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At least 973 records · Page 54

Reclassification of a Polynucleobacter cosmopolitanus strain isolated from tropical Lake Victoria as Polynucleobacter victoriensis sp. nov.

The genus Polynucleobacter (family Burkholderiaceae ) is phylogenetically subdivided into at least four subclusters. One of those, subcluster PnecC, was recognized as a cryptic species complex. Here we test by comparative genome analyses whether subcluster PnecD, currently solely represented by the species Polynucleobacter cosmopolitanus , also represents such a cryptic species complex. The genome sequences of the two P. cosmopolitanus strains, MWH-MoIso2T and MWH-VicM1, were determined. The latter strain was also characterized in the previous description of P. cosmopolitanus . These two strains originate from a temperate lake located in Austria and from the large tropical Lake Victoria located in East Africa, respectively. Strains MWH-MoIso2T and MWH-VicM1 possess quite small genomes of 1.78 and 1.63 Mbp, respectively, and share similar G+C values of 44.1 and 43.1 mol%, respectively. Both strains encode only a single copy of the ribosomal operon, and their 16S rRNA genes differ only in four positions, equalling a sequence similarity of 99.74 %. Both genomes possess characteristics indicating evolutionary genome streamlining, such as high coding densities of 93.9 and 94.6 % of bases, respectively. Average nucleotide identity (ANI) comparisons of the genomes of the two strains resulted in a value of 78.4 %, suggesting that each of the strains represents a separate species. Our investigation suggests that PnecD represents an additional cryptic species complex within the genus Polynucleobacter that was not resolved by 16S rRNA gene sequence analyses. We propose reclassification of strain MWH-VicM1 as Polynucleobacter victoriensis sp. nov., with type strain MWH-VicM1T(=DSM 21486T=JCM 32005T).

59 BASIC BIOLOGICAL SCIENCES↗

Automatic inspection of program state in an uncooperative environment

Abstract The program state is formed by the values that the program manipulates. These values are stored in the stack, in the heap, or in static memory. The ability to inspect the program state is useful as a debugging or as a verification aid. Yet, there exists no general technique to insert inspection points in type‐unsafe languages such as C or C++. The difficulty comes from the need to traverse the memory graph in a so‐called uncooperative environment. In this article, we propose an automatic technique to deal with this problem. We introduce a static code transformation approach that inserts in a program the instrumentation necessary to report its internal state. Our technique has been implemented in LLVM. It is possible to adjust the granularity of inspection points trading precision for performance. In this article, we demonstrate how to use inspection points to debug compiler optimizations; to augment benchmarks with verification code; and to visualize data structures.

Magalhães, José Wesley de Souza↗

Integrated modeling of boron powder injection for real-time plasma-facing component conditioning

An integrated modeling framework for investigating the application of solid boron (B) powder injection for real-time surface conditioning of plasma-facing components (PFCs) in tokamak environments is presented. Utilizing the DIII-D impurity powder dropper (IPD) setup, this study simulates B powder injection scenarios ranging from milligrams to tens of milligrams per second, corresponding to boron flux rates of 10 20 –10 21 B/s in standard L-mode conditions. The comprehensive modeling approach combines EMC3-EIRENE for simulating the deuterium plasma background and the Dust Injection Simulator (DIS) for the ablation and transport of the boron powder particles. EMC3 trace impurity fluid modeling results show substantial boron transport to the inboard lower divertor, predominantly influenced by the main ion plasma flow. The dependency on powder particle size (5-250 µm) was found to be insignificant for the scenario considered. The effects of erosion and redeposition were considered to reconcile the discrepancies with experimental observations, which saw substantial deposition on the outer divertor plasma-facing components. For this purpose, the WallDYN3D code was updated to include boron sources within the plasma domain and integrated into the modeling framework. The mixed-material migration modeling shows evolving boron deposition patterns, suggesting the formation of mixed B-C layers or predominantly B coverage depending on the powder mass flow rate. While the modeling outcomes at lower B injection rates tend to align with DIII-D experimental observations, the prediction of near-pure boron layers at higher rates has yet to be experimentally verified in the carbon environment of the DIII-D tokamak. The extensive reach of boron layers found in the modeling suggests the need for modeling that encompasses the entire wall geometry for more accurate experimental correlations. This integrated approach sets a precedent for analyzing and applying real-time in-situ boron coating techniques in advanced tokamak scenarios, potentially extendable to ITER.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Plant roots alter microbial functional genes supporting root litter decomposition

