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DOE OSTI2013

Improved Protein Arrays for Quantitative Systems Analysis of the Dynamics of Signaling Pathway Interactions

Astronauts and workers in nuclear plants who repeatedly exposed to low doses of ionizing radiation (IR, <10 cGy) are likely to incur specific changes in signal transduction and gene expression in various tissues of their body. Remarkable advances in high throughput genomics and proteomics technologies enable researchers to broaden their focus from examining single gene/protein kinetics to better understanding global gene/protein expression profiling and biological pathway analyses, namely Systems Biology. An ultimate goal of systems biology is to develop dynamic mathematical models of interacting biological systems capable of simulating living systems in a computer. This Glue Grant is to complement Dr. Boothman’s existing DOE grant (No. DE-FG02-06ER64186) entitled “The IGF1/IGF-1R-MAPK-Secretory Clusterin (sCLU) Pathway: Mediator of a Low Dose IR-Inducible Bystander Effect” to develop sensitive and quantitative proteomic technology that suitable for low dose radiobiology researches. An improved version of quantitative protein array platform utilizing linear Quantum dot signaling for systematically measuring protein levels and phosphorylation states for systems biology modeling is presented. The signals are amplified by a confocal laser Quantum dot scanner resulting in ~1000-fold more sensitivity than traditional Western blots and show the good linearity that is impossible for the signals of HRP-amplification. Therefore this improved protein array technology is suitable to detect weak responses of low dose radiation. Software is developed to facilitate the quantitative readout of signaling network activities. Kinetics of EGFRvIII mutant signaling was analyzed to quantify cross-talks between EGFR and other signaling pathways.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

DOE OSTI2024

Power System Operational Impacts of Electric Vehicle Dynamic Wireless Charging

The electrification of the transportation sector poses an opportunity for reducing greenhouse gas (GHG) emissions from passenger vehicles. Electric vehicle (EV) charging through dynamic wireless power transfer (DWPT), known as roadway electrification, could shift EV demand profiles to better coincide with renewable electricity generation. However, this would be a very large new load and few studies evaluate the regional impacts of DWPT charging in a power transmission system. This paper defines methods that address dataset generation for passenger vehicle trips and models to evaluate regional impacts for this emerging technology. Household vehicle miles traveled (VMT) data form localized EV demand profiles through discrete-event simulation. This data serves as exogenous inputs for a Production Cost Model (PCM) of a synthetic transmission system based on the Electric Reliability Council of Texas's (ERCOT) network. EV charging methods are compared for both a 2018 baseline generation mixture and a high-renewable generation case incorporating 20 GW of installed solar photovoltaic (PV) capacity. The PCM employs unit commitment and economic dispatch (UC&ED) models to compare financial, environmental, and grid reliability impacts from EV charging across passenger EV adoption levels. In-transit charging could reduce grid operational costs by as much as 1.49%, with up to $13.7B saved in annual vehicle operational costs for consumers compared to gas-powered vehicles. Health impacts analysis from power plant and vehicle tailpipe emissions from this study show net health benefits increase by 40% for in-transit charging coupled with high renewable generation. Renewable resources provide an avenue for cost-effective in-transit charging with reduced emissions. The combination of dataset generation and open-source power system modeling establish a foundation for the holistic evaluation of regional DWPT impacts.

dynamic wireless power transfer↗

NASA NTRS1989

The outflow speed of the coma of Halley's comet

Data concerning the outflow speed of the coma of Comet Halley are studied in relation to a generalization of the coupled pure-gas-dynamic/Monte Carlo model of Combi and Smyth (1988) to include the dusty-gas dynamics of the inner coma. Measurements made by the Giotto neutral-gas spectrometer, IR water observations from the Kuiper Airborne Observatory, and Doppler radio line profiles of HCN and OH are used to examine the radial dependence of the outflow speed, the asymmetry in the outflow speed, and the overall heliocentric distance dependence of the Doppler profiles, respectively. The results suggest that the model makes it possible to understand the gross long-term behavior and radial structure of the dynamics of the cometary coma.

