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At least 973 records · Page 54

NeMO-Net & Fluid Lensing: The Neural Multi-Modal Observation & Training Network for Global Coral Reef Assessment Using Fluid Lensing Augmentation of NASA EOS Data

We present preliminary results from NASA NeMO-Net, the first neural multi-modal observation and training network for global coral reef assessment. NeMO-Net is an open-source deep convolutional neural network (CNN) and interactive active learning training software in development which will assess the present and past dynamics of coral reef ecosystems. NeMO-Net exploits active learning and data fusion of mm-scale remotely sensed 3D images of coral reefs captured using fluid lensing with the NASA FluidCam instrument, presently the highest-resolution remote sensing benthic imaging technology capable of removing ocean wave distortion, as well as hyperspectral airborne remote sensing data from the ongoing NASA CORAL mission and lower-resolution satellite data to determine coral reef ecosystem makeup globally at unprecedented spatial and temporal scales. Aquatic ecosystems, particularly coral reefs, remain quantitatively misrepresented by low-resolution remote sensing as a result of refractive distortion from ocean waves, optical attenuation, and remoteness. Machine learning classification of coral reefs using FluidCam mm-scale 3D data show that present satellite and airborne remote sensing techniques poorly characterize coral reef percent living cover, morphology type, and species breakdown at the mm, cm, and meter scales. Indeed, current global assessments of coral reef cover and morphology classification based on km-scale satellite data alone can suffer from segmentation errors greater than 40%, capable of change detection only on yearly temporal scales and decameter spatial scales, significantly hindering our understanding of patterns and processes in marine biodiversity at a time when these ecosystems are experiencing unprecedented anthropogenic pressures, ocean acidification, and sea surface temperature rise. NeMO-Net leverages our augmented machine learning algorithm that demonstrates data fusion of regional FluidCam (mm, cm-scale) airborne remote sensing with global low-resolution (m, km-scale) airborne and spaceborne imagery to reduce classification errors up to 80% over regional scales. Such technologies can substantially enhance our ability to assess coral reef ecosystems dynamics.

satellite data↗

NASA NeMO-Net

We present preliminary results from NASA NeMO-Net, the first neural multi-modal observation and training network for global coral reef assessment. NeMO-Net is an open-source deep convolutional neural network (CNN) and interactive active learning training software in development which will assess the present and past dynamics of coral reef ecosystems. NeMO-Net exploits active learning and data fusion of mm-scale remotely sensed 3D images of coral reefs captured using fluid lensing with the NASA FluidCam instrument, presently the highest-resolution remote sensing benthic imaging technology capable of removing ocean wave distortion, as well as hyperspectral airborne remote sensing data from the ongoing NASA CORAL mission and lower-resolution satellite data to determine coral reef ecosystem makeup globally at unprecedented spatial and temporal scales. Aquatic ecosystems, particularly coral reefs, remain quantitatively misrepresented by low- resolution remote sensing as a result of refractive distortion from ocean waves, optical attenuation, and remoteness. Machine learning classification of coral reefs using FluidCam mm-scale 3D data show that present satellite and airborne remote sensing techniques poorly characterize coral reef percent living cover, morphology type, and species breakdown at the mm, cm, and meter scales. Indeed, current global assessments of coral reef cover and morphology classification based on km-scale satellite data alone can suffer from segmentation errors greater than 40%, capable of change detection only on yearly temporal scales and decameter spatial scales, significantly hindering our understanding of patterns and processes in marine biodiversity at a time when these ecosystems are experiencing unprecedented anthropogenic pressures, ocean acidification, and sea surface temperature rise. NeMO-Net leverages our augmented machine learning algorithm that demonstrates data fusion of regional FluidCam (mm, cm-scale) airborne remote sensing with global low-resolution (m, km-scale) airborne and spaceborne imagery to reduce classification errors up to 80% over regional scales. Such technologies can substantially enhance our ability to assess coral reef ecosystems dynamics.