Decomposition of soil organic carbon is central to the global carbon cycle and profoundly affected by plant roots. While root “priming” of decomposition has been extensively investigated, it is not known how plants alter the molecular ecology of soil microbial decomposers. We disentangled the effects of Avena fatua, a common annual grass, on 13 C-labeled root litter decomposition and quantified multiple genetic characteristics of soil bacterial and fungal communities. In our study, plants consistently suppressed rates of root litter decomposition. Microbes from planted soils had relatively more genes coding for low molecular weight compound degradation enzymes, while those from unplanted had more macromolecule degradation genes. Higher abundances of “water stress” genes in planted soils suggested that microbes experienced plant-induced water stress. We developed a conceptual model based on Mantel analyses of our extensive data set. This model indicates that plant root effects on the multiple soil environmental and microbial mechanisms involved in root litter decomposition act through changing the functional gene profiles of microbial decomposers living near plant roots.

59 BASIC BIOLOGICAL SCIENCES↗

Status of Metallic Structural Materials for Molten Salt Reactors

In the US and around the world, significant interest surrounds development and deployment of nuclear systems using molten salts to transfer heat. Several configurations are being explored, including the use of fluoride salts either as the primary coolant of a reactor with solid fuel or with the fissile material dissolved in the salt. Molten Salt Reactors (MSRs) with fluoride salt typically have a thermal neutron spectrum. There are also fast-spectrum reactors that could use chloride salts to transfer heat. As a result of operation of the Molten Salt Reactor Experiment (MSRE) at Oak Ridge National Laboratory during the 1960s, a system with uranium fuel dissolved in a fluoride-salt medium is the most well-established technology. A nickel alloy with about 6%Cr and molybdenum as a solid solution strengthening agent was developed and deployed for all structural applications in this reactor. The alloy was commercialized as Hastelloy N. During these experiments and in post-decommissioning characterization of material behavior, it was determined that the most significant challenges for structural materials are embrittlement, from helium introduced by transmutation of Ni, and corrosion and grain boundary embrittlement from the fission product tellurium. The MSRE had an outlet temperature of approximately 650°C. The mechanical properties of Hastelloy N are not sufficient to support long-term operation of an MSR above this temperature. Qualification of a material for use in the ASME Boiler and Pressure Vessel Code, Section III, “Rules for Construction of Nuclear Facility Components,” Division 5, “High Temperature Reactors,” will facilitate licensing with the Nuclear Regulatory Commission. Hastelloy N has not been qualified for use in nuclear construction, and significant additional characterization would be required for Code qualification. Given that this alloy is susceptible to He embrittlement and has limited high-temperature strength, it is not recommended that Code qualification be pursued. Instead, it is recommended that a systematic development program be initiated to develop new nickel alloys that contain a fine, stable dispersion of intermetallic particles to trap He at the interface between the matrix and particle and with increased solid solution strengthening from addition of refractory elements. Extensive screening of attractive alloy compositions for elevated temperature strength, microstructural stability, weldability, and resistance to He embrittlement (characterized using ion implantation) will lead to an alloy down-selection for commercialization and Code qualification.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Predictive Contaminant Transport Simulation with the P2R Model for the Composite Analysis Base Case

