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At least 991 records · Page 55

Evolution of standardization and dissemination of cryo-EM structures and data jointly by the community, PDB, and EMDB

Cryogenic electron microscopy (cryo-EM) methods began to be used in the mid-1970s to study thin and periodic arrays of proteins. Following a half-century of development in cryo-specimen preparation, instrumentation, data collection, data processing and modeling software, cryo-EM has become a routine method for solving structures from large biological assemblies to small biomolecules at near to true atomic resolution. This review explores the critical roles played by the Protein Data Bank (PDB) and Electron Microscopy Data Bank (EMDB) in partnership with the community to develop the necessary infrastructure to archive cryo-EM maps and associated models. Public access to cryo-EM structure data has in turn facilitated better understanding of structure-function relationships and advancement of image processing and modeling tool development. The partnership between the global cryo-EM community and PDB and EMDB leadership has synergistically shaped the standards for metadata, one-stop deposition of maps and models, and validation metrics to assess the quality of cryo-EM structures. The advent of cryo-electron tomography (cryo-ET) for in situ molecular cell structures at a broad resolution range and their correlations with other imaging data introduces new data archival challenges in terms of data size and complexity in the years to come.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

CO and [C ii] line emission of molecular clouds: the impact of stellar feedback and non-equilibrium chemistry

We analyse synthetic 12 CO, 13 CO, and [C ii] emission maps of molecular cloud (MC) simulations from the SILCC-Zoom project. We present radiation, magnetohydrodynamic zoom-in simulations of individual clouds, both with and without radiative stellar feedback, forming in a turbulent multiphase interstellar medium following on-the-fly the evolution of e.g. H 2 , CO, and C + . We introduce a novel post-processing routine based on cloudy which accounts for higher ionization states of carbon due to stellar radiation in H ii regions. Synthetic emission maps of [C ii] in and around feedback bubbles show that the bubbles are largely devoid of [C ii], as recently found in observations, which we attribute to the further ionization of C+ into C 2+ . For both 12 CO and 13 CO, the cloud-averaged luminosity ratio, $L_\rm {CO}/L_\rm {[C\, \small {II}]}$, can neither be used as a reliable measure of the H 2 mass fraction nor of the evolutionary stage of the clouds. We note a relation between the $I_\rm {CO}/I_\rm {[C\, \small {II}]}$ intensity ratio and the H 2 mass fraction for individual pixels of our synthetic maps. The scatter, however, is too large to reliably infer the H 2 mass fraction. Finally, the assumption of chemical equilibrium overestimates H2 and CO masses by up to 150 and 50 per cent, respectively, and $L_\rm {CO}$ by up to 60 per cent. The masses of H and C + would be underestimated by 65 and 30 per cent, respectively, and $L_\rm {[C\, \small {II}]}$ by up to 35 per cent. Hence, the assumption of chemical equilibrium in MC simulations introduces intrinsic errors of a factor of 2 in chemical abundances, luminosities, and luminosity ratios.

79 ASTRONOMY AND ASTROPHYSICS↗

Mapping the soil microbiome functions shaping wetland methane emissions

Accounting for only 8% of Earth’s land cover, freshwater wetlands remain the foremost contributors to global methane emissions. Yet the microorganisms and processes underlying methane emissions from wetland soils remain poorly understood. Over a five-year period, we surveyed the microbial membership and in situ methane measurements from over 700 samples in one of the most prolific methane-emitting wetlands in the United States. We constructed a catalog of 2,502 metagenome-assembled genomes (MAGs), with more than half of the 70 bacterial and archaeal phyla sampled containing novel lineages. Integration of these data with 133 soil metatranscriptomes provided a genome-resolved view of the biogeochemical specialization and versatility expressed over wetland soil spatial and temporal gradients. Centimeter-scale depth differences best explained patterns of microbial community structure and transcribed functionalities, even more than land cover or temporal information. Moreover, while extended flooding restructured soil redox, this perturbation failed to reconfigure the transcriptional profiles of methane-cycling microorganisms, contrasting with theoretically expected responses to hydrological perturbations. Co-expression analyses, coupled with depth-resolved methane measurements, revealed the metabolisms and trophic structures most predictive of methane hotspots. Mapping the spatiotemporal transcriptional patterns on this compendium of biogeochemically classified soil-derived genomes begins to untangle the microbial carbon, energy, and nutrient processing contributing to wetland methane production.

