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DOE OSTI2021

Modeling Induction Stirring and Particle Tracking in Molten Uranium

Two independent numerical models have been developed to simulate the behavior of carbon impurities in molten uranium metal. Informed by experimental parameters, one model was created using the commercial software Star-CCM+ and compared with another developed using open-source codes, including OpenFOAM, Finite Element Method Magnetics (FEMM) and a First Passage Kinetic Monte Carlo (FPKMC) approach. The target experimental system features a 404g uranium metal charge containing an average carbon concentration of 139 ppm which was melted in a vacuum induction furnace at 1400° C then resolidified. The microstructures of the uranium and its impurities before and after melting have been characterized and reported separately. Prior to simulating the uranium-carbon system described, the numerical models were validated using a previously published nonradioactive experimental system to ensure agreement with expected output values. Focus has been placed on modeling velocity fields under induction stirring and impurity particle trajectories.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

NASA NTRS2023

TRACER Lightning Mapping Array Field Campaign Report

Our observational contribution to the U.S. Department of Energy Atmospheric Radiation Measurement (ARM) user facility’s Tracking Aerosol Convection Interactions Experiment (TRACER) was the deployment of additional Lightning Mapping Array sensors to provide enhanced capability to the Houston Lightning Mapping Array (HLMA) during the TRACER intensive operational period. To that end, the Texas Tech University personnel (Professor Bruning and Dr. Brunner, and graduate students Jessica Souza, David Singewald, Stephanie Weiss, and Matthew Miller) deployed two portable LMA antennae at locations G and B shown in the map below. The map also shows the predicted lightning flash detection efficiency in black contours, as well as color-shaded very-high-frequency (VHF) source detection efficiency, which roughly corresponds to the sensitivity to lightning channel detail.

Tracking Aerosol Convection Interactions Experimen↗

DOE OSTI2018

Understanding and quantifying the systematic effects of clutter within a radiation detection scene

Because of low signal-to-noise ratios, the main difficultly in real-world detection scenarios is distinguishing between benign sources and potentially-threatening radioactive materials. The variability in observed signal during a radiation detection search operation can be contributed to the stochastic nature of the underlying physics and the systematic errors inherent to the detection systems employed. This variability is compounded for dynamic detection scenarios, where objects, referred to as clutter, traverse through the primary detection scene, introducing potential suppressions in the observed signal due to the attenuation of background radiation. This study examines the impact that clutter, namely automobiles such as small utility vehicles, sedans, and trucks, produces on the observed signal in a 2 in. × 4 in. × 16 in. NaI(Tl) detector. The clutter is identified and tracked in the detection scene using a time-synced video camera and a 2-D light distance and ranging contextual sensors. Two experiments were performed on the Oak Ridge National Laboratory reservation: one using a distributed source within the scene to understand the systematics of detecting and analyzing the clutter, and the second experiment mimicking an urban environment with large buildings positioned on either side of a roadway. The experiments exhibited unique results in the amount of signal suppression and variability of the cluttered signal, both demonstrating an observable suppression from the clutter-free background. These results reveal a new potential category of signal noise intrinsic to real-world detection scenarios that should be considered when establishing detection thresholds based on expected values.