In order to meet the requirements of U.S. Department of Energy (DOE) in DOE O 435.1 Chg. 1, Radioactive Waste Management, a composite analysis (CA) must be completed for the Central Plateau at the Hanford Site. The updated Hanford Site CA requires estimates of fate and transport of radionuclides in the groundwater from multiple sources within and downgradient of the Central Plateau. Numerical simulations using the MT3D-MST computer code were conducted to evaluate the fate and transport of existing distributions of 16 radionuclides as identified in CP-62184, Hanford Site Composite Analysis: Radionuclide Selection for Groundwater Pathway Evaluation: tritium (H-3), carbon-14 (C-14), chloride- 36 (Cl-36), strontium-90 (Sr-90), technetium-99 (Tc-99), rhenium-187 (Re-187), radium-226 (Ra-226), thorium-230 (Th-230), uranium-232 (U-232), uranium-232 (U-232), uranium-233 (U-233), uranium-234 (U-234), uranium-235 (U-235), uranium-236 (U-236), neptunium-237 (Np-237), and uranium-238 (U- 238). This document details the application of the P2R Model version 8.3 to predict the fate and transport of contaminants in groundwater on the Central Plateau for the 10,052 year simulation to support the CA. The simulation of fate and transport of contaminants reported in this environmental calculation file (ECF) will support dose predictions as part of the updated Hanford Site CA.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Discovery of a novel filamentous prophage in the genome of the Mimosa pudica microsymbiont Cupriavidus taiwanensis STM 6018

Integrated virus genomes (prophages) are commonly found in sequenced bacterial genomes but have rarely been described in detail for rhizobial genomes. Cupriavidus taiwanensis STM 6018 is a rhizobial Betaproteobacteria strain that was isolated in 2006 from a root nodule of a Mimosa pudica host in French Guiana, South America. Here we describe features of the genome of STM 6018, focusing on the characterization of two different types of prophages that have been identified in its genome. The draft genome of STM 6018 is 6,553,639 bp, and consists of 80 scaffolds, containing 5,864 protein-coding genes and 61 RNA genes. STM 6018 contains all the nodulation and nitrogen fixation gene clusters common to symbiotic Cupriavidus species; sharing >99.97% bp identity homology to the nod / nif / noeM gene clusters from C. taiwanensis LMG19424 T and “ Cupriavidus neocalidonicus” STM 6070. The STM 6018 genome contains the genomes of two prophages: one complete Mu-like capsular phage and one filamentous phage, which integrates into a putative dif site. This is the first characterization of a filamentous phage found within the genome of a rhizobial strain. Further examination of sequenced rhizobial genomes identified filamentous prophage sequences in several Beta-rhizobial strains but not in any Alphaproteobacterial rhizobia.

59 BASIC BIOLOGICAL SCIENCES↗

Heavy-Duty Electric Fleet Depot Charging Load Profiles & Substation Load Integration Assessment Results

This data set includes the 24-hour fleet depot charging load profiles (15-min. average demand) and substation load integration assessment results produced for the study, "Heavy-Duty Truck Electrification and the Impacts of Depot Charging on Electricity Distribution Systems", published in 2021 (https://doi.org/10.1038/s41560-021-00855-0). The code developed to generate these load profiles is publicly available at https://github.com/NREL/hdev-depot-charging-2021. Please cite as: Borlaug, B., Muratori, M., Gilleran, M., Woody, D., Muston, W., Canada, T., Ingram, A., Gresham, H., and McQueen, C., (2021). "Heavy-Duty Truck Electrification and the Impacts of Depot Charging on Electricity Distribution Systems". https://doi.org/10.1038/s41560-021-00855-0.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Detailed Evaluation of Electric Demand Load Shifting Potential of Heat Pump Water Heaters

