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At least 973 records · Page 54

Noise reduction methods for nucleic acid and macromolecule sequencing

Methods, systems, and devices are disclosed for processing macromolecule sequencing data with substantial noise reduction. In one aspect, a method for reducing noise in a sequential measurement of a macromolecule comprising serial subunits includes cross-correlating multiple measured signals of a physical property of subunits of interest of the macromolecule, the multiple measured signals including the time data associated with the measurement of the signal, to remove or at least reduce signal noise that is not in the same frequency and in phase with the systematic signal contribution of the measured signals.

59 BASIC BIOLOGICAL SCIENCES↗

Mass spectrometric gas composition measurements associated with jet interaction tests in a high-enthalpy wind tunnel

Knowledge of test gas composition is important in wind-tunnel experiments measuring aerothermodynamic interactions. This paper describes measurements made by sampling the top of the test section during runs of the Langley 7-Inch High-Temperature Tunnel. The tests were conducted to determine the mixing of gas injected from a flat-plate model into a combustion-heated hypervelocity test stream and to monitor the CO2 produced in the combustion. The Mass Spectrometric (MS) measurements yield the mole fraction of N2 or He and CO2 reaching the sample inlets. The data obtained for several tunnel run conditions are related to the pressures measured in the tunnel test section and at the MS ionizer inlet. The apparent distributions of injected gas species and tunnel gas (CO2) are discussed relative to the sampling techniques. The measurements provided significant real-time data for the distribution of injected gases in the test section. The jet N2 diffused readily from the test stream, but the jet He was mostly entrained. The amounts of CO2 and Ar diffusing upward in the test section for several run conditions indicated the variability of the combustion-gas test-stream composition.

Lewis, B. W.↗

Improving the Accuracy of Lunar Laser Ranging Tests of Gravitational Theory: Modeling and Future Directions

Accurate analysis of precision ranges to the Moon have provided several tests of gravitational theory: the equivalence principle, geodetic precession, PPN parameters beta and gamma, and the constancy of the gravitational constant G. Other possible tests include the inverse square law at 20,000 km length scales and the PPN parameter 1. The uncertainties of these tests have decreased as data accuracies have improved and data time span has lengthened. We are exploring the modeling improvements necessary to proceed from cm to mm range accuracies. Looking to future exploration, what characteristics are desired for the next generation of ranging devices, what fundamental questions can be investigated, and what are the challenges for modeling and data analysis?

Williams, James G.↗

On Hilbert-Huang Transform Based Synthesis of a Signal Contaminated by Radio Frequency Interference or Fringes

Norden E. Huang et al. had proposed and published the Hilbert-Huang Transform (HHT) concept correspondently in 1996, 1998. The HHT is a novel method for adaptive spectral analysis of non-linear and non-stationary signals. The HHT comprises two components: - the Huang Empirical Mode Decomposition (EMD), resulting in an adaptive data-derived basis of Intrinsic Mode functions (IMFs), and the Hilbert Spectral Analysis (HSA1) based on the Hilbert Transform for 1-dimension (1D) applied to the EMD IMF's outcome. Although paper describes the HHT concept in great depth, it does not contain all needed methodology to implement the HHT computer code. In 2004, Semion Kizhner and Karin Blank implemented the reference digital HHT real-time data processing system for 1D (HHT-DPS Version 1.4). The case for 2-Dimension (2D) (HHT2) proved to be difficult due to the computational complexity of EMD for 2D (EMD2) and absence of a suitable Hilbert Transform for 2D spectral analysis (HSA2). The real-time EMD2 and HSA2 comprise the real-time HHT2. Kizhner completed the real-time EMD2 and the HSA2 reference digital implementations respectively in 2013 & 2014. Still, the HHT2 outcome synthesis remains an active research area. This paper presents the initial concepts and preliminary results of HHT2-based synthesis and its application to processing of signals contaminated by Radio-Frequency Interference (RFI), as well as optical systems' fringe detection and mitigation at design stage. The Soil Moisture Active Passive (SMAP mission (SMAP) carries a radiometer instrument that measures Earth soil moisture at L1 frequency (1.4 GHz polarimetric - H, V, 3rd and 4th Stokes parameters). There is abundant RFI at L1 and because soil moisture is a strategic parameter, it is important to be able to recover the RFI-contaminated measurement samples (15% of telemetry). State-of-the-art only allows RFI detection and removes RFI-contaminated measurements. The HHT-based analysis and synthesis facilitates recovery of measurements contaminated by all kinds of RFI, including jamming [7-8]. The fringes are inherent in optical systems and multi-layer complex contour expensive coatings are employed to remove the unwanted fringes. HHT2-based analysis allows test image decomposition to analyze and detect fringes, and HHT2-based synthesis of useful image.

