a spherical coordinate representation of the 12 epoch state parameters describing the baseline between the two satellites. This representation of the state parameters is exploited to allow the intersatellite range-rate analysis to benefit from information provided by other tracking data types without large simultaneous multiple data type solutions. The technique appears especially valuable for estimating gravity from short arcs (e.g., less than 15 minutes) of data. Gravity recovery simulations which use short arcs are compared with those using arcs a day in length. For a high-inclination orbit, the short-arc analysis recovers low-order gravity coefficients remarkably well, although higher order terms, especially sectorial terms, are less accurate. Simulations suggest that either long or short arcs of GRACE data are likely to improve parts of the geopotential spectrum by orders of magnitude.

Rowlands, David D.↗

DOE OSTI2021

Artificial generation of representative single Li-ion electrode particle architectures from microscopy data

Accurately capturing the architecture of single lithium-ion electrode particles is necessary for understanding their performance limitations and degradation mechanisms through multi-physics modeling. Information is drawn from multimodal microscopy techniques to artificially generate LiNi 0.5 Mn 0.3 Co 0.2 O 2 particles with full sub-particle grain detail. Statistical representations of particle architectures are derived from X-ray nano-computed tomography data supporting an ‘outer shell’ model, and sub-particle grain representations are derived from focused-ion beam electron backscatter diffraction data supporting a ‘grain’ model. A random field model used to characterize and generate the outer shells, and a random tessellation model used to characterize and generate grain architectures, are combined to form a multi-scale model for the generation of virtual electrode particles with full-grain detail. This work demonstrates the possibility of generating representative single electrode particle architectures for modeling and characterization that can guide synthesis approaches of particle architectures with enhanced performance.

36 MATERIALS SCIENCE↗

DOE OSTI2024

Bridging 20 Years of Soil Organic Matter Frameworks: Empirical Support, Model Representation, and Next Steps

Abstract In the past few decades, there has been an evolution in our understanding of soil organic matter (SOM) dynamics from one of inherent biochemical recalcitrance to one deriving from plant‐microbe‐mineral interactions. This shift in understanding has been driven, in part, by influential conceptual frameworks which put forth hypotheses about SOM dynamics. Here, we summarize several focal conceptual frameworks and derive from them six controls related to SOM formation, (de)stabilization, and loss. These include: (a) physical inaccessibility; (b) organo‐mineral and ‐metal stabilization; (c) biodegradability of plant inputs; (d) abiotic environmental factors; (e) biochemical reactivity and diversity; and (f) microbial physiology and morphology. We then review the empirical evidence for these controls, their model representation, and outstanding knowledge gaps. We find relatively strong empirical support and model representation of abiotic environmental factors but disparities between data and models for biochemical reactivity and diversity, organo‐mineral and ‐metal stabilization, and biodegradability of plant inputs, particularly with respect to SOM destabilization for the latter two controls. More empirical research on physical inaccessibility and microbial physiology and morphology is needed to deepen our understanding of these critical SOM controls and improve their model representation. The SOM controls are highly interactive and also present some inconsistencies which may be reconciled by considering methodological limitations or temporal and spatial variation. Future conceptual frameworks must simultaneously refine our understanding of these six SOM controls at various spatial and temporal scales and within a hierarchical structure, while incorporating emerging insights. This will advance our ability to accurately predict SOM dynamics.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2019

Extraction of Tumor Site from Cancer Pathology Reports using Deep Filters

Purpose: Pathology reports are the primary source of information concerning the millions of cancer cases across the United States. Cancer registries manually process the pathology reports to extract the pertinent information including primary tumor site, behavior, histology, laterality, and grade. Processing a large volume of the pathology reports in a timely manner is a continuing challenge for cancer registries. The purpose of this study is to develop an information extraction pipeline to reliably and efficiently extract reportable information. Method: We have developed a novel inverse-regression (IR) based information extraction pipeline. The inverse-regression based supervised filter has been successfully applied to many application domains. However, its application to the information extraction from unstructured text is hindered primarily by the extreme high-dimensionality of n-gram representations of text. In this study, we attempt to overcome the obstacles by a novel bootstrapping strategy. First, we use an information-theoretic mutual information based filter to discard the excessive and redundant n-gram features. This step reduces the size and improves the condition number of the sample covariance matrix, thus reducing the computational cost and improving the numerical stability of the subsequent inverse-regression step. Then we use localized sliced inverse-regression (LSIR) to learn a low-dimensional discriminatory subspace for information inference. In particular, we use the k-nearest neighbors of an unlabeled pathology report in the learned representation to infer the desired information from the labeled data in a supervised manner. Results: The experiments were conducted on a set of de-identified pathology reports with human expert labels as the ground truth. Our pipeline consistently performed better than or comparable to the best performing state-of-the-art methods while reducing the training and inference times substantially. Conclusion: Our results demonstrate the potential of inverse-regression based information extraction pipeline for reliable and efficient information extraction from unstructured text. The information extracted from the pathology reports can be used along with clinical information, medical imaging, and genomic information to instigate discoveries in cancer research.

Dubey, Abhishek↗