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At least 1,009 records · Page 56

WE-AB-303-05: Breathing Motion of Liver Segments From Fiducial Tracking During Robotic Radiosurgery and Comparison with 4D-CT-Derived Fiducial Motion

Purpose: To quantify respiratory-induced motion of liver segments using the positions of implanted fiducials during robotic radiosurgery. This study also compared fiducial motion derived from four-dimensional computed tomography (4D-CT) maximum intensity projections (MIP) with motion derived from imaging during treatment. Methods: Forty-two consecutive liver patients treated with liver ablative radiotherapy were accrued to an ethics approved retrospective study. The liver segment in which each fiducial resided was identified. Fiducial positions throughout each treatment fraction were determined using orthogonal kilovoltage images. Any data due to patient repositioning or motion was removed. Mean fiducial positions were calculated. Fiducial positions beyond two standard deviations of the mean were discarded and remaining positions were fit to a line segment using least squares minimization (LSM). For eight patients, fiducial motion was derived from 4D-CT MIPs by calculating the CT number weighted mean position of the fiducial on each slice and fitting a line segment to these points using LSM. Treatment derived fiducial trajectories were corrected for patient rotation and compared to MIP derived trajectories. Results: The mean total magnitude of fiducial motion across all liver segments in left-right, anteroposterior, and superoinferior (SI) directions were 3.0 ± 0.2 mm, 9.3 ± 0.4 mm, and 20.5 ± 0.5 mm, respectively. Differences in per-segment mean fiducial motion were found with SI motion ranging from 12.6 ± 0.8 mm to 22.6 ± 0.9 mm for segments 3 and 8, respectively. Large, varied differences between treatment and MIP derived motion at simulation were found with the mean difference for SI motion being 2.6 mm (10.8 mm standard deviation). Conclusion: The magnitude of liver fiducial motion was found to differ by liver segment. MIP derived liver fiducial motion differed from motion observed during treatment, implying that 4D-CTs may not accurately capture the range of liver motion across fractions and during treatment. Author V. Nair was funded by the Cushing estate for a SABR clinical research fellowship.

60 APPLIED LIFE SCIENCES↗

Experimental energy levels and partition function of the {sup 12}C{sub 2} molecule

The carbon dimer, the {sup 12}C{sub 2} molecule, is ubiquitous in astronomical environments. Experimental-quality rovibronic energy levels are reported for {sup 12}C{sub 2}, based on rovibronic transitions measured for and among its singlet, triplet, and quintet electronic states, reported in 42 publications. The determination utilizes the Measured Active Rotational-Vibrational Energy Levels (MARVEL) technique. The 23,343 transitions measured experimentally and validated within this study determine 5699 rovibronic energy levels, 1325, 4309, and 65 levels for the singlet, triplet, and quintet states investigated, respectively. The MARVEL analysis provides rovibronic energies for six singlet, six triplet, and two quintet electronic states. For example, the lowest measurable energy level of the a{sup 3}Π{sub u} state, corresponding to the J = 2 total angular momentum quantum number and the F {sub 1} spin-multiplet component, is 603.817(5) cm{sup −1}. This well-determined energy difference should facilitate observations of singlet–triplet intercombination lines, which are thought to occur in the interstellar medium and comets. The large number of highly accurate and clearly labeled transitions that can be derived by combining MARVEL energy levels with computed temperature-dependent intensities should help a number of astrophysical observations as well as corresponding laboratory measurements. The experimental rovibronic energy levels, augmented, where needed, with ab initio variational ones based on empirically adjusted and spin–orbit coupled potential energy curves obtained using the Duo code, are used to obtain a highly accurate partition function, and related thermodynamic data, for {sup 12}C{sub 2} up to 4000 K.

79 ASTRONOMY AND ASTROPHYSICS↗

Calculation of multiple scattered radiation in clean atmospheres

Calculations of the multiple-scattered solar radiation in the earth's atmosphere are compared with telephotometer measurements of the sky intensity obtained during the EPA-sponsored Visibility Impairment by Sulfate Transport and Transformation in the Atmosphere experiment. The doubling and adding calculation technique, in which the reflection and transmission properties of the atmosphere are computed by initially calculating such properties for the case of very thin layers and then adding adjacent layers together, is described and compared with data for two cloudless sky conditions. The first is typical of clean tropospheric conditions, and the second represents an ultraclean atmosphere in which surface aerosol scattering is much lower than molecular scattering. Good agreement is found between the computations and the measurement data.