MAG↗

Effect of heat treatment on microstructural evolution and hardness homogeneity in laser powder bed fusion of alloy 718

The thermal history developed in laser powder bed fusion (LPBF) processes has been shown to be complex resulting in equally complex microstructures and mechanical properties. Microscopic observations and Vickers micro-hardness mapping measurements were carried out on diff ;erent section planes of LPBF alloy 718 cuboids. Three-dimensional finite element analysis was used to simulate thermal history and to predict the residual stress distribution in the as-built material. Computational thermodynamics was used to predict the micro-segregation and nucleation driving force of various phases in the bulk and in segregated regions. Varied heat-treatments such as simulated hot isostatic pressing, and double aging were applied. Their influence on the microstructure, microsegregation, precipitate formation, and micro-hardness variations of LPBF alloy 718 were investigated. Hardness map results showed heterogeneous micro-hardness on the xy- and xz-planes of the as-built parts where the bottom plane and center regions had larger hardness of ~315 HV 0.5 while the top plane and contours showed hardness of ~300 HV 0.5 . It was found that the aging treatment increased the overall hardness of the as-built condition from ~310 HV 0.5 to 470 HV 0.5 but also increased the hardness gradient throughout the coupon. After simulated hot isostatic pressing process (i.e., without applied pressure) at 1020 °C for 4 h followed by water quench (HIPWQ), the hardness gradient and hardness was minimized (~210 HV 0.5 ) as the microstructure transitioned from heterogeneous columnar grains in the as-built condition to more uniform recrystallized grains. A double aging treatment was applied to enhance hardness from ~210 HV 0.5 to ~440 HV 0.5 . Finally, HIPWQ followed by double aging produced a homogeneous microstructure and more uniform hardness map with enhanced mechanical properties in LPBF alloy 718 coupons.

36 MATERIALS SCIENCE↗

Systematic Comparison of High-throughput Single-Cell and Single-Nucleus Transcriptomes during Cardiomyocyte Differentiation

A comprehensive reference map of all cell types in the human body is necessary for improving our understanding of fundamental biological processes and in diagnosing and treating disease. High-throughput single-cell RNA sequencing techniques have emerged as powerful tools to identify and characterize cell types in complex and heterogeneous tissues. However, extracting intact cells from tissues and organs is often technically challenging or impossible, for example in heart or brain tissue. Single-nucleus RNA sequencing provides an alternative way to obtain transcriptome profiles of such tissues. To systematically assess the differences between high-throughput single-cell and single-nuclei RNA-seq approaches, we compared Drop-seq and DroNc-seq, two microfluidic-based 3' RNA capture technologies that profile total cellular and nuclear RNA, respectively, during a time course experiment of human induced pluripotent stem cells (iPSCs) differentiating into cardiomyocytes. Clustering of timeseries transcriptomes from Drop-seq and DroNc-seq revealed six distinct cell types, five of which were found in both techniques. Furthermore, single-cell trajectories reconstructed from both techniques reproduced expected differentiation dynamics. We then applied DroNc-seq to postmortem heart tissue to test its performance on heterogeneous human tissue samples. Our data confirm that DroNcseq yields similar results to Drop-seq on matched samples and can be successfully used to generate reference maps for the human cell atlas.