NASA↗

Alaska Ecological Conservation: Using NASA Earth Observations to Identify Recent Changes in River Ice Phenology and Its Impacts on Caribou Migration

Each fall, caribou (Rangifer tarandus) in the Western Arctic Herd migrate hundreds of kilometers across northwestern Alaska to acquire seasonal resources and reach wintering grounds. Various rivers intersect migration paths, and caribou can only cross over open water or high-ice extents but are unable to cross rivers in stages of partial freezing. Recent temperature increases in Alaska can alter the timing and duration of ice formation periods, impeding migratory patterns. The Massachusetts NASA DEVELOP team partnered with the National Park Service in Alaska to detect river ice onset dates and formation periods using Landsat 8 Operational Land Imager and Landsat 9 Operational Land Imager-2, Sentinel-1 C-band Synthetic Aperture Radar and Sentinel-2A/B MultiSpectral Instrument imagery in Google Earth Engine. This feasibility analysis measured ice coverage using the Normalized Difference Infrared Index, Relative Difference River Ice, and Vertical-Vertical/Vertical-Horizontal backscatter values based on the spectral and surface characteristics of rivers. The team produced annual freezing timelines, time series plots, and maps at three river stretches to analyze river ice phenology changes. Radar imagery assessed ice coverage more accurately, while optical imagery better identified ice onset dates. Meanwhile indices were unable to robustly establish ice formation thresholds across the study period. These study results can help the National Park Service to better evaluate spatiotemporal migratory shifts and contextualize recent regional caribou declines.

river phenology↗

Optical Image Subtraction

Report reviews optical image subtraction techniques developed during years 1975 through 1985. Useful in such disciplines as studies of earth resources, meteorology, automatic surveillance, pattern recognition, studies of urban growth, and compression of bandwidth in communication systems. Describes following real-time techniques: source encoding, polarization modulation, pseudocolor image-difference detection, holographic-shear-lens technique, and nonlinear electro-optics. Reported non-real-time image-subtraction techniques are following, all of which involve intensity subtraction: speckle-diffuser encoding, speckle-pattern encoding, halftone-screen encoding,and polarization-shifted carrier encoding. Offers an attractive alternative to digital electronic image subtraction, is faster and treats all parts of images simultaneously.

Liu, Hua-Kuang↗

Metabolome patterns identify active dechlorination in bioaugmentation consortium SDC-9™

Ultra-high performance liquid chromatography–high-resolution mass spectrometry (UPHLC–HRMS) is used to discover and monitor single or sets of biomarkers informing about metabolic processes of interest. The technique can detect 1000’s of molecules (i.e., metabolites) in a single instrument run and provide a measurement of the global metabolome, which could be a fingerprint of activity. Despite the power of this approach, technical challenges have hindered the effective use of metabolomics to interrogate microbial communities implicated in the removal of priority contaminants. Herein, our efforts to circumvent these challenges and apply this emerging systems biology technique to microbiomes relevant for contaminant biodegradation will be discussed. Chlorinated ethenes impact many contaminated sites, and detoxification can be achieved by organohalide-respiring bacteria, a process currently assessed by quantitative gene-centric tools (e.g., quantitative PCR). This laboratory study monitored the metabolome of the SDC-9™ bioaugmentation consortium during cis-1,2-dichloroethene (cDCE) conversion to vinyl chloride (VC) and nontoxic ethene. Untargeted metabolomics using an UHPLC-Orbitrap mass spectrometer and performed on SDC-9™ cultures at different stages of the reductive dechlorination process detected ~10,000 spectral features per sample arising from water-soluble molecules with both known and unknown structures. Multivariate statistical techniques including partial least squares-discriminate analysis (PLSDA) identified patterns of measurable spectral features (peak patterns) that correlated with dechlorination (in)activity, and ANOVA analyses identified 18 potential biomarkers for this process. Statistical clustering of samples with these 18 features identified dechlorination activity more reliably than clustering of samples based only on chlorinated ethene concentration and Dhc 16S rRNA gene abundance data, highlighting the potential value of metabolomic workflows as an innovative site assessment and bioremediation monitoring tool.