Stewart, Ian R.↗

DOE OSTI2025

Summary of Analytical Services for the Hanford Site Radionuclide NESHAP Program

This document is a summary of the point source analytical requirements used to demonstrate compliance for the Department of Energy (DOE) Hanford Site operations with 40 Code of Federal Regulations (CFR) Part 61, “National Emission Standards for Hazardous Air Pollutants,” (NESHAP) Subpart H, “National Emission Standards for Emissions of Radionuclides Other Than Radon From Department of Energy Facilities,” and the Washington Administrative Code (WAC) 246-247, “Radiation Protection – Air Emissions.” This reference collects information from multiple source documents and is not intended to create, supersede, replace or over-ride any existing contractual, DOE, federal or state statutes, regulations, compliance agreements, orders, permits, licenses or other requirements. The requirement source document governs where any difference may exist. The Hanford Mission Integration Solutions (HMIS) Environmental organization has been contracted by DOE to manage and report data collected from the sampling and monitoring of radioactive air emissions point sources, colloquially called stacks. The Environmental organization coordinates the analyses and reporting of samples collected at various facilities across the Hanford Site. These facilities operate approximately 52 stacks that require sampling, monitoring or estimating radioactive air emissions. The stacks are operated by Bechtel National, Inc. (BNI), Central Plateau Cleanup Company (CPCCo), Hanford Tank Waste Operations & Closure (H2C), Hanford Laboratory Management and Integration (HLMI), and Pacific Northwest National Laboratory (PNNL). Stack samples from CPCCo, HLMI and H2C facilities are collected by the operating contractor staff, delivered to HMIS, and then shipped to an offsite contracted laboratory for analyses. The field and laboratory sample data uploaded into the Sample Management and Analytical Results Tracking (SMART) database are used to calculate sample volumes and concentrations. Sample concentrations are evaluated for compliance with federal and state regulations, permits, and license requirements. The SMART database also calculates total curies released for sampled point sources and stacks. Point source effluent concentrations and releases are published annually in publicly available reports. The BNI and PNNL operate several DOE-Hanford Field Office (HFO) stacks subject to the requirements of 40 CFR 61, Subpart H and WAC 246-247. The concentrations, curies released and dose modeling evaluation for these stacks are included in the DOE-HFO annual radionuclide NESHAP report. The sample collection, analyses and emissions estimates for these stacks are outside the scope of HMIS contracted responsibilities and not addressed further in this document.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2025

BOSC 2025, the 26th Bioinformatics Open Source Conference

The 26th annual Bioinformatics Open Source Conference (BOSC 2025, open-bio.org/events/bosc-2025) brought its community-driven focus on open-source bioinformatics and open science to the 2025 conference on Intelligent Systems for Molecular Biology and the European Conference on Computational Biology (ISMB/ECCB 2025). Since its launch in 2000, BOSC has been the premier annual meeting covering open-source bioinformatics and open science. Framed by two keynote addresses and a thought-provoking panel discussion, the two-day conference included sessions dedicated to open data, analytic tools and pipelines, workflow platforms, knowledge representation, and the application of AI/ML. The first keynote talk was delivered by Christine Orengo: “Working together to develop, promote and protect our data resources: Lessons learnt developing CATH and TED.” A joint session with the Bio-Ontologies and Knowledge Representation (BOKR) track the second day of BOSC started with a keynote talk by Chris Mungall entitled “Open Knowledge Bases in the Age of Generative AI”. A closing panel on Data Sustainability, moderated by Mónica Muñoz Torres, featured panelists Scott Edmunds, Varsha Khodiyar, Tony Burdett, Nicky Mulder, and Chris Mungall. This year, the CollaborationFest collaborative work event that typically precedes or follows ISMB was incorporated as part of the main conference and organized by BOSC with help from the Function and 3D-SIG tracks.

bioinformatics↗

DOE OSTI2019

Seeking for sterile neutrinos with displaced leptons at the LHC

We study the signal of long-lived sterile neutrino at the LHC produced through the decay of the W boson. It decays into charged lepton and jets. The characteristic signature is a hard prompt lepton and a lepton from the displaced decay of the sterile neutrino, which leads to a bundle of displaced tracks with large transverse impact parameter. Different from other studies, we neither reconstruct the displaced vertex nor place requirement on its invariant mass to maintain sensitivity for low sterile neutrino masses. Instead, we focus on the displaced track from the lepton. A difficulty for low mass sterile neutrino study is that the displaced lepton is usually non-isolated.Therefore, leptons from heavy flavor quark is the major source of background. We closely follow a search for displaced electron plus muon search at CMS and study their control regions, which is related to our signal regions, in great detail to develop a robust estimation of the background for our signals. After further optimization on the signal limiting the number of jets, low H T and large lepton displacement d 0 to suppress SM background, we reach an exclusion sensitivity of about 10 -8 (10 -5 ) for the mixing angle square at 10 (2) GeV sterile neutrino mass respectively. Thestrategy we propose can cover the light sterile masses complimentary to beam dumpand forward detector experiments

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2020

Fluid Dynamics Effects on Microstructure Prediction in Single-Laser Tracks for Additive Manufacturing of IN625