59 BASIC BIOLOGICAL SCIENCES↗

Exciton-Phonon Interaction and Relaxation Times from First Principles

Electron-phonon interactions are key to understanding the dynamics of electrons in materials and can be modeled accurately from first principles. However, when electrons and holes form Coulomb-bound states (excitons), quantifying their interactions and scattering processes with phonons remains an open challenge. Here we show a rigorous approach for computing exciton-phonon (ex-ph) interactions and the associated exciton dynamical processes from first principles. Starting from the ab initio Bethe-Salpeter equation, we derive expressions for the ex-ph matrix elements and relaxation times. Finally, we apply our method to bulk hexagonal boron nitride, for which we map the ex-ph relaxation times as a function of exciton momentum and energy, analyze the temperature and phonon-mode dependence of the ex-ph scattering processes, and accurately predict the phonon-assisted photoluminescence. The approach introduced in this work is general and provides a framework for investigating exciton dynamics in a wide range of materials.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Single-shot Z eff dense plasma diagnostic through simultaneous refraction and attenuation measurements with a Talbot–Lau x-ray moiré deflectometer

The Talbot–Lau x-ray moiré deflectometer is a powerful plasma diagnostic capable of delivering simultaneous refraction and attenuation information through the accurate detection of x-ray phase shift and intensity. The diagnostic can provide the index of refraction n = 1 - δ + iβ of an object (dense plasma, for example) placed in the x-ray beam by independently measuring both δ and β, which are directly related to the electron density ne and the attenuation coefficient μ, respectively. Since δ and β depend on the effective atomic number Z eff , a map can be obtained from the ratio between phase and absorption images acquired in a single shot. The Talbot–Lau x-ray moiré deflectometer and its corresponding data acquisition and processing are briefly described to illustrate how the above is achieved; Z eff values of test objects within the 4–12 range were obtained experimentally through simultaneous refraction and attenuation measurements. We show that Z eff mapping of objects does not require previous knowledge of sample length or shape. The determination of Z eff from refraction and attenuation measurements with Moiré deflectometry could be of high interest to various domains of HED research, such as shocked materials and ICF experiments, as well as material science and NDT.

47 OTHER INSTRUMENTATION↗

Developing a Process for Collaboration-Based Siting of a Federal Consolidated Interim Storage Facility in the United States: Learning from Communities Living with Legacy Waste

In June of 2023, the U.S. Department of Energy (DOE), Office of Nuclear Energy (NE) announced the selection of its Collaboration-Based Siting (CBS) Consortia, a group of 12 awardees, including the Consortium for Risk Evaluation with Stakeholder Participation (CRESP) (led by Vanderbilt University) to assist DOE-NE with the development of its process for siting a federal consolidated interim storage facility (FCISF) for spent nuclear fuel (SNF) storage. At this time, DOE NE is not soliciting interested host communities, rather the CBS Consortia are tasked with in-depth engagement, mutual learning, and capacity building to provide DOE NE with feedback on the CBS process. CRESP’s objective is to engage communities in two regions (the Pacific Northwest and the Southeast) with sites currently storing defense- and research-related SNF to foster learning concerning the best and worst practices in community participation in risk-informed decision making. This includes learning from existing structures for public input in radioactive waste management decision making [e.g. citizen advisory boards (CABs)] and other local parties about how to build and sustain trust among the parties. CRESP has been working to engage stakeholders and Tribes surrounding two DOE sites historically differing in receptiveness to engaging with DOE and trusting in DOE to accomplish its missions. CRESP’s approach to date has consisted of (1) engaging voluntarily members and former members of the DOE Office of Environmental Management’s CABs to develop a mutual understanding of their perspectives, values, and experiences related to risk and participatory decision making; (2) engaging members of those communities that would likely be part of any radioactive waste management discussions and who may provide valuable feedback for the development of the CBS process; and in the longer term, (3) engaging communities to foster knowledge sharing on understanding and definitions of risk and how risk is factored into community decision making. Our emphasis is to identify opportunities for improving risk communication frameworks, strategies, and decision making. The selection of a future FCISF site is likely to result in the creation of a structure similar to a CAB composed of members of the local community. We anticipate that these insights can help DOE NE learn from existing participatory risk communication structures in place at sites storing defenseor research-related SNF to understand best practices for fostering enduring and participatory relationships with future CABs. Within this paper, we (1) describe CRESP’s overall approach to assisting DOE NE with maturing the CBS process; (2) present a summary of preliminary phase 1 project results, including the development of a body of knowledge (describing available resources to support community engagement, risk communica tion, and participatory decision making) and community ecosystem information (leveraging demographic, social, economic, and environmental attribute mapping and advanced sentiment analysis of social media data); and (3) based on these results, provide observations for future research opportunities to support the development of CBS processes for radioactive waste management facilities, generally.