environmental monitoring↗

SeekAView: An Intelligent Dimensionality Reduction Strategy for Navigating High-Dimensional Data Spaces

Dealing with the curse of dimensionality is a key challenge in high-dimensional data visualization. We present SeekAView to address three main gaps in the existing research literature. First, automated methods like dimensionality reduction or clustering suffer from a lack of transparency in letting analysts interact with their outputs in real-time to suit their exploration strategies. The results often suffer from a lack of interpretability, especially for domain experts not trained in statistics and machine learning. Second, exploratory visualization techniques like scatter plots or parallel coordinates suffer from a lack of visual scalability: it is difficult to present a coherent overview of interesting combinations of dimensions. Third, the existing techniques do not provide a flexible workflow that allows for multiple perspectives into the analysis process by automatically detecting and suggesting potentially interesting subspaces. In SeekAView we address these issues using suggestion based visual exploration of interesting patterns for building and refining multidimensional subspaces. Compared to the state-of-the-art in subspace search and visualization methods, we achieve higher transparency in showing not only the results of the algorithms, but also interesting dimensions calibrated against different metrics. We integrate a visually scalable design space with an iterative workflow guiding the analysts by choosing the starting points and letting them slice and dice through the data to find interesting subspaces and detect correlations, clusters, and outliers. We present two usage scenarios for demonstrating how SeekAView can be applied in real-world data analysis scenarios.

Krause, Josua↗

Detection of Forced Change Within Combined Climate Fields Using Explainable Neural Networks

Abstract Assessing forced climate change requires the extraction of the forced signal from the background of climate noise. Traditionally, tools for extracting forced climate change signals have focused on one atmospheric variable at a time, however, using multiple variables can reduce noise and allow for easier detection of the forced response. Following previous work, we train artificial neural networks to predict the year of single‐ and multi‐variable maps from forced climate model simulations. To perform this task, the neural networks learn patterns that allow them to discriminate between maps from different years—that is, the neural networks learn the patterns of the forced signal amidst the shroud of internal variability and climate model disagreement. When presented with combined input fields (multiple seasons, variables, or both), the neural networks are able to detect the signal of forced change earlier than when given single fields alone by utilizing complex, nonlinear relationships between multiple variables and seasons. We use layer‐wise relevance propagation, a neural network explainability tool, to identify the multivariate patterns learned by the neural networks that serve as reliable indicators of the forced response. These “indicator patterns” vary in time and between climate models, providing a template for investigating inter‐model differences in the time evolution of the forced response. This work demonstrates how neural networks and their explainability tools can be harnessed to identify patterns of the forced signal within combined fields.

54 ENVIRONMENTAL SCIENCES↗

cWINNOWER algorithm for finding fuzzy dna motifs

The cWINNOWER algorithm detects fuzzy motifs in DNA sequences rich in protein-binding signals. A signal is defined as any short nucleotide pattern having up to d mutations differing from a motif of length l. The algorithm finds such motifs if a clique consisting of a sufficiently large number of mutated copies of the motif (i.e., the signals) is present in the DNA sequence. The cWINNOWER algorithm substantially improves the sensitivity of the winnower method of Pevzner and Sze by imposing a consensus constraint, enabling it to detect much weaker signals. We studied the minimum detectable clique size qc as a function of sequence length N for random sequences. We found that qc increases linearly with N for a fast version of the algorithm based on counting three-member sub-cliques. Imposing consensus constraints reduces qc by a factor of three in this case, which makes the algorithm dramatically more sensitive. Our most sensitive algorithm, which counts four-member sub-cliques, needs a minimum of only 13 signals to detect motifs in a sequence of length N = 12,000 for (l, d) = (15, 4). Copyright Imperial College Press.