Bergstrom, R. W.↗

The 27-28 October 1986 FIRE IFO Cirrus Case Study: Cirrus Parameter Relationships Derived from Satellite and Lidar Data

Cirrus cloud radiative and physical characteristics are determined using a combination of ground-based, aircraft, and satellite measurements taken as part of the FIRE Cirrus Intensive Field Observations (IFO) during October and November 1986. Lidar backscatter data are used with rawinsonde data to define cloud base, center, and top heights and the corresponding temperatures. Coincident GOES 4-km visible (0.65 micro-m) and 8-km infrared window (11.5 micro-m) radiances are analyzed to determine cloud emittances and reflectances. Infrared optical depth is computed from the emittance results. Visible optical depth is derived from reflectance using a theoretical ice crystal scattering model and an empirical bidirectional reflectance model. No clouds with visible optical depths greater than 5 or infrared optical depths less than 0.1 were used in the analysis. Average cloud thickness ranged from 0.5 km to 8.0 km for the 71 scenes. Mean vertical beam emittances derived from cloud-center temperatures were 0.62 for all scenes compared to 0.33 for the case study (27-28 October) reflecting the thinner clouds observed for the latter scenes. Relationships between cloud emittance, extinction coefficients, and temperature for the case study are very similar to those derived from earlier surface- based studies. The thicker clouds seen during the other IFO days yield different results. Emittances derived using cloud-top temperature were ratioed to those determined from cloud-center temperature. A nearly linear relationship between these ratios and cloud-center temperature holds promise for determining actual cloud-top temperatures and cloud thicknesses from visible and infrared radiance pairs. The mean ratio of the visible scattering optical depth to the infrared absorption optical depth was 2.13 for these data. This scattering efficiency ratio shows a significant dependence on cloud temperature. Values of mean scattering efficiency as high as 2.6 suggest the presence of small ice particles at temperatures below 230 K. The parameterization of visible reflectance in terms of cloud optical depth and clear-sky reflectance shows promise as a simplified method for interpreting visible satellite data reflected from cirrus clouds. Large uncertainties in the optical parameters due to cloud reflectance anisotropy and shading were found by analyzing data for various solar zenith angles and for simultaneous AVHRR data. Inhomogeneities in the cloud fields result in uneven cloud shading that apparently causes the occurrence of anomalously dark, cloudy pixels in the GOES data. These shading effects complicate the interpretation of the satellite data. The results highlight the need for additional study of cirrus cloud scattering processes and remote sensing techniques.

Minnis, Patrick↗

Provenance Challenges for Earth Science Dataset Publication

Modern science is increasingly dependent on computational analysis of very large data sets. Organizing, referencing, publishing those data has become a complex problem. Published research that depends on such data often fails to cite the data in sufficient detail to allow an independent scientist to reproduce the original experiments and analyses. This paper explores some of the challenges related to data identification, equivalence and reproducibility in the domain of data intensive scientific processing. It will use the example of Earth Science satellite data, but the challenges also apply to other domains.

Tilmes, Curt↗

The role of driver head pose dynamics and instantaneous driving in safety critical events: Application of computer vision in naturalistic driving

This paper investigates the role of driver behavior especially head pose dynamics in safety–critical events (SCEs). Using a large dataset collected in a naturalistic driving study, this paper analyzes the head pose dynamics and driving behavior in moments leading up to crashes or near-crashes. The study uses advanced computer vision and mixed logit modeling techniques to identify patterns and relationships between drivers’ head pose dynamics and crash involvement. The results suggest that driver-head pose dynamics, especially poses that indicate distraction and movement volatility, are important factors that can contribute to undesirable safety outcomes. Marginal effects show that angular deviation for head pose dynamics indicated by yaw, pitch and roll increase the likelihood of crash intensity by 4.56%, 4.92% and 8.26% respectively. Furthermore, traffic flow and lane changing also contribute to increase in likelihood of crash intensity. These findings provide new insights into pre-crash factors, especially human factors and safety–critical events. The study highlights the importance of considering human factors in designing driver assistance systems and developing safer vehicles. This research contributes by examining naturalistic driving data at the microscopic level with early detection of behaviors that lead to SCEs and provides a basis for future research on automation.