collaboration-based siting↗

ZEEMAN DOPPLER MAPS: ALWAYS UNIQUE, NEVER SPURIOUS?

Numerical models of atomic diffusion in magnetic atmospheres of ApBp stars predict abundance structures that differ from the empirical maps derived with (Zeeman) Doppler mapping (ZDM). An in-depth analysis of this apparent disagreement investigates the detectability by means of ZDM of a variety of abundance structures, including (warped) rings predicted by theory, but also complex spot-like structures. Even when spectra of high signal-to-noise ratio are available, it can prove difficult or altogether impossible to correctly recover shapes, positions, and abundances of a mere handful of spots, notwithstanding the use of all four Stokes parameters and an exactly known field geometry; the recovery of (warped) rings can be equally challenging. Inversions of complex abundance maps that are based on just one or two spectral lines usually permit multiple solutions. It turns out that it can by no means be guaranteed that any of the regularization functions in general use for ZDM (maximum entropy or Tikhonov) will lead to a true abundance map instead of some spurious one. Attention is drawn to the need for a study that would elucidate the relation between the stratified, field-dependent abundance structures predicted by diffusion theory on the one hand, and empirical maps obtained by means of “canonical” ZDM, i.e., with mean atmospheres and unstratified abundances, on the other hand. Finally, we point out difficulties arising from the three-dimensional nature of the atomic diffusion process in magnetic ApBp star atmospheres.

79 ASTRONOMY AND ASTROPHYSICS↗

Communication Characterization and Optimization of Applications Using Topology-Aware Task Mapping on Large Supercomputers

On large supercomputers, the job scheduling systems may assign a non-contiguous node allocation for user applications depending on available resources. With parallel applications using MPI (Message Passing Interface), the default process ordering does not take into account the actual physical node layout available to the application. This contributes to non-locality in terms of physical network topology and impacts communication performance of the application. In order to mitigate such performance penalties, this work describes techniques to identify suitable task mapping that takes the layout of the allocated nodes as well as the application's communication behavior into account. During the first phase of this research, we instrumented and collected performance data to characterize communication behavior of critical US DOE (United States - Department of Energy) applications using an augmented version of the mpiP tool. Subsequently, we developed several reordering methods (spectral bisection, neighbor join tree etc.) to combine node layout and application communication data for optimized task placement. We developed a tool called mpiAproxy to facilitate detailed evaluation of the various reordering algorithms without requiring full application executions. This work presents a comprehensive performance evaluation (14,000 experiments) of the various task mapping techniques in lowering communication costs on Titan, the leadership class supercomputer at Oak Ridge National Laboratory.

97 MATHEMATICS AND COMPUTING↗

Communication Characterization and Optimization of Applications Using Topology-Aware Task Mapping on Large Supercomputers

On large supercomputers, the job scheduling systems may assign a non-contiguous node allocation for user applications depending on available resources. With parallel applications using MPI (Message Passing Interface), the default process ordering does not take into account the actual physical node layout available to the application. This contributes to non-locality in terms of physical network topology and impacts communication performance of the application. In order to mitigate such performance penalties, this work describes techniques to identify suitable task mapping that takes the layout of the allocated nodes as well as the application's communication behavior into account. During the first phase of this research, we instrumented and collected performance data to characterize communication behavior of critical US DOE (United States - Department of Energy) applications using an augmented version of the mpiP tool. Subsequently, we developed several reordering methods (spectral bisection, neighbor join tree etc.) to combine node layout and application communication data for optimized task placement. We developed a tool called mpiAproxy to facilitate detailed evaluation of the various reordering algorithms without requiring full application executions. This work presents a comprehensive performance evaluation (14,000 experiments) of the various task mapping techniques in lowering communication costs on Titan, the leadership class supercomputer at Oak Ridge National Laboratory.