Future utilities will emphasize home appliances to reduce greenhouse gas emissions while providing electric load shifting and demand profile management. Heat pump water heaters (HPWH) have demonstrated the ability to cut water heating energy by more than 65% compared with conventional electric resistance waters (ERWH). Laboratory research was conducted on the load shifting potential of grid-connected heat pump water heaters (HPWH), compared to ERWHs. Testing applied different CTA-2045 command designs. Highly-controlled laboratory experiments were conducted on one ERWH and four HPWHs, including a prototype incorporating the new CTA-2045-B protocol feature allowing ‘advanced’ load up above the tank setpoint. The prototype unit with the B-protocol increased tank temperature by 15oF (8.3C) under the advanced load up providing an increase of 1.8 kWh of storage for a 50-gallon (189 liter) tank. The prototype includes a built-in mixing valve to meet anti-scalding codes. With the load-shaping ability of CTA-2045-B, utilities might be able to store excess renewable energy in connected tanks when renewable wind and solar resource production is high. Tests were performed under baseline conditions (no load shift) and under several load-shifting schemes, including load up and advanced load up, ahead of shed commands. Grid-connected HPWHs reduced peak demand by as much as 0.5 kW, depending on tank volume, time of day, control scheme, and draw profile.

heat pump water heater, Demand flexibility, load s↗

Comparisons of Nodal diffusion and whole-core transport methods for multiple cycles of a small Light water reacto

As part of a cooperative research and development agreement between the US department of Energy's Oak Ridge National Laboratory and Holtec International subsidiary SMR LLC, core simulator models of the SMR-160, a light water-cooled and -moderated, natural circulation, small modular reactor, were developed and compared. The model results indicate pin-by-pin power histories, critical boron concentration, and other key performance indicators useful for developing multi-cycle core loading patterns. One model uses industry standard nodal methods with a simple thermal-hydraulics solution, and the other uses an advanced deterministic neutronics solver with a coupled subchannel calculation. The goals of the comparison are to provide the reactor designer with a detailed and coupled core physics reference solution, inform the reactor designer of nodal model best practices based on the code-to-code comparison, and set up a workflow for performing subsequent detailed core simulator calculations. The results of this work will be used in the development of coupled neutronic, thermal hydraulic, and fuel performance models for advanced analysis of the SMR-160. (authors)

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

Comparison of tungsten versus molybdenum for double shell capsules using machine learning design optimization

Double shell targets are an alternative ignition platform for inertial confinement fusion. One design consideration for double shell targets is the choice of inner shell material to help trap radiation emitted by the hot fuel to aid ignition. Materials such as molybdenum and tungsten are of interest for the inner shell layer of the targets. While molybdenum has a lower density that could inhibit instability growth and allow for radiography and code benchmarking, tungsten has a higher density that could provide more compression and confinement. These tradeoffs have been explored using optimized designs for each material. Our previous work [Vazirani et al., “Coupling 1D xRAGE simulations with machine learning for graded inner shell design optimization in double shell capsules,” Phys. Plasmas 28, 122709 (2021); Vazirani et al., “Coupling multi-fidelity xRAGE with machine learning for graded inner shell design optimization in double shell capsules,” Phys. Plasmas 30, 062704 (2023); and Vazirani et al., “Bayesian batch optimization for molybdenum versus tungsten inertial confinement fusion double shell target design,” Stat. Anal. Data Min. 17, e11698 (2024)] resulted in a multi-fidelity Bayesian optimization framework to find yield-optimized double shell target geometries. By leveraging simulations of varying fidelities (one-dimensional and two-dimensional) to inform one another, the multi-fidelity optimization was able to optimize a design in the highest fidelity with significantly fewer simulations than would be used in a systematic parameter scan. In this work, we apply the multi-fidelity Bayesian optimization to explore the optimized designs of double shell targets with molybdenum and tungsten inner shells as well as the physics producing the high performing implosions. A physics exploration of all the simulations used in this study shows trends in designs that contribute to high yields, ion temperatures, and fuel areal densities. Comparison of molybdenum and tungsten simulations shows that they can produce similar implosion conditions with different geometries, which would be important to study in experiments. Graded density layers produce varying performances with the two materials but continue to be of interest for future studies along with studies of doped inner shell materials and applied surface roughness.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Evaluation of the Mechanical Properties of Cast and Wrought CF8C-Plus Relevant to ASME Code Case Qualification