33 ADVANCED PROPULSION SYSTEMS↗

Inverse design of hypoeutectoid pearlite steel microstructures using a deep learning and genetic algorithm optimization framework

Goal-oriented microstructure design in metallic materials is a challenging task due to complex structure-property relationships. Traditional experimental and computational approaches are time-intensive and economically inefficient, limiting their applicability for large-scale design space exploration. Here, in this work, we propose an end-to-end framework that integrates deep learning models with genetic optimization to design microstructures with targeted mechanical properties. Deep learning models enable accurate forward design, while their integration with genetic optimization enables efficient inverse design within a few hours, compared to days or weeks using conventional finite element simulations. The framework combines experimental characterization and finite element modeling to analyze the influence of microstructural features on the mechanical behavior of hypoeutectoid steels. Data from both experiments and simulations are used to train the deep learning models. To demonstrate its effectiveness, we apply the framework to 0.63% carbon steel with proeutectoid ferrite and pearlite phases, commonly used in industrial applications. In this study, 2D microstructures were used for modeling, selected primarily for computational efficiency and to establish proof of concept. The framework successfully optimizes microstructures for targeted yield strength, ultimate strength, and stress concentration factors while significantly reducing computational time. Beyond hypoeutectoid steels, this scalable framework can be extended to other material systems and integrated with additive manufacturing, offering an efficient approach for accelerating microstructure design for specific engineering applications.

ConvLSTM↗

Multi-scale models of whole cells: progress and challenges

Whole-cell modeling is “the ultimate goal” of computational systems biology and “a grand challenge for 21st century”. These complex, highly detailed models account for the activity of every molecule in a cell and serve as comprehensive knowledgebases for the modeled system. Their scope and utility far surpass those of other systems models. In fact, whole-cell models (WCMs) are an amalgam of several types of “system” models. The models are simulated using a hybrid modeling method where the appropriate mathematical methods for each biological process are used to simulate their behavior. Given the complexity of the models, the process of developing and curating these models is labor-intensive and to date only a handful of these models have been developed. While whole-cell models provide valuable and novel biological insights, and to date have identified some novel biological phenomena, their most important contribution has been to highlight the discrepancy between available data and observations that are used for the parametrization and validation of complex biological models. Another realization has been that current whole-cell modeling simulators are slow and to run models that mimic more complex (e.g., multi-cellular) biosystems, those need to be executed in an accelerated fashion on high-performance computing platforms. In this manuscript, we review the progress of whole-cell modeling to date and discuss some of the ways that they can be improved.

59 BASIC BIOLOGICAL SCIENCES↗

Karhunen-Loeve expansion analysis of uncertainties in cloud microphysical property retrievals

Here, this study proposes a methodology of quantifying uncertainties for cloud retrievals on model resolution to facilitate the comparison with model outputs. Primary component analysis is applied to reduce the dimension of random variables (up to a factor of 50) and reveal the cross correlations in the input data, making large sampling computationally feasible and uncertainty quantification accurate and reliable. Our approach has the capability of parameterizing input uncertainties and attributing the uncertainties in the retrieval output to each individual source, which allows sensitivity analysis of cloud retrieval algorithms and provides directions for improving observation instruments as well as strategies. We applied the method to characterize uncertainties in cloud ice water content (IWC) retrieved from the DOE Atmospheric Radiation Measurement (ARM) programs baseline cloud microphysical retrieval algorithm (MICROBASE). We test it with a selected ice cloud case observed on 9 March 2000 at the ARM Southern Great Plains site during its 2000 cloud intensive observing period. The test results indicate that (1) uncertainties in the output retrieved by MICROBASE are comparable amongst different retrievals; (2) The mean values obtained by our UQ method are closer to the aircraft data with less errors compared to the direct ensemble average; (3) Ice water path (IWP) generally incurred larger uncertainty in optically thin ice clouds and there was more variability in vertical in the retrieved IWC; and (4) Uncertainties in the output are mainly due to the interactions among different modes of ARM radar pro files.

54 ENVIRONMENTAL SCIENCES↗

Machine learning bandgaps of double perovskites

The ability to make rapid and accurate predictions on bandgaps of double perovskites is of much practical interest for a range of applications. While quantum mechanical computations for high-fidelity bandgaps are enormously computation-time intensive and thus impractical in high throughput studies, informatics-based statistical learning approaches can be a promising alternative. Here we demonstrate a systematic feature-engineering approach and a robust learning framework for efficient and accurate predictions of electronic bandgaps of double perovskites. After evaluating a set of more than 1.2 million features, we identify lowest occupied Kohn-Sham levels and elemental electronegativities of the constituent atomic species as the most crucial and relevant predictors. As a result, the developed models are validated and tested using the best practices of data science and further analyzed to rationalize their prediction performance.