Combi, Michael R.↗

DOE OSTI2015

PLASMA INSTABILITIES IN THE CONTEXT OF CURRENT HELIUM SEDIMENTATION MODELS: DYNAMICAL IMPLICATIONS FOR THE ICM IN GALAXY CLUSTERS

Understanding whether Helium can sediment to the core of galaxy clusters is important for a number of problems in cosmology and astrophysics. All current models addressing this question are one-dimensional and do not account for the fact that magnetic fields can effectively channel ions and electrons, leading to anisotropic transport of momentum, heat, and particle diffusion in the weakly collisional intracluster medium (ICM). This anisotropy can lead to a wide variety of instabilities, which could be relevant for understanding the dynamics of heterogeneous media. In this paper, we consider the radial temperature and composition profiles as obtained from a state-of-the-art Helium sedimentation model and analyze its stability properties. We find that the associated radial profiles are unstable to different kinds of instabilities depending on the magnetic field orientation at all radii. The fastest growing modes are usually related to generalizations of the magnetothermal instability (MTI) and the heat-flux-driven buoyancy instability which operate in heterogeneous media. We find that the effect of sedimentation is to increase (decrease) the predicted growth rates in the inner (outer) cluster region. The unstable modes grow quickly compared to the sedimentation timescale. This suggests that the composition gradients as inferred from sedimentation models, which do not fully account for the anisotropic character of the weakly collisional environment, might not be very robust. Our results emphasize the subtleties involved in understanding the gas dynamics of the ICM and argue for the need of a comprehensive approach to address the issue of Helium sedimentation beyond current models.

79 ASTRONOMY AND ASTROPHYSICS↗

NASA NTRS1989

Simulation of collisional transport processes and the stability of planetary rings

The utility of the phase-space fluid method for the study of planetary ring dynamics is presently demonstrated through the numerical solution of a model kinetic equation for a flattened Keplerian disk. Attention is given to ringlets composed of single-sized particles, as well as to ringlets composed of two different-sized particles; in the latter case, the ringlets evolve in such a way that the lighter particles are confined by the heavier ones. The results obtained indicate that some natural process may sharpen the optical depth profile of edges even without an external forcing mechanism, and that intermediate optical depths are dynamically preferred in some cases.

Brophy, Thomas G.↗

DOE OSTI2015

Resolution and Dynamical Core Dependence of Atmospheric River Frequency in Global Model Simulations

This study examines the sensitivity of atmospheric river (AR) frequency simulated by a global model with different grid resolutions and dynamical cores. Analysis is performed on aquaplanet simulations using version 4 of Community Atmosphere Model (CAM4) at 240, 120, 60 and 30 km model resolutions each with the Model for Prediction Across Scales (MPAS) and High-Order Methods Modeling Environment (HOMME) dynamical cores. The frequency of AR events decreases with model resolution and the HOMME dynamical core produces more AR events than MPAS. Comparing the frequencies determined using absolute and percentile thresholds of large-scale conditions used to define an AR, model sensitivity is found to be related to the overall sensitivity of sub-tropical westerlies, atmospheric precipitable water content and profile and to a lesser extent on extra-tropical Rossby wave activity to model resolution and dynamical core. Real world simulations using MPAS at 120 km and 30 km grid resolutions also exhibit a decrease of AR frequency with increasing resolution over southern East Pacific, but there difference is smaller over northern East Pacific. This inter-hemispheric difference is related to the enhancement of convection in over the tropics with increased resolution. This anomalous convection sets off Rossby wave patterns that weaken the subtropical westerlies over southern East Pacific but have relatively little effect on those over northern East Pacific. In comparison to NCEP2 reanalysis, MPAS real world simulations are found to underestimate AR frequencies at both resolutions likely because of their climatologically drier sub-tropics and poleward shifted jets. This study highlights the important links between model climatology of large-scale conditions and extremes.

atmopheric river frequency↗

NASA NTRS1992

The spectroscopy of the atmosphere using far-infrared emission experiment (SAFIRE)

The goal of the SAFIRE experiment is to improve understanding of the middle-atmospher ozone distribution by conducting and analyzing global-scale measurements of important chemical, radiative and dynamical processes, including coupling among these processes and atmospheric regions. This will be accomplished by observing vertical profiles of temperature and key gases in the main chemical families. A detailed listing of SAFIRE measurements, including sepctral ranges, altitude ranges, IFOV, spatial and temporal resolution, latitude coverage and estimated precision is provided. The temperature, O3, CH4, and H2O observations will be useful for deriving and studying dynamical quantities such as geopotential height, potential vorticity, balanced winds and Eliassen-Palm fluxes. The SAFIRE observations will provide important data for study of chemistry, dynamics and transport processes. This experiment was conceived in response to a need for simultaneous measurements of odd hydrogen gases. These include gases such as OH, HO2, and atomic oxygen, which have not been observed by past satellite experiments and which will not be measured by any of teh Upper Atmosophere Reserach Satellite (UARS) experiments to be launched in 1991.