Spacecraft Electronics Equipment↗

Data Assimilation for Robust UQ Within Agent-Based Simulation on HPC Systems

Agent-based simulation provides a powerful tool for in silico system modeling. However, these simulations do not provide built-in methods for uncertainty quantification (UQ). Within these types of models a typical approach to UQ is to run multiple realizations of the model then compute aggregate statistics. This approach is limited due to the compute time required for a solution. When faced with an emerging biothreat, public health decisions need to be made quickly and solutions for integrating near real-time data with analytic tools are needed. We propose an integrated Bayesian UQ framework for agent-based models based on sequential Monte Carlo sampling. Given streaming or static data about the evolution of an emerging pathogen this Bayesian framework provides a distribution over the parameters governing the spread of a disease through a population. These estimates of the spread of a disease may be provided to public health agencies seeking to abate the spread. By coupling agent-based simulations with Bayesian modeling in a data assimilation, our proposed framework provides a powerful tool for modeling dynamical systems in silico. We propose a method which reduces model error and provides a range of realistic possible outcomes. Moreover, our method addresses two primary limitations of ABMs: the lack of UQ and an inability to assimilate data. Our proposed framework combines the flexibility of an agent-based model with UQ provided by the Bayesian paradigm in a workflow which scales well to HPC systems. We provide algorithmic details and results on a simulated outbreak with both static and streaming data.

Spannaus, Adam [ORNL] (ORCID:0000000225213657)↗

An automatic editing algorithm for GPS data

An algorithm has been developed to edit automatically Global Positioning System data such that outlier deletion, cycle slip identification, and correction are independent of clock instability, selective availability, receiver-satellite kinematics, and tropospheric conditions. This algorithm, called TurboEdit, operates on undifferenced, dual frequency carrier phase data, and requires the use of P code pseudorange data and a smoothly varying ionospheric electron content. TurboEdit was tested on the large data set from the CASA Uno experiment, which contained over 2500 cycle slips.Analyst intervention was required on 1 percent of the station-satellite passes, almost all of these problems being due to difficulties in extrapolating variations in the ionospheric delay. The algorithm is presently being adapted for real time data editing in the Rogue receiver for continuous monitoring applications.

Blewitt, Geoffrey↗

In-Situ Measurement of Hall Thruster Erosion Using a Fiber Optic Regression Probe

One potential life-limiting mechanism in a Hall thruster is the erosion of the ceramic material comprising the discharge channel. This is especially true for missions that require long thrusting periods and can be problematic for lifetime qualification, especially when attempting to qualify a thruster by analysis rather than a test lasting the full duration of the mission. In addition to lifetime, several analytical and numerical models include electrode erosion as a mechanism contributing to enhanced transport properties. However, there is still a great deal of dispute over the importance of erosion to transport in Hall thrusters. The capability to perform an in-situ measurement of discharge channel erosion is useful in addressing both the lifetime and transport concerns. An in-situ measurement would allow for real-time data regarding the erosion rates at different operating points, providing a quick method for empirically anchoring any analysis geared towards lifetime qualification. Erosion rate data over a thruster's operating envelope would also be useful in the modeling of the detailed physics inside the discharge chamber. A recent fundamental sensor development effort has led to a novel regression, erosion, and ablation sensor technology (REAST). The REAST sensor allows for measurement of real-time surface erosion rates at a discrete surface location. The sensor was tested using a linear Hall thruster geometry, which served as a means of producing plasma erosion of a ceramic discharge chamber. The mass flow rate, discharge voltage, and applied magnetic field strength could be varied, allowing for erosion measurements over a broad thruster operating envelope. Results are presented demonstrating the ability of the REAST sensor to capture not only the insulator erosion rates but also changes in these rates as a function of the discharge parameters.

