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At least 991 records · Page 55

Pervasive epigenetic effects of Drosophila euchromatic transposable elements impact their evolution

Transposable elements (TEs) are widespread genomic parasites, and their evolution has remained a critical question in evolutionary genomics. Here, we study the relatively unexplored epigenetic impacts of TEs and provide the first genome-wide quantification of such effects in D. melanogaster and D. simulans. Surprisingly, the spread of repressive epigenetic marks (histone H3K9me2) to nearby DNA occurs at >50% of euchromatic TEs, and can extend up to 20 kb. This results in differential epigenetic states of genic alleles and, in turn, selection against TEs. Interestingly, the lower TE content in D. simulans compared to D. melanogaster correlates with stronger epigenetic effects of TEs and higher levels of host genetic factors known to promote epigenetic silencing. Our study demonstrates that the epigenetic effects of euchromatic TEs, and host genetic factors modulating such effects, play a critical role in the evolution of TEs both within and between species.

Life Sciences & Biomedicine - Other Topics↗

Microgravity Science Glovebox Investigations SUBSA

Solidification Using a Baffle in Sealed Ampoules (SUBSA) is a Microgravity Science Glovebox Investigation manifested for the UF2 flight, on the U.S. Orbiter 111, to the International Space Station (ISS). SUBSA complements the "parent" flight investigation CG13 (Space-and Groundbased Crystal Growth Using a Baffle). During directional solidification, the disk-shaped baffle acts as a partition, creating a small melt zone at the solid-liquid interface. As a result, the level of buoyancy-driven convection at the interface is significantly reduced. In space, the baffle will reduce convection driven by residual micro acceleration. The baffle reduces the Rayleigh number (Ra) of the melt by a factor of 103. The combined effect of the baffle and microgravity will yield a reduction in Ra by a factor of 107 to 109 approaching effectively the acceleration conditions in "nanogravity". The results of ground based tests and numerical modeling will be presented. The furnace for directional solidification (flight hardware and the ground unit) was developed by Tec-Masters Inc. The flight ampoules were produced jointly at Rensselaer, Tec-Masters Inc. and Crystallod Inc.

Ostrogorsky, A.↗

Strategies for analyzing mixed pixels in remotely sensed imagery

Two uncalibrated synthetic aperture radar (SAR) scenes from Death Valley, California, and two uncalibrated scenes from Owens Valley, California, were used to test a technique to identify and separate the primary factors associated with multipolarized radar image sets. Unique to the technique is the concept that varied types of radar polarization signatures are a result of the interaction of a few physical factors (e.g., roughness, volume scattering, and dielectric constant). Thus, the varied signatures observed in an image reflect the interaction between these factors. The objectives are to first separate the interaction of factors directly influencing the measurement and to attempt to identify these factors. Interpretation of the SAR image sets proceeds by testing models that hypothesize the cause and effect relations between those factors directly affecting the radar measurement and those features of interest to the interpreter. The results of our analysis indicated two consistent endmember types over all four image scenes. These types are defined by a high flat polarized signature near a level of 255 DN and a low level flat signature near 0 DN for all polarizations. Four other endmember types were also isolated. The spatial distribution of these endmember types indicates possible correspondence to surface volume scattering and changes in surface dielectric. However, the shapes of these endmember types were different from scene to scene.

Smith, M.↗

Effect of debond growth on stress-intensity factors in a cracked orthotropic sheet stiffened by a semi-infinite orthotropic sheet

Stress-intensity factors are determined for a cracked infinite sheet adhesively bonded to a stringer, and debonding of the adhesive layer is predicted. The stringer is modeled as a semi-infinite sheet. Adhesive nonlinearity is also included. Both the sheet and stringer are treated as homogeneous, orthotropic materials. A set of integral equations is formulated and solved to obtain the adhesive shear stresses and crack-tip stress-intensity factors. Adhesive debonding is predicted using a rupture criterion based on the combined adhesive stresses. When the crack is not under the stringer, the debond extends along the edge of the stringer. When the crack tip is beneath the stringer, the debond grows to the end of the crack, then along the edge of the stringer. Stress levels required for debond initiation decrease as the crack tip is moved beneath the stringer. With a nonlinear adhesive, the debond initiates at higher applied stress levels than in linear adhesive cases. Compared with the linear adhesive solution, modeling a nonlinear adhesive causes the stress-intensity factor to increase when the bond is assumed to remain intact but causes the stress-intensity factor to decrease when debonding is included.