Russell, J. M., III↗

DOE OSTI2023

Insights into the relation between vertical cloud structure and dynamics of three polar lows: Observations from COMBLE

The vertical structure of three polar lows is described using profiling radar, lidar, and passive remote sensors deployed at a coastal site in northern Norway. The data were collected as part of the Cold-air Outbreaks in the Marine Boundary Layer Experiment (COMBLE). These data are examined in the context of satellite imagery, operational weather radar reflectivity imagery, and output from the AROME-Arctic model. A comparison to satellite images shows that AROME-Arctic captured the polar lows well. All three polar lows form in marine cold-air outbreaks and are surrounded by open-cellular convection typical of such outbreaks. Two of the lows form in a forward shear environment, and one under reverse shear. Initially, the three polar lows are comma-shaped; two of them transition to be more spirali-form at their mature stage and have mostly cloud-free warm cores. The warm cores are the result of a warm-seclusion process. All three lows have stratiform precipitation bands, marked by little cloud liquid water, and rather high surface precipitation rate. The vertical drafts and turbulence in these stratiform clouds are generally weak. In conclusion, all three lows also have convective clouds, which have stronger vertical drafts, stronger turbulence, and pockets of high liquid water content.

54 ENVIRONMENTAL SCIENCES↗

NASA NTRS1989

Computer modeling of the dynamics of surface tension on rotating fluids in low and microgravity environments

Time-dependent evolutions of the profile of the free surface (bubble shapes) for a cylindrical container partially filled with a Newtonian fluid of constant density, rotating about its axis of symmetry, have been studied. Numerical computations have been carried out with the following situations: (1) linear functions of spin-up and spin-down in low- and microgravity environments, (2) linear functions of increasing and decreasing gravity environments at high- and low-rotating cylinder speeds, and (3) step functions of spin-up and spin-down in a low-gravity environment.

Hung, R. J.↗

NASA NTRS1993

Dynamics of the young binary LMC cluster NGC 1850

BV CCD images and echelle spectra of 52 supergiants are used to examine the age and internal dynamics of the young binary LMC cluster NGC 1850. A color-magnitude diagram was constructed and found to contain three distinct populations of stars. Using star-subtracted, median filtered BV images, attempts were made to determine ellipticity parameters, BV luminosity profiles were constructed to project radii greater than 40. A power law model was applied to test for the presence of a tidal cutoff in the luminosity profile. Of the 52 stars with echelle spectra, a subset of 36 were used to study the cluster dynamics. A rotational signal in the radial velocities has been detected at the 93-percent confidence level, implying a rotation axis at a position angle of 100 +/- 40 deg. Values for the slope of the mass function were determined using mass luminosity relationships and different forms for the IMF. The current cluster age is similar to its central relaxation time.

Fischer, Philippe↗

NASA NTRS2014

How Well Does the Latest Anthropomorphic Test Device Mimic Human Impact Responses?

One of the goals of the NASA Occupant Protection Group is to understand the human tolerance to dynamic loading. This knowledge has to come through indirect approaches such as existing human response databases, anthropometric test devices (ATD), animal testing, post‐mortem human subjects, and models. This study investigated the biofidelity of the National Highway Traffic Safety Administration's ATD named the THOR (test device for human occupant restraint). If THOR responds comparably to humans, then it could potentially be used as a human surrogate to help validate space vehicle requirements for occupant protection. The THOR responses to frontal and spinal impacts (ranging from 8 to 12 G with rise times of 40, 70, and 100 ms) were measured and compared to human volunteer responses (95 trials in frontal and 58 in spinal) previously collected by the U. S. Air Force on the same horizontal impact accelerator. The impact acceleration profiles tested are within the expected range of multi‐purpose crew vehicle (MPCV) landing dynamics. A correlation score was calculated for each THOR to human comparison using CORA (CORrelation and Analysis) software. A two‐parameter beta distribution model fit was obtained for each dependent variable using maximum likelihood estimation. For frontal impacts, the THOR head x‐acceleration peak response correlated with the human response at 8 and 10‐G 100 ms but not 10‐G 70 ms. The phase lagged the human response. Head z‐acceleration was not correlated. Chest x‐acceleration was in phase, had a higher peak response, and was well correlated with lighter subjects (Cora = 0.8 for 46 kg vs. Cora = 0.4 for 126 kg). Head x‐displacement had a leading phase. Several subjects responded with the same peak displacement but the mean of the group was lower. The shoulder x‐displacement was in phase but had higher peaks than the human response. For spinal impacts, the THOR head x‐acceleration was not well correlated. Head and chest z‐acceleration was in phase but had a higher peak response. Chest z‐acceleration was highly correlated with heavier subjects at lower G pulses (Cora = 0.86 for 125 kg at 8 G). The human response was variable in shoulder z‐displacement but the THOR was in phase and was comparable to the mean peak response. Head xand z‐displacement was in phase but had higher peaks. Seat pan forces were well correlated, were in phase, but had a larger peak response than most subjects. The THOR does not respond to frontal and spinal impacts exactly the same way that a human does. Some responses are well matched and others are not. Understanding the strengths and weaknesses of this ATD is an important first step in determining its usefulness in occupant protection at NASA