Sreepathi, Sarat↗

The mapping and differentiation of biological and environmental elemental signatures in the fossil remains of a 50 million year old bird

The preservation of fossils reflects the interplay of inorganic and organic chemical processes, which should be clearly differentiated to make interpretations about the biology of extinct organisms. A new coliiformes bird (mouse bird) from the ~50 million year old Green River Formation (Wyoming, USA) has here been analysed using synchrotron X-ray fluorescence and environmental scanning electron microscopy with an attached X-ray energy dispersive system (ESEM-EDS). The concentration and distribution of 16 elements (Si, P, S, Cl, K, Ca, Ti, Mg, Fe, Ni, Cu, Zn, As, Br, Ba, Hg) has been mapped for individual points on the sample. S, Cu and Zn map distinctly within visibly preserved feathers and X-ray Absorption Spectroscopy (XAS) shows that S and Cu within the feathers are organically bound in a similar manner to modern feathers. The morphological preservation of the feathers, on both macro- and microscopic scales, is variable throughout the fossil and the differences in the lateral microfacies have resulted in a morphological preservation gradient. This study clearly differentiates endogenous organic remains from those representing exogenous overprinted geochemical precipitates and illustrates the chemical complexity of the overall taphonomic process.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Long-term Study of the Solar Filaments from the Synoptic Maps as Derived from H{sub α} Spectroheliograms of the Kodaikanal Observatory

The century long (1914–2007) H{sub α} (656.28 nm) spectroheliograms from the Kodaikanal Solar Observatory (KSO) have been recently digitized. Using these newly calibrated, processed images we study the evolution of dark elongated on-disk structures called filaments, which are potential representatives of magnetic activities on the Sun. To our knowledge, this is the oldest uniform digitized data set with daily images available today in H{sub α}. We generate Carrington maps for the entire time duration and try to find the correlations with maps of the same Carrington rotation from the Ca ii K KSO data. Filaments are segmented from the Carrington maps using a semi-automated technique and are studied individually to extract their centroids and tilts. We plot the time-latitude distribution of the filament centroids, producing a butterfly diagram which clearly shows the presence of poleward migration. We separate polar filaments for each cycle and try to estimate the delay between the polar filament number cycle and the sunspot number cycle peaks. We correlate this delay with the delay between polar reversal and sunspot number maxima. This provides new insight on the role of polar filaments on polar reversal.

79 ASTRONOMY AND ASTROPHYSICS↗

Therapeutic targeting of membrane-associated proteins in central nervous system tumors

The activity of the most complex system, the central nervous system (CNS) is profoundly regulated by a huge number of membrane-associated proteins (MAP). A minor change stimulates immense chemical changes and the elicited response is organized by MAP, which acts as a receptor of that chemical or channel enabling the flow of ions. Slight changes in the activity or expression of these MAPs lead to severe consequences such as cognitive disorders, memory loss, or cancer. CNS tumors are heterogeneous in nature and hard-to-treat due to random mutations in MAPs; like as overexpression of EGFRvIII/TGFβR/VEGFR, change in adhesion molecules α5β3 integrin/SEMA3A, imbalance in ion channel proteins, etc. Extensive research is under process for developing new therapeutic approaches using these proteins such as targeted cytotoxic radiotherapy, drug-delivery, and prodrug activation, blocking of receptors like GluA1, developing viral vector against cell surface receptor. The combinatorial approach of these strategies along with the conventional one might be more potential. Henceforth, our review focuses on in-depth analysis regarding MAPs aiming for a better understanding for developing an efficient therapeutic approach for targeting CNS tumors.