Bigelow, C. A.↗

Effect of adhesive debond on stress-intensity factors in bonded composite panels

Stress-intensity factors are calculated for a cracked infinite sheet adhesively bonded to a stringer, and debonding of the adhesive layer is predicted. The stringer is modeled as a semiinfinite sheet. Adhesive nonlinearity is also included. Both the sheet and stringer are treated as homogeneous, orthotropic materials, a set of integral equations is formulated and solved to obtain the adhesive shear stresses and crack-tip stress-intensity factors. Adhesive debonding is predicted using a rupture criterion based on the combined adhesive stresses. A through-the-thickness crack is located in the infinite sheet perpendicular to the edge of the stringer. When the crack is not under the stringer, the debond extends along the edge of the stringer. When the crack tip is beneath the stringer, the debond extends to the crack tip, then along the edge of the stringer. Stress levels required for debond initiation decrease as the crack tip is moved beneath the stringer. With a nonlinear adhesive, the debond initiates at higher applied stress levels than in linear adhesive cases. Compared with the linear adhesive solution, modeling a nonlinear adhesive causes the stress-intensity factor to decrease when debonding is included.

Bigelow, C. A.↗

Pulmonary toxicity of simulated lunar and Martian dusts in mice: I. Histopathology 7 and 90 days after intratracheal instillation

NASA is contemplating sending humans to Mars and to the moon for further exploration. Volcanic ashes from Arizona and Hawaii with mineral properties similar to those of lunar and Martian soils, respectively, are used to simulate lunar and Martian environments for instrument testing. Martian soil is highly oxidative; this property is not found in Earth's volcanic ashes. NASA is concerned about the health risk from potential exposure of workers in the test facilities. Fine lunar soil simulant (LSS), Martian soil simulant (MSS), titanium dioxide, or quartz in saline was intratracheally instilled into groups of 4 mice (C57BL/6J) at 0.1 mg/mouse (low dose, LD) or 1 mg/mouse (high dose, HD). Separate groups of mice were exposed to ozone (0.5 ppm for 3 h) prior to MSS instillation. Lungs were harvested for histopathological examination 7 or 90 days after the single dust treatment. The lungs of the LSS-LD groups showed no evidence of inflammation, edema, or fibrosis; clumps of particles and an increased number of macrophages were visible after 7 days but not 90 days. In the LSS-HD-7d group, the lungs showed mild to moderate alveolitis, and perivascular and peribronchiolar inflammation. The LSS-HD-90d group showed signs of mild chronic pulmonary inflammation, septal thickening, and some fibrosis. Foci of particle-laden macrophages (PLMs) were still visible. Lung lesions in the MSS-LD-7d group were similar to those observed in the LSS-HD-7d group. The MSS-LD-90d group had PLMs and scattered foci of mild fibrosis in the lungs. The MSS-HD-7d group showed large foci of PLMs, intra-alveolar debris, mild-to-moderate focal alveolitis, and perivascular and peribronchiolar inflammation. The MSS-HD-90d group showed focal chronic mild-to-moderate alveolitis and fibrosis. The findings in the O(3)-MSS-HD-90d group included widespread intra-alveolar debris, focal moderate alveolitis, and fibrosis. Lung lesions in the MSS groups were more severe with the ozone pretreatment. The effects of O(3) and MSS coexposure appeared to be more than additive. Results for the TiO(2) and quartz controls were consistent with the known pulmonary toxicity of these compounds. The overall severity of lung injury was TiO(2) < LSS < MSS < O(3) + MSS < quartz. Except for TiO(2), the increased duration of dust presence in the lung from 7 to 90 days transformed the acute inflammatory response to a chronic inflammatory lesion. This study showed that LSS and MSS are more hazardous in the lungs than nuisance dusts.

Non-programmatic↗

Distortion and regulation characterization of a Mapham inverter

Output voltage Total Harmonic Distortion (THD) of a 20kHz, 6kVA Mapham resonant inverter is characterized as a function of its switching-to-resonant frequency ratio, f sub s/f sub r, using the EASY5 engineering analysis system. EASY5 circuit simulation results are compared with hardware test results to verify the accuracy of the simulations. The effects of load on the THD versus f sub s/f sub r ratio is investigated for resistive, leading, and lagging power factor load impedances. The effect of the series output capacitor on the Mapham inverter output voltage distortion and inherent load regulation is characterized under loads of various power factors and magnitudes. An optimum series capacitor value which improves the inherent load regulation to better than 3 percent is identified. The optimum series capacitor value is different than the value predicted from a modeled frequency domain analysis. An explanation is proposed which takes into account the conduction overlap in the inductor pairs during steady-state inverter operation, which decreases the effective inductance of a Mapham inverter. A fault protection and current limit method is discussed which allows the Mapham inverter to operate into a short circuit, even when the inverter resonant circuit becomes overdamped.