Newby, N.↗

NASA NTRS2014

How Well Does the Latest Anthropomorphic Test Device Mimic Human Impact Responses?

One of the goals of the NASA Occupant Protection Group is to understand the human tolerance to dynamic loading. This knowledge has to come through indirect approaches such as existing human response databases, anthropometric test devices (ATD), animal testing, post-‐mortem human subjects, and models. This study investigated the biofidelity of the National Highway Traffic Safety Administration's ATD named the THOR (test device for human occupant restraint). If THOR responds comparably to humans, then it could potentially be used as a human surrogate to help validate space vehicle requirements for occupant protection. The THOR responses to frontal and spinal impacts (ranging from 8 to 12 G with rise times of 40, 70, and 100 ms) were measured and compared to human volunteer responses (95 trials in frontal and 58 in spinal) previously collected by the U. S. Air Force on the same horizontal impact accelerator. The impact acceleration profiles tested are within the expected range of multi-‐purpose crew vehicle (MPCV) landing dynamics. A correlation score was calculated for each THOR to human comparison using CORA (CORrelation and Analysis) software. A two-‐parameter beta distribution model fit was obtained for each dependent variable using maximum likelihood estimation. For frontal impacts, the THOR head x-‐acceleration peak response correlated with the human response at 8 and 10-‐G 100 ms but not 10-‐G 70 ms. The phase lagged the human response. Head z-‐acceleration was not correlated. Chest x-‐acceleration was in phase, had a higher peak response, and was well correlated with lighter subjects (Cora = 0.8 for 46 kg vs. Cora = 0.4 for 126 kg). Head x-‐displacement had a leading phase. Several subjects responded with the same peak displacement but the mean of the group was lower. The shoulder x-‐displacement was in phase but had higher peaks than the human response. For spinal impacts, the THOR head x-‐acceleration was not well correlated. Head and chest z-‐acceleration was in phase but had a higher peak response. Chest z-‐acceleration was highly correlated with heavier subjects at lower G pulses (Cora = 0.86 for 125 kg at 8 G). The human response was variable in shoulder z-‐displacement but the THOR was in phase and was comparable to the mean peak response. Head x-‐ and z-‐displacement was in phase but had higher peaks. Seat pan forces were well correlated, were in phase, but had a larger peak response than most subjects. The THOR does not respond to frontal and spinal impacts exactly the same way that a human does. Some responses are well matched and others are not. Understanding the strengths and weaknesses of this ATD is an important first step in determining its usefulness in occupant protection at NASA

Newby, Nate↗

DOE OSTI2020

Coupled transmission and distribution simulations to assess distributed generation response to power system faults

Not Available

Kenyon, Rick Wallace (ORCID:0000000344599708)↗

DOE OSTI2014

Inertia driven radial breathing and nonlinear relaxation in cylindrically confined pure electron plasma

The dynamics of cylindrically trapped electron plasma has been investigated using a newly developed 2D Electrostatic PIC code that uses unapproximated, mass-included equations of motion for simulation. Exhaustive simulations, covering the entire range of Brillouin ratio, were performed for uniformly filled circular profiles in rigid rotor equilibrium. The same profiles were then loaded away from equilibrium with an initial value of rigid rotation frequency different from that required for radial force balance. Both these sets of simulations were performed for an initial zero-temperature or cold load of the plasma with no spread in either angular velocity or radial velocity. The evolution of the off-equilibrium initial conditions to a steady state involve radial breathing of the profile that scales in amplitude and algebraic growth with Brillouin fraction. For higher Brillouin fractions, the growth of the breathing mode is followed by complex dynamics of spontaneous hollow density structures, excitation of poloidal modes, leading to a monotonically falling density profile.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2015