The mechanical behavior of a cast form of an advanced austenitic stainless steel, CF8C-Plus, is compared with that of its wrought equivalent in terms of both tensile and creep-rupture properties and estimated allowable stress values for pressurized service at temperatures up to about 850°C. A traditional Larson-Miller parametric model is used to analyze the creep-rupture data and to predict long-term lifetimes for comparison of the two alloy types. The cast CF8C-Plus exhibited lower yield and tensile strengths, but higher creep strength compared to its wrought counterpart. Two welding methods, shielded-metal-arc welding (SMAW) and gas-metal-arc welding, met the weld qualification acceptance criteria in ASME BPVC Section IX for the cast CF8C-Plus. However, for the wrought CF8C-Plus, while SMAW and gas-tungsten-arc welding passed the tensile acceptance criteria, they failed the side bend tests due to lack of fusion or weld metal discontinuities.

Chen, Xiang↗

Activation of lead coolant in Westinghouse lead fast reactor

The Westinghouse Lead-cooled Fast Reactor (LFR) is a medium-sized, passively safe, scalable reactor being developed by Westinghouse in collaboration with domestic and international organizations with the primary goals of reducing front-end capital cost and generating flexible and cost-competitive electricity while satisfying the highest standards in terms of safety and sustainability. An important aspect of new plant design is an assessment of activation level of its components so that an appropriate nuclear waste management plan can be established. As lead coolant is a distinguishing design feature of the LFR, its activation due to irradiation and the implications on establishing an appropriate waste disposal approach are important for engagement of project stakeholders, customers and nuclear safety regulators. This paper provides a brief description of the Westinghouse LFR design, a background on lead activation phenomenology, and then describes the methodology used for lead activation analysis performed with the computer code Serpent 2. It was determined that impurities naturally occurring in lead have the biggest contribution to lead activation. Corrosion and erosion products from the components immersed in lead can also be important contributors to lead activity and their impact can be limited by appropriate selection of materials and operating conditions. Polonium isotopes, resulting from bismuth generated from lead irradiation and its impurities, bring a notable contribution to the inhalation and ingestion doses during the plant operation and in the first years after the plant shutdown. However, it is not by far as important as for lead-bismuth coolant.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

Exploiting graphical processing units to enable quantum chemistry calculation of large solvated molecules with conductor-like polarizable continuum models

The conductor–like polarizable continuum model (C–PCM) with switching/Gaussian smooth discretization is a widely used implicit solvation model in quantum chemistry. We have previously implemented C–PCM solvation for Hartree–Fock (HF) and density functional theory (DFT) on graphical processing units (GPUs), enabling the quantum mechanical treatment of large solvated biomolecules. Here, we first propose a GPU–based algorithm for the PCM conjugate gradient linear solver that greatly improves the performance for very large molecules. The overhead for PCM–related evaluations now consumes less than 15% of the total runtime for DFT calculations on large molecules. Second, we demonstrate that our algorithms tailored for ground state C–PCM are transferable to excited state properties. Using a single GPU, our method evaluates the analytic gradient of the linear response PCM time–dependent density functional theory energy up to 80× faster than a conventional central processing unit (CPU)–based implementation. In addition, our C–PCM algorithms are transferable to other methods that require electrostatic potential (ESP) evaluations. For example, we achieve speed–ups of up to 130× for restricted ESP–based atomic charge evaluations, when compared to CPU–based codes. As a result, we also summarize and compare the different PCM cavity discretization schemes used in some popular quantum chemistry packages as a reference for both users and developers.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Multiphysics for nuclear energy applications using a cohesive computational framework