Polzink, Kurt A.↗

Using Satellite Imagery to Identify Tornado Damage Tracks and Recovery from the April 27, 2011 Severe Weather Outbreak

Emergency response to natural disasters requires coordination between multiple local, state, and federal agencies. Single, relatively weak tornado events may require comparatively simple response efforts; but larger "outbreak" events with multiple strong, long-track tornadoes can benefit from additional tools to help expedite these efforts. Meteorologists from NOAA's National Weather Service conduct field surveys to map tornado tracks, assess damage, and determine the tornado intensity following each event. Moderate and high resolution satellite imagery can support these surveys by providing a high-level view of the affected areas. Satellite imagery could then be used to target areas for immediate survey or to corroborate the results of the survey after it is completed. In this study, the feasibility of using satellite imagery to identify tornado damage tracks was determined by comparing the characteristics of tracks observed from low-earth orbit to tracks assessed during the official NWS storm survey process. Of the 68 NWS confirmed centerlines, 24 tracks (35.3%) could be distinguished from other surface features using satellite imagery. Within each EF category, 0% of EF-0, 3% of EF-1, 50% of EF-2, 77.7% of EF-3, 87.5% of EF-4 and 100% of EF-5 tornadoes were detected. It was shown that satellite data can be used to identify tornado damage tracks in MODIS and ASTER NDVI imagery, where damage to vegetation creates a sharp drop in values though the minimum EF-category which can be detected is dependent upon the type of sensor used and underlying vegetation. Near-real time data from moderate resolution sensors compare favorably to field surveys after the event and suggest that the data can provide some value in the assessment process.

Cole, Tony A.↗

Using Satellite Imagery to Identify Tornado Damage Tracks and Recovery from the April 27, 2011 Severe Weather Outbreak

Emergency response to natural disasters requires coordination between multiple local, state, and federal agencies. Single, relatively weak tornado events may require comparatively simple response efforts; but larger "outbreak" events with multiple strong, long-track tornadoes can benefit from additional tools to help expedite these efforts. Meteorologists from NOAA's National Weather Service conduct field surveys to map tornado tracks, assess damage, and determine the tornado intensity following each event. Moderate and high resolution satellite imagery can support these surveys by providing a high-level view of the affected areas. Satellite imagery could then be used to target areas for immediate survey or to corroborate the results of the survey after it is completed. In this study, the feasibility of using satellite imagery to identify tornado damage tracks was determined by comparing the characteristics of tracks observed from low-earth orbit to tracks assessed during the official NWS storm survey process. Of the 68 NWS confirmed centerlines, 24 tracks (35.3%) could be distinguished from other surface features using satellite imagery. Within each EF category, 0% of EF-0, 3% of EF-1, 50% of EF-2, 77.7% of EF-3, 87.5% of EF-4 and 100% of EF-5 tornadoes were detected. It was shown that satellite data can be used to identify tornado damage tracks in MODIS and ASTER NDVI imagery, where damage to vegetation creates a sharp drop in values though the minimum EF-category which can be detected is dependent upon the type of sensor used and underlying vegetation. Near-real time data from moderate resolution sensors compare favorably to field surveys after the event and suggest that the data can provide some value in the assessment process.

Molthan, Andrew L.↗

An algorithm for attitude identification for SCOLE using two infrared cameras

This report presents an algorithm that incorporates real-time data from two infrared cameras and computes the attitude parameters of the Spacecraft Control Laboratory Experiment (SCOLE), a laboratory apparatus representing an offset-feed antenna attached to the Space Shuttle by a flexible mast. The algorithm utilizes camera position information of three miniature LEDs, mounted on the SCOLE platform, permitting arbitrary camera placement and an on-line attitude extraction. The continuous nature of the algorithm allows identification of the placement of the two cameras with respect to some initial position of the three reference LEDs, followed by on-line six degrees of freedom attitude tracking, regardless of the attitude time history. The report provides a description of the algorithm in the camera identification mode as well as the mode of target tracking. Experimental data from a reduced-size SCOLE-like laboratory model, reflecting the performance of the camera identification and tracking processes, are presented.