Single-track laser fusion were simulated using a heat-transfer-solidification-only (HTS) model and its extension with fluid dynamics (HTS_FD) model using a parallel open-source code, which included laminar fluid dynamics, flat-free surface of the molten alloy, heat transfer, phase-change, evaporation, and surface tension phenomena. The results illustrate that the fluid dynamics affects the solidification and ensuing microstructure. For the HTS_FD simulations, thermal gradient, G was found to exhibit a maximum at the extremity of the solidified pool ( i.e. , at the free surface), while for HTS simulations, G exhibited a maximum around the entire edge of the solidified pool. HTS_FD simulations predicted a wider range of cooling rates than the HTS simulations, exhibited an increased spread in the solidification speed, V variation within the melt-pool with respect to the HTS model results. Primary dendrite arm spacing (PDAS) were evaluated based on power law correlations and marginal stability theory models using the ( G , V ) from HTS and HTS_FD simulations to quantify the effect of the fluid dynamics on the microstructure. At low-laser powers and low-scan speeds, the PDAS obtained with the fluid dynamics model (HTS_FD) was larger by more than 30 pct with respect to the PDAS calculated with the simple HTS model. A new PDAS correlation, i.e. , $ \lambda_{1} \left[ {\mu {\text{m}}} \right] = 832\;G\left[ {\text{K/m}} \right]^{ - 0.5} V\left[ {\text{m/s}} \right]^{ - 0.25} $ , which uses the ( G , V ) results from the HTS_FD model was developed and validated against experimental results.

36 MATERIALS SCIENCE↗

DOE OSTI2021

Tracking the phase changes in micelle-based NiGa nanocatalysts for methanol synthesis under activation and working conditions

The hydrogenation of CO 2 into high energy density fuels such as methanol, where the required H 2 is obtained from renewable sources, is of utmost importance for a sustainable society. In recent years, NiGa alloys have attracted attention as promising catalyst material systems for the hydrogenation of CO 2 into methanol at ambient pressures. They thus represent an energy-saving alternative to the Cu-based catalysts employed in today's catalytic industry that require high pressures for the CO 2 hydrogenation. However, the underlying reaction mechanisms for the NiGa system are still under debate. One of the challenges here is to unravel the evolution and coexistence of the different species in the heterogeneous NiGa catalyst system under activation and reaction conditions. To shed light on their evolution under activation in H 2 and their catalytic roles under CO 2 hydrogenation working conditions on well-defined Ni 3 Ga 1 and Ni 5 Ga 3 nanoparticle (NP) catalysts, we employed a multi-probe approach in this study. It included advanced machine learning-based analysis of operando X-ray absorption spectroscopy data combined with operando powder X-ray diffraction and near ambient pressure X-ray photoelectron spectroscopy measurements, as well as reactivity studies using bed-packed mass flow reactors. In addition, we employed atomic force microscopy and scanning transmission electron microscopy for structural characterization. Under H 2 activation at 1 bar total pressure, we concluded the formation of metallic Ni, starting for Ni 3 Ga 1 at 300 °C, and for Ni 5 Ga 3 at 400 °C. At higher temperatures, the formation of NiGa alloys follows. The α'-Ni 3 Ga 1 alloy phase is predominantly formed for the Ni 3 Ga 1 NPs, while the coexistence of α'-Ni 3 Ga 1 , δ-Ni 5 Ga 3 and Ga 2 O 3 phases is observed for the Ni 5 Ga 3 NPs after the H 2 activation. The formation of the Ga 2 O 3 phase also results in the presence of excess metallic Ni. Under CO 2 hydrogenation reaction conditions, Ga partially oxidizes again to form a Ga 2 O 3 -rich particle shell for both NP compositions, yet, to a larger extent for the Ni 3 Ga 1 NPs, which, in turn, feature a higher amount of excess Ni. We reveal that metallic Ni is responsible for the high selectivity of the Ni 3 Ga 1 NPs towards the production of methane in our catalytic tests. In contrast, the Ni 5 Ga 3 NPs display a strong selectivity toward methanol production (>92%), more than one order of magnitude higher than that for the Ni 3 Ga 1 NPs, which we ascribe to the presence of the δ-Ni 5 Ga 3 phase.