Evaluation Studies↗

Phylodynamics of SARS-CoV-2 Lineages B.1.1.7, B.1.1.529 and B.1.617.2 in Nigeria Suggests Divergent Evolutionary Trajectories

Background: The early months of the COVID-19 pandemic were characterized by high transmission rates and mortality, compounded by the emergence of multiple SARS-CoV-2 lineages, including Variants of Concern (VOCs). This study investigates the phylodynamic and spatio-temporal trends of VOCs during the peak of the pandemic in Nigeria. Methods: Whole-genome sequencing (WGS) data from three major VOCs circulating in Nigeria, B.1.1.7 (Alpha), B.1.617.2 (Delta), and B.1.1.529 (Omicron), were analyzed using tools such as Nextclade, R Studio v 4.2.3, and BEAST X v 10.5.0. The spatial distribution, evolutionary history, viral ancestral introductions, and geographic dispersal patterns were characterized. Results: Three major lineages following WHO nomenclature were identified: Alpha, Delta, and Omicron. The Delta variant exhibited the widest geographic spread, detected in 14 states, while the Alpha variant was the least distributed, identified in only eight states but present across most epidemiological weeks studied. Evolutionary rates varied slightly, with Alpha exhibiting the slowest rate (2.66 × 10 −4 substitutions/site/year). Viral population analyses showed distinct patterns: Omicron sustained elevated population growth over time, while Delta declined after initial expansion. The earliest Times to Most Recent Common Ancestor (TMRCA) were consistent with the earliest outbreaks of SARS-CoV-2 globally. Geographic transmission analysis indicated a predominant coastal-to-inland spread for all variants, with Omicron showing the most diffuse dispersal, highlighting commercial routes as significant drivers of viral diffusion. Conclusion: The SARS-CoV-2 epidemic in Nigeria was characterized by multiple variant introductions and a dominant coastal-to-inland spread, emphasizing that despite lockdown measures, commercial trade routes played a critical role in viral dissemination. These findings provide insights into pandemic control strategies and future outbreak preparedness.

Nigeria↗

Doubling of U.S. Population Exposure to Climate Extremes by 2050

We quantify historical and projected trends in the population exposure to climate extremes as measured by the United States National Center for Environmental Information Climate Extremes Index (CEI). Based on the analyses of the historical observations, we find that the U.S. has already experienced a rise in the occurrence of aggregated extremes in recent decades, consistent with the climate response to historical increases in radiative forcing. Additionally, we find that exposure can be expected to intensify under the Representative Concentration Pathway 8.5, with all counties permanently exceeding the baseline variability in the occurrence of extreme hot days, warm nights, and drought conditions by 2050. As a result, every county in the U.S. is projected to permanently exceed the historical CEI variability (as measured by one standard deviation during the 1981–2005 period). Based on the current population distribution, this unprecedented change implies a yearly exposure to extreme conditions for one in every three people. We find that the increasing trend in exposure to the aggregated extremes is already detectable over much of the U.S., and particularly in the central and eastern U.S. The high correspondence between the pattern of trends in our simulations and observations increases confidence in the projected amplification of population exposure to unprecedented combinations of extreme climate conditions, should greenhouse gas concentrations continue to escalate along their current trajectory.

54 ENVIRONMENTAL SCIENCES↗

Superparticle phenomenology from the natural mini-landscape

The methodology of the heterotic mini-landscape attempts to zero in on phenomenologically viable corners of the string landscape where the effective low energy theory is the Minimal Supersymmetric Standard Model with localized grand unification. The gaugino mass pattern is that of mirage-mediation. The magnitudes of various SM Yukawa couplings point to a picture where scalar soft SUSY breaking terms are related to the geography of fields in the compactified dimensions. Higgs fields and third generation scalars extend to the bulk and occur in split multiplets with TeV scale soft masses. First and second generation scalars, localized at orbifold fixed points or tori with enhanced symmetry, occur in complete GUT multiplets and have much larger masses. This picture can be matched onto the parameter space of generalized mirage mediation. Naturalness considerations, the requirement of the observed electroweak symmetry breaking pattern, and LHC bounds on m(gluino) together limit the gravitino mass to the $m_{3/2}~ 5-60$ TeV range. The mirage unification scale is bounded from below with the limit depending on the ratio of squark to gravitino masses. We show that while natural SUSY in this realization may escape detection even at the high luminosity LHC, the high energy LHC with $\sqrt{s}=33$ TeV could unequivocally confirm or exclude this scenario. It should be possible to detect the expected light higgsinos at the ILC if these are kinematically accessible, and possibly also discriminate the expected compression of gaugino masses in the natural mini-landscape picture from the mass pattern expected in models with gaugino mass unification. The thermal WIMP signal should be accessible via direct detection searches at the multi-ton noble liquid detectors such as Xenon-nT or LZ.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Investigation of Multiple Data Streams for Gearbox Bearing Fault Prediction Through Machine-Learning Models