Shenhar, J.↗

Applications of Data Assimilation to Analysis of the Ocean on Large Scales

It is commonplace to begin talks on this topic by noting that oceanographic data are too scarce and sparse to provide complete initial and boundary conditions for large-scale ocean models. Even considering the availability of remotely-sensed data such as radar altimetry from the TOPEX and ERS-1 satellites, a glance at a map of available subsurface data should convince most observers that this is still the case. Data are still too sparse for comprehensive treatment of interannual to interdecadal climate change through the use of models, since the new data sets have not been around for very long. In view of the dearth of data, we must note that the overall picture is changing rapidly. Recently, there have been a number of large scale ocean analysis and prediction efforts, some of which now run on an operational or at least quasi-operational basis, most notably the model based analyses of the tropical oceans. These programs are modeled on numerical weather prediction. Aside from the success of the global tide models, assimilation of data in the tropics, in support of prediction and analysis of seasonal to interannual climate change, is probably the area of large scale ocean modeling and data assimilation in which the most progress has been made. Climate change is a problem which is particularly suited to advanced data assimilation methods. Linear models are useful, and the linear theory can be exploited. For the most part, the data are sufficiently sparse that implementation of advanced methods is worthwhile. As an example of a large scale data assimilation experiment with a recent extensive data set, we present results of a tropical ocean experiment in which the Kalman filter was used to assimilate three years of altimetric data from Geosat into a coarsely resolved linearized long wave shallow water model. Since nonlinear processes dominate the local dynamic signal outside the tropics, subsurface dynamical quantities cannot be reliably inferred from surface height anomalies. Because of its potential for large scale synoptic coverage of the deep ocean, acoustic travel time data should be a natural complement to satellite altimetry. Satellite data give us vertical integrals associated with thermodynamic and dynamic processes.

Miller, Robert N.↗

Hydra: Computer Vision for Data Quality Monitoring

Hydra: Computer Vision for Data Quality Monitoring Mar 13, 2024, 4:15 PM 30m Charles B. Wang Center, Stony Brook University Poster Track 1: Computing Technology for Physics Research Poster session with coffee break Speaker Ayan Roy Description Hydra is an extensible framework for training, managing, and deploying machine learning models for near real-time data quality monitoring. It is designed to take some of the burden off of shift crews by providing ‘round-the-clock’ monitoring of plots representing the data being collected. The Hydra system is backed by a database which is leveraged for near push button training and is primarily controlled and viewed through a set of web interfaces. This web interface contains a simple-to-use web based GUI for labeling of the datasets used in training; making it possible to label thousands of images quickly and efficiently. To aid in the analysis of Hydra inferences gradCAM, a method of interpretability, is performed and overlaid on the target image, highlighting regions of interest, making diagnosis of problems much faster. Development began in 2019 for the GlueX Experiment in Hall-D, the Hydra system has grown to encompass all of the experimental halls at Jefferson Laboratory. This talk will focus on the features of Hydra as well as provide details of the challenges present with deploying to disparate experimental halls. With a roadmap of development established, Hydra aims to continue to grow in richness of feature set and expand to encompass other monitoring tasks in differing communities.

Roy, Ayan↗

Camp Blanding Lightning Mapping Array

A seven station, short base-line Lightning Mapping Array was installed at the Camp Blanding International Center for Lightning Research and Testing (ICLRT) during April 2011. This network will support science investigations of Terrestrial Gamma-Ray Flashes (TGFs) and lightning initiation using rocket triggered lightning at the ICLRT. The network operations and data processing will be carried out through a close collaboration between several organizations, including the NASA Marshall Space Flight Center, University of Alabama in Huntsville, University of Florida, and New Mexico Tech. The deployment was sponsored by the Defense Advanced Research Projects Agency (DARPA). The network does not have real-time data dissemination. Description, status and plans will be discussed.

Blakeslee,Richard↗

Development of a Multi-Sensor Data Science System Used for Signature Development on Solvent Extraction Processes in support of safeguards- an overview

A new nuclear fuel cycle test bed is being built at Idaho National Laboratory to support the purification of special nuclear material recovered from used fuel. The test bed provides an opportunity to research process flow and the application of computational tools in solvent extraction processes. A deeper understanding of process and equipment behavior coupled with real time data collection can indicate whether a process failure is accidental or purposeful. The goal of this project is to develop a system that utilizes non-traditional measurement sources such as vibration, acoustics, current, light, flow, and temperature in conjunction with data-based, machine learning techniques that will allow for signal discovery. This multi-sensor data can support the development of safeguards by design and security by design measures for such a facility. Additionally, it can aid in early detection and identification of removed materials indicating diversion, which is essential for initiating material recovery and actor identification. This overview encompasses the current research and testing of sensors to develop a spectrum of process signatures. To be followed by planned experiments aimed to characterize said signatures and study potential feature extraction techniques to identify a fault in the system (i.e. flow diversion).