Sundberg, Richard C.↗

Excited states in warm and hot dense matter

Accurate modeling of warm and hot dense matter is challenging in part due to the multitude of excited states that must be considered. Here, we present a variational framework that models these excited states. In this framework an excited state is defined by a set of effective one-electron occupation factors, and the corresponding energy is defined by the effective one-body energy with an exchange and correlation term. Here, the variational framework is applied to an atom-in-plasma model (a generalization of the so-called average atom model). Comparisons with a density functional theory based average atom model generally reveal good agreement in the calculated pressure, but our model also gives access to the excitation energies and charge state distributions.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Evaluation of a methodology for model identification in the time domain

A model identification methodology for structural dynamics has been applied to simulated vibrational data as a first step in evaluating its accuracy. The evaluation has taken into account a wide variety of factors which affect the accuracy of the procedure. The effects of each of these factors were observed in both the response time histories and the estimates of the parameters of the model by comparing them with the exact values of the system. Each factor was varied independently but combinations of these have also been considered in an effort to simulate real situations. The results of the tests have shown that for the chain model, the procedure yields robust estimates of the stiffness parameters under the conditions studied whenever uniqueness is ensured. When inaccuracies occur in the results, they are intimately related to non-uniqueness conditions inherent in the inverse problem and not to shortcomings in the methodology.

Beck, R. T.↗

Commensuration Effects in Layered Nanoparticle Solids.

We have developed a hierarchical nanoparticle transport simulator (HINTS) and adapted it to study commensuration effects in two classes of nanoparticle (NP) solids: (1) a bilayer NP solid (BNS) with an energy offset and (2) a BNS as part of a field effect transistor (FET). HINTS integrates the ab initio characterization of single NPs with the phonon-assisted tunneling transition model of the NP-NP transitions into a kinetic Monte Carlo based simulation of the charge transport in NP solids. First, we studied a BNS with an interlayer energy offset Delta, possibly caused by a fixed electric field. Our results include the following. First, in the independent energy-offset model, we observed the emergence of commensuration effects when scanning the electron filling factor (FF) across integer values. These commensuration effects were profound as they reduced the mobility by several orders of magnitude. We analyzed these commensuration effects in a five-dimensional parameter space, as a function of the on-site charging energy E-C, energy offset Delta, disorder D, the electron FF, and temperature k(B)T. We demonstrated the complexity of our model by showing that at integer FFs commensuration effects are present in some regions of the parameter space, while they vanish in other regions, thus defining distinct dynamical phases of the model. We determined the phase boundaries between these dynamical phases. Second, using these results as a foundation, we shifted our focus to the experimentally much-studied NP-FETs. NP-FETs are also characterized by an interlayer energy offset Delta, which, in contrast to our first model, is set by the gate voltage V-G and thereby related to the electron FF. We repeated many of our simulations and again demonstrated the emergence of commensuration effects and distinct dynamical phases in these NP-FETs. Notably, the commensuration effects in the NP-FETs showed many similarities to those in the independent energy-offset BNS.

Qu, Luman↗

Numerical Analysis of Blast Effects and Mitigation in the Far-Field from Small Explosions

Requirements for explosive safety are often given in terms of a “K-Factor”, correlating incident blast effects with the distance and TNT equivalent weight of an explosion. Traditionally, this is conducted using empirical correlations to experimental measurements (e.g., the Kingery–Bulmash equations). In the far-field, empirical verification of incident overpressure and impulse magnitudes can be difficult; extrapolations from data give expected values at reasonable standoff distances that sometimes are too small to measure on available equipment but are larger than some regulations require. The present paper describes the results of numerical hydrocode analysis to verify the expected incident overpressure and impulse from small hemispherical ground charges of TNT at these relatively large distances. Furthermore, the dynamic effect of incident blast waves on lightweight, modular mitigation barriers is studied to gauge their effectiveness at providing safety standard compliance.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