77 NANOSCIENCE AND NANOTECHNOLOGY↗

DOE OSTI2026

From 2D to 4D: a containerized workflow and browser to explore dynamic chromatin architecture

Background Characterizing the physical organization of the genome is essential for understanding long-range gene regulation, chromatin compartmentalization, and epigenetic accessibility. Hi-C experiments generate two-dimensional (2D) genome-wide contact maps of chromatin interactions by capturing the spatial proximity between genomic loci, which reveal interaction frequencies but lack the spatial resolution needed to interpret the three-dimensional (3D) genome structure(s). Emerging evidence suggests that epigenetic regulation is closely linked to 3D genome architecture, and that structural changes over time (4D) drive key biological processes in development, disease, and environmental response. Thus, integrating 3D structure with functional data is critical for a more complete understanding of genome regulation. Previous work, most notably the 4DHiC chromosome modeling framework, has shown that physical multi-dimensional modeling approaches rooted in polymer physics and molecular dynamics can resolve these structures at biologically meaningful resolutions by integrating temporal Hi-C data with physical constraints to uncover dynamic chromosome reorganization. Thus, molecular dynamics simulations, constrained by Hi-C contact matrices, can resolve fine-scale structural changes and reveal functionally significant transitions in chromatin conformation. Results Herein, we present the 4D Genome Browser Workflow (4DGBWorkflow) and the 4D Genome Browser (4DGB). The algorithm is based on the 4DHiC method, and the containerized tool is an end-to-end workflow that can transform, filter, and view 4D epigenomics and chromatin datasets, allowing non-specialists to apply three-dimensional modeling principles to diverse datasets and experimental conditions. The software executes on a laptop running macOS, Linux or Windows. From input Hi-C files (.hic), the 4DGBWorkflow produces 3D reconstructions of chromosomes, integrates the reconstruction with track data (e.g., epigenetic marks, transcriptome profiles), and provides comparative visualization of the results in a single workflow. Conclusions The 4DGBWorkflow and 4D Genome Browser are open-source tools for comparative analysis and visualization of 4D chromosome datasets, including chromatin architecture and epigenomic signals. Automatic integration of Hi-C data with molecular dynamics democratizes the construction of time resolved 3D genome structures, simplifying complex simulations and data integration schemes.

3D Genome Browser↗

DOE OSTI2024

Latest Three-Flavor Neutrino Oscillation Results from NOvA

NOvA, is a two-detector, long-baseline neutrino oscillation experiment located at Fermilab, Batavia, IL, USA. It aims to constrain neutrino oscillation parameters by analyzing $\nu_\mu (\bar{\nu}_\mu)$ disappearance and $\nu_e (\bar{\nu}_e)$ appearance data. The experiment uses the Neutrinos at Main Injector (NuMI) beamline at Fermilab, which delivers a high-purity 900 KW beam of neutrinos and anti-neutrinos. The detectors are functionally identical finely granulated liquid tracking calorimeters, both situated 14.6 mrad off-axis to the beam direction. The NOvA Near Detector (ND), situated 100 meters underground and 1 kilometer from the beam source, detects the un-oscillated $\nu_\mu (\bar{\nu}_\mu)$ and beam $\nu_e (\bar{\nu}_e)$ events. The Far Detector (FD), located in Ash River, MN, USA, 809 kilometers from the ND, records the oscillated $\nu_e (\bar{\nu}_e)$ and the un-oscillated $\nu_\mu (\bar{\nu}_\mu)$ events. NOvA employs an extrapolation technique to predict the expected events at the Far Detector based on the Near Detector data, thereby providing a significant constraint on systematic uncertainties in the oscillation analyses. As NOvA accumulates more data, controlling these systematic uncertainties becomes increasingly important. This talk will detail the NOvA neutrino oscillation analysis framework and its approach to minimizing dominant systematic uncertainties using Near Detector data. The latest three flavor neutrino oscillation results based on a neutrino-beam exposure of $26.60 \times 10^{20}$ POT and an anti-neutrino beam exposure of $12.50\times 10^{20}$ POT and a novel low energy $\nu_e$ sample, will also be presented.