36 MATERIALS SCIENCE↗

MO-AB-BRA-03: Calorimetry-Based Absorbed Dose to Water Measurements Using Interferometry

Purpose: Interferometry-based calorimetry is a novel technique to measure radiation-induced temperature changes allowing the measurement of absorbed dose to water (ADW). There are no mechanical components in the field. This technique also has the possibility of obtaining 2D dose distributions. The goal of this investigation is to calorimetrically-measure doses between 2.5 and 5 Gy over a single projection in a photon beam using interferometry and compare the results with doses calculated using the TG-51 linac calibration. Methods: ADW was determined by measuring radiation-induced phase shifts (PSs) of light passing through water irradiated with a 6 MV photon beam. A 9×9×9 cm{sup 3} glass phantom filled with water and placed in an arm of a Michelson interferometer was irradiated with 300, 400, 500 and 600 monitor units. The whole system was thermally insulated to achieve sufficient passive temperature control. The depth of measurement was 4.5 cm with a field size of 7×7 cm{sup 2}. The intensity of the fringe pattern was monitored with a photodiode and used to calculate the time-dependent PS curve. Data was acquired 60 s before and after the irradiation. The radiation-induced PS was calculated by taking the difference in the pre- and post-irradiation drifts extrapolated to the midpoint of the irradiation. Results were compared to computed doses. Results: Average comparison of calculated ADW values with interferometry-measured values showed an agreement to within 9.5%. k=1 uncertainties were 4.3% for calculations and 14.7% for measurements. The dominant source of uncertainty for the measurements was a temperature drift of about 30 µK/s caused by heat conduction from the interferometer’s surroundings. Conclusion: This work presented the first absolute ADW measurements using interferometry in the dose range of linac-based radiotherapy. Future work to improve measurements’ reproducibility includes the implementation of active thermal control techniques.

60 APPLIED LIFE SCIENCES↗

SU-F-T-394: Impact of PTV Margins With Taking Into Account Shape Variation On IMRT Plans For Prostate Cancer

Purpose: The purpose of this study was to investigate the impact of planning target volume (PTV) margins with taking into consideration clinical target volume (CTV) shape variations on treatment plans of intensity modulated radiation therapy (IMRT) for prostate cancer. Methods: The systematic errors and the random errors for patient setup errors in right-left (RL), anterior-posterior (AP), and superior-inferior (SI) directions were obtained from data of 20 patients, and those for CTV shape variations were calculated from 10 patients, who were weekly scanned using cone beam computed tomography (CBCT). The setup error was defined as the difference in prostate centers between planning CT and CBCT images after bone-based registrations. CTV shape variations of high, intermediate and low risk CTVs were calculated for each patient from variances of interfractional shape variations on each vertex of three-dimensional CTV point distributions, which were manually obtained from CTV contours on the CBCT images. PTV margins were calculated using the setup errors with and without CTV shape variations for each risk CTV. Six treatment plans were retrospectively made by using the PTV margins with and without CTV shape variations for the three risk CTVs of 5 test patients. Furthermore, the treatment plans were applied to CBCT images for investigating the impact of shape variations on PTV margins. Results: The percentages of population to cover with the PTV, which satisfies the CTV D98 of 95%, with and without the shape variations were 89.7% and 74.4% for high risk, 89.7% and 76.9% for intermediate risk, 84.6% and 76.9% for low risk, respectively. Conclusion: PTV margins taking into account CTV shape variation provide significant improvement of applicable percentage of population (P < 0.05). This study suggested that CTV shape variation should be taken consideration into determination of the PTV margins.

60 APPLIED LIFE SCIENCES↗

Diagnosis of vertical motions from VAS retrievals during a convective outbreak

GOES-VAS satellite retrievals are used to investigate an intense convective outbreak over the Mississippi River Valley on 21-22 July 1982. The primary goals are to assess the strengths and weaknesses of three methods for computing vertical motion using satellite retrievals and to determine the effects of short interval observations on the calculations. Then, the vertical motions are incorporated with thermodynamic parameters to assess the usefulness of VAS data in delineating factors leading to storm formation. Results indicate that the quasi-geotrophic omega equation provided patterns and magnitudes most consistent with observed weather events and the 12 h radiosonde-derived motions. The vorticity method generally produced reasonable patterns, especially over the convective outbreak, although magnitudes were large due to its time derivative.

Funk, T. W.↗

An Isolated Circular Synthetic Jet in Cross-Flow at Low Momentum-Flux Ratio

A joint experimental and computational investigation was carried out for a round synthetic jet issuing normal to a turbulent boundary layer at a momentum-flux ratio of one. Distributions of velocity and turbulence intensity were measured by hot-wire anemometry. Numerical results were obtained using unsteady Reynolds-averaged Navier-Stokes (URANS) computations. Time and phase-averaged flow properties were compared on the cross sectional plane at x/D = 0.53, 5 and 10 as well as on the axial plane of symmetry. Overall, the numerical results agreed well with the experimental data. CFD predicted a somewhat larger velocity deficit in regions of low-momentum fluid pulled up from the boundary layer. Phase- averaged velocity contours at the plane of symmetry indicated good match between experiments and CFD regarding the size and the position of the periodic flow structure. However, some differences occurred in details such as the shape and inclination of the low-speed flow structure.