98 NUCLEAR DISARMAMENT, SAFEGUARDS, AND PHYSICAL P↗

Discovery and Evolution of the New Black Hole Candidate Swift J1539.2-6227 During Its 2008 Outburst

We report on the discovery by the Swift Gamma-Ray Burst Explorer of the black hole candidate Swift J1539.2-6227 and the subsequent course of an outburst beginning in November 2008 and lasting at least seven months. The source was discovered during normal observations with the Swift Burst Alert Telescope (BAT) on 2008 November 25. An extended observing campaign with the Rossi X-Ray Timing Explorer (RXTE) and Swift provided near-daily coverage over 176 days, giving us a rare opportunity to track the evolution of spectral and timing parameters with fine temporal resolution through a series of spectral states. The source was first detected in a hard state during which strong low-frequency quasiperiodic oscillations (QPOs) were detected. The QPOs persisted for about 35 days and a signature of the transition from the hard to soft intermediate states was seen in the timing data. The source entered a short-lived thermal state about 40 days after the start of the outburst. There were variations in spectral hardness as the source flux declined and returned to a hard state at the end of the outburst. The progression of spectral states and the nature of the timing features provide strong evidence that Swift J1539.2-6227 is a candidate black hole in a low-mass X-ray binary system.

Krimm, H. A.↗

A Reconstruction of Global Hydroclimate and Dynamical Variables Over the Common Era

Hydroclimate extremes critically affect human and natural systems, but there remain many unanswered questions about their causes and how to interpret their dynamics in the past and in climate change projections. These uncertainties are due, in part, to the lack of long-term, spatially resolved hydroclimate reconstructions and information on the underlying physical drivers for many regions. Here we present the first global reconstructions of hydroclimate and associated climate dynamical variables over the past two thousand years. We use a data assimilation approach tailored to reconstruct hydroclimate that optimally combines 2,978 paleoclimate proxy-data time series with the physical constraints of an atmosphere?ocean climate model. The global reconstructions are annually or seasonally resolved and include two spatiotemporal drought indices, near-surface air temperature, an index of North Atlantic variability, the location of the intertropical convergence zone, and monthly Nino indices. This database, called the Paleo Hydrodynamics Data Assimilation product (PHYDA), will provide a critical new platform for investigating the causes of past climate variability and extremes, while informing interpretations of future hydroclimate projections.

Natural hazards↗

A0535+26 - Refined position measurement and new pulse period data

The hard, pulsing, transient X-ray source A0535+26 has been observed with SAS 3 on three occasions during 1977-1978. These observations have yielded a precise position measurement (20 arcsec error radius), which renders the identification of A0535+26 with the Be star HDE 245770 virtually certain. The pulse phase was tracked for about 9 days in April 1978 and clearly showed both first and second derivatives in the pulse period. An analysis of these timing data, combined with data from previous observations, leads to the following conclusions: (1) a significant fraction of the observed changes in pulse period is probably intrinsic to the compact X-ray star (e.g., accretion torques on a neutron star), and (2) conservative limits on binary orbital parameters tend to further confirm a long orbital period (at least about 20 days).

Li, F.↗

Bayesian Analysis of the Cosmic Microwave Background

There is a wealth of cosmological information encoded in the spatial power spectrum of temperature anisotropies of the cosmic microwave background! Experiments designed to map the microwave sky are returning a flood of data (time streams of instrument response as a beam is swept over the sky) at several different frequencies (from 30 to 900 GHz), all with different resolutions and noise properties. The resulting analysis challenge is to estimate, and quantify our uncertainty in, the spatial power spectrum of the cosmic microwave background given the complexities of "missing data", foreground emission, and complicated instrumental noise. Bayesian formulation of this problem allows consistent treatment of many complexities including complicated instrumental noise and foregrounds, and can be numerically implemented with Gibbs sampling. Gibbs sampling has now been validated as an efficient, statistically exact, and practically useful method for low-resolution (as demonstrated on WMAP 1 and 3 year temperature and polarization data). Continuing development for Planck - the goal is to exploit the unique capabilities of Gibbs sampling to directly propagate uncertainties in both foreground and instrument models to total uncertainty in cosmological parameters.

methods - statistical↗