Operations and maintenance (O&M) cost of wind plant accounts up to 30% of total energy cost, which can be reduced through continuous monitoring and successfully detecting incipient wind turbine failures. To accomplish this, condition monitoring and predictive maintenance systems are being implemented in wind industry to support O&M decision making. A wide range of approaches for condition monitoring and fault prediction have been developed. These approaches generally use historical data of wind turbines collected by Supervisory Control and Data Acquisition (SCADA) system to identify patterns that lead to failure. These SCADA data show the overall condition of a wind turbine and can be leveraged to detect when the turbine's performance is degrading and to identify if a fault is developing. However, it becomes challenging to predict the failure of a specific wind turbine gearbox bearing, because the SCADA data are often not directly linked to the component. To bridge the gap, we have investigated features calculated from SCADA data using physics-based models and the gearbox design over the years. The damaged metric we used in the physics domain is frictional energy. Combining these physics domain variables with SCADA data as inputs to various machine learning models for gearbox bearing fault prediction, we have demonstrated the benefits of leveraging both physics and data domain models. It was an attempt to improve frictional-energy-based damage metric by adding data domain inputs, as we had learned that the frictional-energy-based damage metric alone is not sufficient to single out failed bearings from healthy. As condition monitoring data (either vibration or oil debris data) has become available at more and more wind plants, we would like to evaluate whether by adding the condition monitoring data can help further improve the performance of frictional-energy-based damage metric for gearbox bearing fault prediction. Both cases by modeling through various machine learning algorithms are discussed in this study along with some observations.

fault prediction↗

California nearshore processes - ERTS 1

The detectability of many nearshore processes from ERTS is made possible due to the suspended sediment present in the coastal waters. From viewing and analyzing the California coastal imagery collected during the last year and a half, the overall current patterns and their changes have become evident. It is now possible to map monthly and seasonal changes that occur throughout the year. The original objectives of detecting currents, sediment transport, estuaries and river discharge have now been expanded to include the use of ERTS information in operational problems of the U.S. Army Corps of Engineers. This incorporates the detected nearshore features into planning and organizing shore protection facilities.

Steller, D. D.↗

Application of multidimensional structural characterization to detect and describe moderate forest disturbance

The study of vegetation community and structural change has been central to ecology for over a century, yet the ways in which disturbances reshape the physical structure of forest canopies remain relatively unknown. Moderate severity disturbances affect different canopy strata and plant species, resulting in variable structural outcomes and ecological consequences. Terrestrial lidar (light detection and ranging) offers an unprecedented view of the interior arrangement and distribution of canopy elements, permitting the derivation of multidimensional measures of canopy structure that describe several canopy structural traits (CSTs) with known links to ecosystem function. We used lidar-derived CSTs within a machine learning framework to detect and describe the structural changes that result from various disturbance agents, including moderate severity fire, ice storm damage, age-related senescence, hemlock woolly adelgid, beech bark disease, and chronic acidification. We found that fire and ice storms primarily affected the amount and position of vegetation within canopies, while acidification, senescence, pathogen, and insect infestation altered canopy arrangement and complexity. Only two of the six disturbance agents significantly reduced leaf area, counter to common assumptions regarding many moderate severity disturbances. While findings are limited in their generalizability due to lack of replication among disturbances, they do suggest that the current limitations of standard disturbance detection methods—such as optical-based remote sensing platforms, which are often above-canopy perspectives—limit our ability to understand the full ecological and structural impacts of disturbance, and to evaluate the consistency of structural patterns within and among disturbance agents. A more broadly inclusive definition of ecological disturbance that incorporates multiple aspects of canopy structural change may potentially improve the modeling, detection, and prediction of functional implications of moderate severity disturbance as well as broaden our understanding of the ecological impacts of disturbance.