Choudhary, Brajesh↗

NASA NTRS1978

Detection of gravitational radiation and oscillations of the sun via Doppler tracking of spacecraft

The magnitude of Doppler signals produced by gravitational wave burst, continuous gravitational waves, and oscillations of the sun interacting with a spacecraft are considered. Expressions are worked out for the appropriate noise entering each measurement. The noise sources considered are the Doppler extractor, fluctuations in the solar wind and the troposphere, and fluctuations in the reference oscillator.

Douglas, D. H.↗

NASA NTRS1978

Ionospheric Doppler sounder as remote sensing for detection and prediction of severe storms

Atmospheric acoustic-gravity waves associated with severe storms are detected by a ground-based ionospheric sounding array, and the location of the severe storms responsible for the wave generation is determined by group ray path computation. Computations based on six events during the extreme tornado outbreak of April 3, 1974, and five single tornado events show that the wave sources are located near the location where tornadoes touchdown more than one hour later. In the hurricane case, the results indicate that waves were generated along the storm track more than 3 hours ahead of the actual location of the storm. The possibility of the development of the present system as a remote sensor for the detection and prediction of severe storms is discussed.

Hung, R. J.↗

NASA NTRS1986

Results from 1984 airborne Doppler lidar wind measurements

Observations made with the revised Airborne Doppler Lidar System (ADLS) during research flights in the summer of 1984 are described. The functioning of the ADLS system is described. The research flights measured the flow around Mt. Shasta about 3 km above the surrounding terrain as well as the flow in the area of the Carquenez Strait in the Sacramento River Valley. The flight tracks are described and the resulting scan radial velocities are shown and discussed. The results demonstrate the success of the modifications made in order to correct major error sources present in the 1981 flights of the ADLS system.

Rothermel, Jeffry↗

NASA NTRS1989

Determination of Earth orientation using the Global Positioning System

Modern spacecraft tracking and navigation require highly accurate Earth-orientation parameters. For near-real-time applications, errors in these quantities and their extrapolated values are a significant error source. A globally distributed network of high-precision receivers observing the full Global Positioning System (GPS) configuration of 18 or more satellites may be an efficient and economical method for the rapid determination of short-term variations in Earth orientation. A covariance analysis using the JPL Orbit Analysis and Simulation Software (OASIS) was performed to evaluate the errors associated with GPS measurements of Earth orientation. These GPS measurements appear to be highly competitive with those from other techniques and can potentially yield frequent and reliable centimeter-level Earth-orientation information while simultaneously allowing the oversubscribed Deep Space Network (DSN) antennas to be used more for direct project support.

Freedman, A. P.↗

NASA NTRS1993

Cosmological gamma-ray burst model

A cosmological gamma-ray burst model that reproduces the observed gamma-ray spectra was developed. This model, which is an outgrowth of work on synchrotron emission from cosmological sources, creates the observed spectra from a power law spectrum through Compton attenuation in dense molecular clouds. It restricts the burst source to the centers of galaxies, and it is easily tested through comparisons with time dependent burst spectra. Dr. Brainerd continued development of a Monte Carlo code that tracks the random walk of a gamma-ray through a plasma in a strong magnetic field and used this code to show that a two temperature plasma in a strong magnetic field can suppress soft x-ray emission.

Brainerd, J. J.↗

NASA NTRS1998

NASA Hitchhiker Program Customer Payload Requirements (CPR)

The mission objective is to demonstrate each of the three types of technology intended for future small-satellite communications system design. Each experiment in the overall package is designed to exercise a different technology objective that may be found in the overall satellite communications and telemetry system design. The data communications through TORSS portion is designed to demonstrate that low-power communications systems with non-gimbaled antenna systems can transport significant quantities of data through TDRSS to the ground based on only transmitting through a TDRS when the experiment is near the TDRS subsatellite point. The remaining time. the payload communications system is not active. The demand access experiment is to demonstrate that the request for a demand access service can be transmitted through TDRS and received and decoded at the ground station. In this mode, the TDRS does not track the experiment but signal processing components at the White Sands Complex are used to detect and track the transmitted request. The laser communications experiment is designed to demonstrate passive transmission of telemetry data from the experiment. This mode uses a ground-based laser source to illuminate the experiment and modulate the beam with the data. Ground-based reception recovers the data from the reflected beam back to the ground station.