60 APPLIED LIFE SCIENCES↗

Planck 2015 results: II. Low Frequency Instrument data processings

In this paper, we present an updated description of the Planck Low Frequency Instrument (LFI) data processing pipeline, associated with the 2015 data release. We point out the places where our results and methods have remained unchanged since the 2013 paper and we highlight the changes made for the 2015 release, describing the products (especially timelines) and the ways in which they were obtained. We demonstrate that the pipeline is self-consistent (principally based on simulations) and report all null tests. For the first time, we present LFI maps in Stokes Q and U polarization. Finally, we refer to other related papers where more detailed descriptions of the LFI data processing pipeline may be found if needed.

79 ASTRONOMY AND ASTROPHYSICS↗

Field evaluation of remote wind sensing technologies: Shore-based and buoy mounted LIDAR systems

In developing a national energy strategy, the United States has a number of objectives, including increasing economic growth, improving environmental quality, and enhancing national energy security. Wind power contributes to these objectives through the deployment of clean, affordable and reliable domestic energy. To achieve U.S. wind generation objectives, the Wind and Water Power Program within the Department of Energy’s (DOE) Office of Energy Efficiency and Renewable Energy (EERE) instituted the U.S. Offshore Wind: Removing Market Barriers Program in FY 2011. Accurate and comprehensive information on offshore wind resource characteristics across a range of spatial and temporal scales is one market barrier that needs to be addressed through advanced research in remote sensing technologies. There is a pressing need for reliable offshore wind-speed measurements to assess the availability of the potential wind energy resource in terms of power production and to identify any frequently occurring spatial variability in the offshore wind resource that may impact the operational reliability and lifetime of wind turbines and their components and to provide a verification program to validate the “bankability” of the output of these alternative technologies for use by finance institutions for the financing of offshore wind farm construction. The application of emerging remote sensing technologies is viewed as a means to cost-effectively meet the data needs of the offshore wind industry. In particular, scanning and buoy mounted LIDAR have been proposed as a means to obtain accurate offshore wind data at multiple locations without the high cost and regulatory hurdles associated with the construction of offshore meteorological towers. However; before these remote sensing technologies can be accepted the validity of the measured data must be evaluated to ensure their accuracy. The proposed research will establish a unique coastal ocean test-bed in the Mid-Atlantic for the evaluation of LIDAR-based wind measurement systems to validate the accuracy of remotely measured wind data in marine applications. Specifically, the test-bed will be utilized to systematically evaluate the capability of emerging scanning LIDAR and buoy mounted vertically profiling LIDAR by: (1) Evaluating a fixed scanning LIDAR against land-based 50 and 60 meter high meteorological masts fitted with research quality cup-vane and/or sonic anemometers; (2) Evaluating a buoy mounted vertically profiling LIDAR fixed on land and floating in a sheltered bay against a co-located 60 meter high meteorological mast fitted with a research quality cup-vane and/or sonic anemometers and the fixed scanning LIDAR; and (3) Offshore field evaluation of both LIDAR platforms through a comparison of the fixed scanning LIDAR data and data obtained by the buoy mounted LIDAR located 10 miles offshore. The proposed research will systematically validate Light Detection and Ranging (LIDAR) based wind measurement systems and assess the temporal and spatial variability of the offshore wind resource in the Mid-Atlantic east of New Jersey. The goal of the proposed project is to address the technical and commercial challenges of the offshore wind energy industry by validating and assessing cost-effective, over ocean wind resource characterization technologies. The objective is to systematically evaluate the capability of both scanning and vertically profiling LIDARs to accurately measure 3D wind fields through comparison with fixed met masts and intercomparison among LIDAR platforms. Once validated, data collected by both buoy mounted vertically profiling LIDARs and shore-based, pulsed horizontally scanning LIDARs can be used to accurately assess offshore wind resources and to quantify the spatial and temporal variability in the offshore wind fields. One of the fundamental research questions to be addressed in phase 1 is the assessment of various measurement and data processing schemes to retrieve accurate wind vectors in the marine environment over large sampling ranges (10 to 12 km) and varying atmospheric aerosol levels. Atmospheric conditions and aerosol content within the coastal ocean region of the Mid-Atlantic seaboard of the US can vary significantly over short time periods in response to frontal passages and extratropical and tropical low pressure system passage offshore of the coast. Since aerosols provide the scattering medium for the determination of LIDAR Doppler shifts in the atmosphere the accuracy and range of LIDAR derived velocity measurements as a function of variation in aerosol content in the marine environment is a key research question to be addressed. In phase 1, it is desired to capture as much variation in atmospheric conditions and aerosol content as possible. To this