Inertia driven radial breathing and nonlinear relaxation in cylindrically confined pure electron plasma

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

DOE OSTI2024

A gyrokinetic simulation model for 2D equilibrium potential in the scrape-off layer of a field-reversed configuration

The equilibrium potential structure in the scrape-off layer (SOL) of the field-reversed configuration (FRC) can be affected by the penetration of edge biasing applied at the divertor ends. The primary focus of the paper is to establish a formulation that accurately captures both parallel and radial variations of the two-dimensional (2D) potential in SOL. The formulation mainly describes a quasi-neutral plasma with a logical sheath boundary. A full-f gyrokinetic ion model and a massless electron model are implemented in the GTC-X code to solve for the self-consistent equilibrium potential, given fixed radial potential profiles at the boundaries. The first essential point of this 2D model lies in its ability to couple radial and parallel dynamics stemming from resistive currents and drag force on ions. The model successfully recovers the fluid force balance and continuity equations. These collisional effects on 2D potential mainly appear through the density profile changes, modifying the potential through electron pressure gradient. This means an accurate prescription of electron density and temperature profiles is important in predicting the potential structure in the FRC SOL. The Debye sheath potential and the potential profiles applied at the boundaries can be additional factors contributing to the 2D variations in SOL. This comprehensive full-f scheme holds promise for future investigations into turbulent transport in the presence of the self-consistent 2D potential together with the non-Maxwellian distributions and open boundary conditions in the FRC SOL.

Physics↗

NASA NTRS1994

Ozone height profiles using laser heterodyne radiometer

The monitoring of vertical profiles of ozone and related minor constituents in the atmosphere are of great significance to understanding the complex interaction between atmospheric dynamics, chemistry and radiation budget. An ultra high spectral resolution tunable CO2 laser heterodyne radiometer has been designed, developed and set up at the National Physical Laboratory, New Delhi to obtain vertical profiles of various minor constituents the characteristic absorption lines in 9 to 11 micron spectral range. Due to its high spectral resolution the lines can be resolved completely and data obtained are inverted to get vertical profiles using an inversion technique developed by the author. In the present communication the salient features of the laser heterodyne system and the results obtained are discussed in detail.

Jain, S. L.↗

DOE OSTI2025

Subject-specific modeling framework for particle deposition using computational fluid dynamics

Quantifying particle deposition and dose in the respiratory tract requires a physiologically realistic representation and reproducible computational workflows. However, existing modeling frameworks, such as the International Commission on Radiological Protection (ICRP) compartmental models and the Multiple Path Particle Dosimetry (MPPD) tool, lack detailed deposition profiles and subject-specific capabilities. The combination of advances in computer vision algorithms applied to the respiratory tract and Computational Fluid and Particle Dynamics (CFPD) allows high-fidelity simulations of particle behavior in anatomically accurate geometries derived from individual CT scans. The segmentation, preprocessing, and file preparation task for a CFPD simulation was often time-consuming, and no prior studies to-date have yet presented a fully automated framework. This work presents a fully automated workflow to obtain individualized particle deposition profiles in the human respiratory tract. The pipeline starts with segmenting upper and lower airway geometries using morphological and deep learning-based methods, generating three-dimensional (3D) models from CT imaging data. Next, a series of algorithms are presented to quality check and prepare the 3D geometry for a CFD or CFPD simulation. The preprocessing step includes correcting geometric artifacts, enforcing a physically consistent mesh, and automatically identifying and capping multiple outlets, which is required for CFD/CFPD simulations. These processed models are then input into open-source (OpenFOAM) or commercial (StarCCM+) CFD solvers, where flow and transient particle transport equations — including turbulence and particle–wall interactions are solved under realistic breathing conditions. Finally, the resulting particle deposition profiles can be integrated with Monte Carlo radiation transport codes and state-of-the-art computational phantoms to assess organ-specific absorbed doses in scenarios of radioactive aerosol inhalation. The presented work streamlines respiratory tract segmentation, preprocessing for CFD/CFPD simulations, and integration with dose assessment workflows, reducing manual intervention and improving access to high-fidelity, subject-specific modeling. The high precision in predicted particle deposition and dose distributions can improve personalized treatment strategies in respiratory medicine and refine dose estimates for radiation protection.

AI↗