Horan, Stephen↗

NASA NTRS2009

A Comprehensive Characterization of Microorganisms and Allergens in Spacecraft Environment

The determination of risk from infectious disease during long-duration missions is composed of several factors including the concentration and the characteristics of the infectious agent. Thus, a thorough knowledge of the microorganisms aboard spacecraft is essential in mitigating infectious disease risk to the crew. While stringent steps are taken to minimize the transfer of potential pathogens to spacecraft, several medically significant organisms have been isolated from both the Mir and International Space Station (ISS). Historically, the method for isolation and identification of microorganisms from spacecraft environmental samples depended upon their growth on culture media. Unfortunately, only a fraction of the organisms may grow on a culture medium, potentially omitting those microorganisms whose nutritional and physical requirements for growth are not met. Thus, several pathogens may not have been detected, such as Legionella pneumophila, the etiological agent of Legionnaire s disease. We hypothesize that environmental analysis using non-culture-based technologies will reveal microorganisms, allergens, and microbial toxins not previously reported in spacecraft, allowing for a more complete health assessment. The development of techniques for this flight experiment, operationally named SWAB, has already provided advances in NASA laboratory processes and beneficial information toward human health risk assessment. The translation of 16S ribosomal DNA sequencing for the identification of bacteria from the SWAB experiment to nominal operations has increased bacterial speciation of environmental isolates from previous flights three fold compared to previous conventional methodology. The incorporation of molecular-based DNA fingerprinting using repetitive sequence-based polymerase chain reaction (rep-PCR) into the capabilities of the laboratory has provided a methodology to track microorganisms between crewmembers and their environment. Both 16S ribosomal DNA identification and bacterial fingerprinting have improved NASA s capability to better understand spacecraft environments and determine the source of contamination events. Preflight sampling has been completed for air, surface, and water samples. In-flight sample collection has been completed for a total of 8 air and surface sample collection sessions. In-flight hardware has performed well and the surface sampling device received positive feedback from the crew for its ease of use. While processing and analysis continue for these samples, early results have begun to provide information on the spacecraft environment. Using a method called Denaturing Gradient Gel Electrophoresis (DGGE), several air and samples were evaluated to determine the types of organisms that were present. Using only molecular techniques, DGGE does not depend on any microbial growth on culture media, allowing a more comprehensive assessment of the spacecraft interior. Preliminary results have identified several microorganisms that would not have been isolated using current technology, though none of these organisms would be considered medically significant. Interestingly, the isolation of Gram negative organisms is greater using DGGE than conventional media based isolation. The cause of this finding is unclear, though it may be the result of the technique s ability to isolate both viable and non-viable bacteria. The next phase of the SWAB sample analysis is the use of quantitative polymerase chain reaction (QPCR) to look for specific medically significant organisms. While not as broad as DGGE, QPCR is much more sensitive and may reveal findings that were not seen during the initial evaluation. Together, this information will lead toward an accurate microbial risk assessment to help set flight requirements to protect the safety, health, and performance of the crew.

Castro, V.A.↗

NASA NTRSDate not supplied

Comparison of In-situ Near Infrared Melt Pool Imagery to Optical Microscopy Measurements

Additive manufacturing (AM) is a rapidly growing technology. An area of major importance is the integrity and repeatability of AM parts. The goal is to reduce obstacles to certify AM built parts to allow for use in critical aerospace applications. In-situ nondestructive evaluation sensors can be used for build assessment and can potentially play a key role in certifying AM parts. For example, melt pool features are understood to have a strong correlation to microstructural defects and the use of a near infrared (NIR) camera can be used to record the melt pool, cooling areas, and temperature gradients during the build. This work explores the use of a low cost NIR camera to obtain single line track imagery of the Ti-6Al-4V melt pools for various processing parameters. The NIR camera is radiometrically calibrated and configured in-line with the laser source to obtain high resolution imagery of the melt pool shape and dynamics. The challenge to measure melt pool shapes is to identify the transition points between the metal solid to liquid phase. Factors for melt pool measurements such as thermal camera pixel resolution, surface emissivity, and blurring due to the laser beam movement are discussed. Lastly, the melt pool imagery are compared to optical microscopy measurements for validation.

additive manufacturing↗