end, collocated measurements of LIDAR and standard anemometer wind fields will be captured by the project PIs over all four seasons and during specific events (e.g., coastal low pressure system passage) in year 1. Additionally, since the meteorological masts are permanent structures, additional events can be captured over the three year duration of the field research project. All research instruments are owned by Fishermen’s Energy and made available to the PIs though a lease agreement as part of the DOE grant. Energy Fishermen’s Energy will be responsible for the operation and maintenance of the scanning LIDAR and met mast anemometers. On a daily basis, environmental data and systems performance indicators will be transmitted from each measurement station to the Fishermen’s project team consisting of both in-house personnel and equipment manufacturer engineers. Data sets include compiled LIDAR files as well as data sets from ancillary sensors. Diagnostic parameters to be monitored include standard deviations of measured values, battery levels and charging systems output, and the operational status. Once data have been confirmed as complete and reliable, files will be transferred to the Garrad Hassan (a subcontractor to Fishermen’s Energy) for incorporation in to the validation database, which is accessible to other scientific team members. Data collection times and durations will be determined by the PI and Co-PIs in consultation with instrument engineers to ensure the capture of data representative of the expected range of mid-Atlantic atmospheric conditions (e.g., temperature, moisture, coastal low pressure systems, tropical systems, rain, snow, fog). The collection and processing of the data is a function of site specific measurement requirements (Kelley et.al. 2007; Hannon et.al. 2008). To determine the optimal profiles of wind speed and direction from the LIDAR radial velocities as a function of azimuth angle, rigorous estimates of the bias and random error of each radial velocity estimate are required. Lockheed Martin Coherent Technologies, Inc., under contract with Fishermen’s Energy, will provide analyses of raw and processed data using various scan patterns to determine optimal performance settings for the pulsed scanning LIDAR. Once optimized, appropriate processing and analyses techniques will be evaluated by Garrad Hassan for use in validating the accuracy of the LIDAR wind field measurements against the standard anemometer measurements from the meteorological masts. The most attractive capability of the scanning LIDAR is the ability to provide high spatial resolution observations in a three-dimensional volume which provides superior statistical accuracy due to the large number of samples obtained. Each radial scan provides measurements in 100 range gates over a distance of 10 to 12 km at an update rate of 5 to 10 Hz and rotation of 2.5° per second. Each rotation at a fixed azimuth requires 2.4 minutes. Depending on the number of azimuths desired a complete scan can take up to 10 minutes or longer to complete. Once collected the radial velocities are processed to produce vector wind velocity estimates based on a set of data distributed in angle and range around points of interest, typically a standard grid within the radial wind map. To calculate wind vectors over a limited spatial area of interest for the comparison of data with other measurement platforms a localized least-squares approach has been applied by Hannon et.al. (2008) and a Variation Assimilation (VAR) processing technique has been applied by Chan and al Assimilation (VAR) processing technique has been applied by Chan and Shao (2006). Additionally, Kelley et.al. (2007) applied a “stare” technique that fixed a scanning LIDAR in both azimuth and elevation angles to measure over collocated sampling volumes of the LIDAR and a 3D sonic anemometer mounted to a fixed mast. Although the stare technique is limited to wind directions aligned with the sampling radial of the LIDAR, it does provide a direct comparison of sampling volumes. Each of the processing techniques described above (and possibly others) will be evaluated to determine the validity of the LIDAR derived wind fields in the marine environment. Numerical methods such as linear regression and comparison of probability density functions of wind fields measured by each instrument platform will be used to assess the processing techniques. Linear regression has the advantage of directly evaluating corresponding pairs of wind data measured by each instrument and can lend insight into deviations and bias between instruments as a function of wind speed. Assessment of the coherency between the probability density function of the wind measured by each instrument provides insight into processes that may not be accurately resolved by each instrument at specific frequencies. Once processed and assessed the most appropriate technique will be utilized to provide valid wind measurements from the pulsed scanning LIDAR. A detailed analysis of the measurement data from the LIDAR and the three meteorological towers and comparison of the coastal wind characteristics from the different systems will be performed by the CO_PI at NREL. This analysis will evaluate how the WT LIDAR performance and measurement of the wind characteristics vary with distance from the LIDAR and by atmospheric conditions; using the tower measurements at different distances (4.8, 9.6, and 19 km) from the LIDAR as a reference. The comparative analysis will include, to the extent possible, evaluation of parameters such as wind speed and direction distributions, wind shear, turbulence intensity and their variations by atmospheric conditions, month or season, and time of day.