With the recent development of advanced numerical algorithms, software design, and low-cost high-performance computer hardware, reliance on coupled multiphysics to predict the behavior of complex physical systems is beginning to become standard practice. This is especially true in nuclear energy applications where strong nonlinear interdependencies exist between reactor physics, radiation transport, multi-scale nuclear fuels performance, thermal fluids, etc. Resolving these nonlinear dependencies requires choices in multiphysics software approaches. Two main multiphysics modeling and simulation approaches have emerged. The first is based upon "code coupling" where disparate physics codes of different software design, code languages, and spatial and temporal integration schemes are coupled together with relatively complex data passing interfaces. The second multiphysics software approach is to employ a "cohesive" framework where all physics applications are developed with a common software design, i.e., data structures, syntax, input format, integrated spatial and temporal discretization schemes, etc. In this paper we present the Multiphysics Object-Oriented Simulation Environment (MOOSE) development and runtime framework and describe the framework's cohesive modeling and simulation multiphysics approach. Then, a "cohesive-like" extension of the MOOSE framework is presented where MOOSE-based physics software applications are efficiently coupled to non-MOOSE (external) physics codes to form multiphysics applications using MOOSE's unique interface capabilities. Finally, several examples of MOOSE's cohesive and cohesive-like multiphysics applications will be demonstrated. These multiphysics demonstrations will incorporate both MOOSE-based applications and external codes, including Nek5000, RELAP-7, TRACE, BISON, and Pronghorn.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Nanographene Coupled with Interfacial Pyrene Derivatives for Thermally Stable Perovskite Solar Cells

Although high-efficiency perovskite solar cells (PSCs) have been achieved using a hole-extracting material, spiro-MeOTAD, thermal stability has been unattainable due to the low glass transition temperature of spiro-MeOTAD and additives therein. In this paper we report on the use of nanographene-based hole-transporting materials coupled with a pyrene derivative as an interface modifier for thermally stable and high efficiency PSCs. Asymmetric methyl and methoxy groups are introduced in the diphenylamino group that is attached to the hexa-peri-hexabenzocoronene (HBC) nanographene core, coded HBC-DPAMeOMe. 1-Pyrenemethylammonium iodide is coupled to enhance the chemical interaction between perovskite and HBC-DPAMeOMe, which leads to a power conversion efficiency over 23%. A thermal stability test at 85 degrees C for 1000 h reveals that 83.6% of the initial efficiency (23.04% --> 19.25%) is maintained for the device with HBC-DPAMeOMe, while a significant degradation from 20.69% to 5.08% is observed for the device with spiro-MeOTAD. Nanographene-based hole conductors shed light on the thermal stability issue in PSCs.

14 SOLAR ENERGY↗

NCAR Release of CAM‐SE in CESM2.0: A Reformulation of the Spectral Element Dynamical Core in Dry‐Mass Vertical Coordinates With Comprehensive Treatment of Condensates and Energy

Abstract It is the purpose of this paper to provide a comprehensive documentation of the new NCAR (National Center for Atmospheric Research) version of the spectral element (SE) dynamical core as part of the Community Earth System Model (CESM2.0) release. This version differs from previous releases of the SE dynamical core in several ways. Most notably the hybrid sigma vertical coordinate is based on dry air mass, the condensates are dynamically active in the thermodynamic and momentum equations (also referred to as condensate loading), and the continuous equations of motion conserve a more comprehensive total energy that includes condensates. Not related to the vertical coordinate change, the hyperviscosity operators and the vertical remapping algorithms have been modified. The code base has been significantly reduced, sped up, and cleaned up as part of integrating SE as a dynamical core in the CAM (Community Atmosphere Model) repository rather than importing the SE dynamical core from High‐Order Methods Modeling environment as an external code.

54 ENVIRONMENTAL SCIENCES↗