Milanovic, Ivana M.↗

The Application of New Optical Meteor Flux Routines to the 2014 May Camelopardalid Outburst

NASA's Meteoroid Environment Office (MEO) is charged with monitoring the meteoroid environment in near-Earth space for the protection of satellites and spacecraft. The MEO has recently established eight wide-field meteor cameras, four cameras each at two separate stations to calculate automated meteor fluxes in the millimeter size range. Each camera consists of a 17 mm focal length Schneider lens on a Watec 902H2 Ultimate CCD video camera, producing a 21.7 x 15.5 degree field of view. This configuration has a limiting meteor magnitude of about +5. One station is located at Marshall Space Flight Center in Huntsville, Alabama and the other is 31.8 kilometers away at a school in Decatur, Alabama. Both single-station and double-station fluxes are calculated every morning using data from the previous night. The flux algorithms employed here differ from others currently in use in that they do not assume a single height for all meteors observed in the common camera volume. In the MEO system, the volume is broken up into a set of height intervals, with the collecting areas determined by the position of the active shower or sporadic source radiant. The flux per height interval is calculated and summed to obtain the total meteor flux. As the mass is also computed from the photometry, a mass flux can also be calculated. First, a weather algorithm indicates if sky conditions are clear enough to calculate fluxes, at which point a limiting magnitude algorithm is employed. The limiting magnitude algorithm performs a fit of stellar magnitudes versus camera intensities. The stellar limiting magnitude is derived from this and converted to a limiting meteor magnitude for the active shower or sporadic source. The fluxes are scaled to an average limiting magnitude throughout the night and zenithal hourly rate (ZHR's) are output daily along with flux values. In addition to this process, results will be presented as applied to the 2014 May Camelopardalid outburst, using data from several different optical systems, which looked at May Camelopardalids in different size ranges.

Blaauw, Rhiannon↗

The Poisson tensor completion non-parametric differential entropy estimator

We introduce the Poisson tensor completion (PTC) estimator, a non-parametric differential entropy estimator. The PTC estimator leverages inter-sample relationships to compute a low-rank Poisson tensor decomposition of the frequency histogram. Our crucial observation is that the histogram bins are an instance of a space partitioning of counts and thus can be identified with a spatial Poisson process. The Poisson tensor decomposition leads to a completion of the intensity measure over all bins—including those containing few to no samples—and leads to our proposed PTC differential entropy estimator. A Poisson tensor decomposition models the underlying distribution of the count data and guarantees non-negative estimated values and so can be safely used directly in entropy estimation. Our estimator is the first tensor-based estimator that exploits the underlying spatial Poisson process related to the histogram explicitly when estimating the probability density with low-rank tensor decompositions for the purpose of tensor completion. Furthermore, we demonstrate that our PTC estimator is a substantial improvement over standard histogram-based estimators for sub-Gaussian probability distributions because of the concentration of norm phenomenon.

42 ENGINEERING↗

Subtropical Jet in Reanalysis Data from STJ_PV

Subtropical jet position from a new method for locating the subtropical jet, called the tropopause gradient method. It is based on the peak gradient in potential temperature along the dynamic tropopause. This data has the identified subtropical jet latitude, level, and intensity across four different reanalysis products (CFSR-2, ERA-Interim, JRA-55, and MERRA-2), at both daily and monthly output frequency.

58 GEOSCIENCES↗

Accelerating Feldman-Cousins on NOvA using NERSC Supercomputers

When fitting to data with low stats and near physical boundaries, extra measures need to be taken to ensure proper statistical coverage. The method NOvA uses is called the Feldman-Cousins procedure, which entails fitting thousands of independent pseudoexperiments to generate acceptance intervals that are then used to correct our fits. The scale required by the Feldman Cousins procedure makes it extremely computationally intensive. In past analyses, it has taken up to several weeks to complete, bottlenecking our final results. Here I present recent work by members of the NOvA experiment and the SciDAC4 collaboration to enable the use of the super-computing facilities at NERSC to process our Feldman-Cousins corrections over 150x faster, allowing us to do more studies, increase the precision of our fits, and produce results quickly.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