17 WIND ENERGY↗

A physics-informed and hierarchically regularized data-driven model for predicting fluid flow through porous media

This paper presents a new deep learning data-driven model for predicting structure dependent pore-fluid velocity fields in rock. The model is based on a Convolutional Auto-Encoder (CAE) artificial neural network capable of learning from image data generated by direct numerical simulations of fluid flow through pore-structures, such as by Lattice Boltzmann or molecular dynamics methods. The main novelty of the model in comparison to previous CAE-based data-driven approaches consists of three parts. The first is a methodology for decomposing the full-domain of the porous media into sub-regions, or “sub-domains”, in order to reduce the overall size of the CAE, batch process the sub-domains in parallel, and enable the CAE to learn local and generalizable nonlinear mappings of pore-fluid velocities. The second consists of embedding the finite difference solutions of the incompressible Navier-Stokes and continuity equations into convolutional layers prior to the CAE in order to provide the CAE with knowledge of fluid dynamics physics (PhyFlow). The third main novelty is that the training of the CAE is regularized with a hierarchical loss function that encourages the learning of fluid flow patterns (in a way similar to ranked modes in principal component analysis), ranking from most to least important. This is shown to increase the stability in learning, reduce over-fitting, and promote interpretability of the CAE neural network layers (HierCAE). The comprehensive new data-driven model, which we call the PhyFlow-HierCAE model, is shown to exhibit improved accuracy and generalizability of flow field predictions over conventional CAE models, attributable to the embedded physical knowledge and the hierarchical regularization, as well as realize orders of magnitude speed-ups in computation times as a surrogate for the direct numerical simulations. Examples of training and forward predictions on unseen pore-structures are provided and evaluated for data from Lattice Boltzmann and molecular dynamics simulations of pore-fluid flow. The model is shown to be a fast and accurate emulator (or “surrogate”) for predicting effective permeability of unseen pore-structures based on learning from relatively small direct numerical simulation datasets.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Shock wave mediated plume chemistry for molecular formation in laser ablation plasmas

Laser ablation is used in a variety of applications albeit formation mechanisms of molecules and nanoclusters are not well understood. We investigated the formation mechanisms of AlO molecules during complex interactions between an Al laser plume expanding into ambient air at atmospheric pressure levels. To produce the plasma a high-purity Al target was ablated using 1064 nm, 6 ns laser pulses. Our results show that the plasma chemistry leading to the formation of AlO is mediated by shock waves. During the early times of plasma expansion, the generated shock waves at the plume edges act as a barrier for the combustion process and the molecular formation is prevalent after the shockwave collapse. The temporally and spatially resolved contour mapping of Al and AlO highlight the formation routes and persistence of species in the plasma and its relation to plume hydrodynamics.

2D fast imaging↗