54 ENVIRONMENTAL SCIENCES↗

Detection of internal structure by scattered light intensity: Application to kidney cell sorting

Scattered light measurements in flow cytometry were sucessfully used to distinguish cells on the basis of differing morphology and internal structure. Differences in scattered light patterns due to changes in internal structure would be expected to occur at large scattering angles. Practically, the results of these calculations suggest that in experimental situations an array of detectors would be useful. Although in general the detection of the scattered light intensity at several intervals within the 10 to 60 region would be sufficient, there are many examples where increased sensitivity could be acheived at other angles. The ability to measure at many different angular intervals would allow the experimenter to empirically select the optimum intervals for the varying conditions of cell size, N/C ratio, granule size and internal structure from sample to sample. The feasibility of making scattered light measurements at many different intervals in flow cytometry was demonstrated. The implementation of simplified versions of these techniques in conjunction with independant measurements of cell size could potentially improve the usefulness of flow cytometry in the study of the internal structure of cells.

Goolsby, C. L.↗

DC calibration of the strain sensitivity of a single mode optical fiber interferometer

The strain sensitivity of an optical fiber interferometer developed for the detection of pulsed ultrasonic waves in solids was calibrated. Light from the output ends of both fibers was superimposed to form an interference fringe pattern that was interrogated in the far field to give a signal proportional to the differential optical fiber path length. Strain sensitivity is determined by comparing data obtained by clamping and bending the bar at different lengths to simple cantilever beam theory. A minimum theoretical detectable strain of less than 10 to the minus 10th power is indicated.

Claus, R. O.↗

Evaluation of alkali–silica reaction damage in concrete using linear and nonlinear resonance techniques

Here in this study, the initiation and development of alkali–silica reaction (ASR) in concrete prisms containing reactive coarse (RCA) and reactive fine (RFA) aggregates were monitored over one year using linear and nonlinear resonance techniques. Although the linear resonance test could detect initiation and development of ASR damage in RCA specimens, it failed in the RFA specimens. Petrographic analysis confirmed the presence of early-stage ASR damage and the presence of different microcracking patterns in the RFA and RCA specimens, which may explain differences in the linear resonance data. For both RCA and RFA specimens, the nonlinear resonance test results were able to detect the initiation of ASR damage and showed a strong correlation with the ASR expansion for all specimens from different mix designs. The results demonstrate the high sensitivity of the nonlinear resonance test and its potential for quantitative evaluation of the ASR damage state of concrete specimens without a baseline measurement.

36 MATERIALS SCIENCE↗

A Fiber-Optic Sensor for Leak Detection in a Space Environment

A miniature fiber-optic, laser-based, interferometric leak detector is presented for application as a means to detect on-orbit gas leaks. The sensor employs a fiber-coupled modified Michelson interferometer to detect gas leaks by measuring an increase in gas density in the sensing region. Monitoring changes in the fringe pattern output by the interferometer allows for direct measurement of the gas density in the sensing region and, under the assumption of an equation of state, this can be used to obtain a pressure measurement. Measurements obtained over a pressure range from 20 mtorr to 760 torr using a prototypical interferometer on working gases of air, nitrogen, argon, and helium generally exhibit agreement with a theoretical prediction of the pressure increase required before an interference fringe completely moves over the detector. Additional measurements performed on various gases demonstrate the range of detectable species, measuring sub-torr pressure changes in the process. A high-fidelity measurement places the ultimate pressure resolution for this particular sensor configuration in the 10 mtorr range. Time-resolved data prove the capability of this sensor to detect fast gas flow phenomena associated with transients and pressure waves.

Sinko, John E.↗