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DOE OSTI2015

Influences of Quantum Mechanically Mixed Electronic and Vibrational Pigment States in 2D Electronic Spectra of Photosynthetic Systems: Strong Electronic Coupling Cases

In 2D electronic spectroscopy studies, long-lived quantum beats have recently been observed in photosynthetic systems, and several theoretical studies have suggested that the beats are produced by quantum mechanically mixed electronic and vibrational states. Concerning the electronic-vibrational quantum mixtures, the impact of protein-induced fluctuations was examined by calculating the 2D electronic spectra of a weakly coupled dimer with the Franck-Condon active vibrational modes in the resonant condition. This analysis demonstrated that quantum mixtures of the vibronic resonance are rather robust under the influence of the fluctuations at cryogenic temperatures, whereas the mixtures are eradicated by the fluctuations at physiological temperatures. However, this conclusion cannot be generalized because the magnitude of the coupling inducing the quantum mixtures is proportional to the inter-pigment electronic coupling. In this paper, we explore the impact of the fluctuations on electronic-vibrational quantum mixtures in a strongly coupled dimer with an off-resonant vibrational mode. Toward this end, we calculate energy transfer dynamics and 2D electronic spectra of a model dimer that corresponds to the most strongly coupled bacteriochlorophyll molecules in the Fenna-Matthews-Olson complex in a numerically accurate manner. The quantum mixtures are found to be robust under the exposure of protein-induced fluctuations at cryogenic temperatures, irrespective of the resonance. At 300 K, however, the quantum mixing is disturbed more strongly by the fluctuations, and therefore, the beats in the 2D spectra become obscure even in a strongly coupled dimer with a resonant vibrational mode. Further, the overall behaviors of the energy transfer dynamics are demonstrated to be dominated by the environment and coupling between the 0 0 vibronic transitions as long as the Huang-Rhys factor of the vibrational mode is small. Finally, the electronic-vibrational quantum mixtures do not necessarily play a significant role in electronic energy transfer dynamics despite contributing to the enhancement of long-lived quantum beating in the 2D spectra.

2D electronic spectra↗

DOE OSTI2012

Model-based Approaches for the Determination of Lipid Bilayer Structure from Small-Angle Neutron and X-ray Scattering Data

Some of our recent work has resulted in the detailed structures of fully hydrated, fluid phase phosphatidylcholine (PC) and phosphatidylglycerol (PG) bilayers. These structures were obtained from the joint refinement of small-angle neutron and X-ray data using the scattering density profile (SDP) models developed by Ku erka et al. (Ku erka et al. 2012; Ku erka et al. 2008). In this review, we first discuss models for the standalone analysis of neutron or X-ray scattering data from bilayers, and assess the strengths and weaknesses inherent in these models. In particular, it is recognized that standalone data do not contain enough information to fully resolve the structure of inherently disordered fluid bilayers, and therefore may not provide a robust determination of bilayer structural parameters, including the much sought after area per lipid. We then discuss the development of matter density-based models (including the SDP model) that allow for the joint refinement of different contrast neutron and X-ray data sets, as well as the implementation of local volume conservation in the unit cell (i.e., ideal packing). Such models provide natural definitions of bilayer thicknesses (most importantly the hydrophobic and Luzzati thicknesses) in terms of Gibbs dividing surfaces, and thus allow for the robust determination of lipid areas through equivalent slab relationships between bilayer thickness and lipid volume. In the final section of this review, we discuss some of the significant findings/features pertaining to structures of PC and PG bilayers as determined from SDP model analyses.

Heberle, Frederick A↗

DOE OSTI2018

Optimized Electromagnetic Fields Levitate Bulk Metallic Materials

The bulk metallic electromagnetic levitation technique has a promising application prospect in condensed physics and materials science. In order to resolve the problem of weak levitation force and the small size of samples, an optimized solution based on finite element analysis (FEA) is developed to seek the best electromagnetic field distribution in the levitation zone. The influence of material properties on the distribution of magnetic flux density, surface pressure, and the Lorentz force were studied by the FEA method with various sample sizes of titanium and copper balls. The levitation capability of cylindrical coil system which consists of a single-layer coil with an inner diameter of 30 mm and the levitated object with a diameter of 20 mm was analyzed. To keep a balance between the turn number and increment efficiency of force, the best number of 7 turns is confirmed. Then, two types of optimized coils were predicted by numerical simulations, and the levitation force is improved drastically. The double-layer coil displays an outstanding levitation capability owing to the strong electromagnetic field generated by multilayer turns. In addition, 5 to 50 g aluminum, titanium, copper, and nickel are levitated by the above three kinds of coils and the levitation capacities are validated from the recorded data of the minimum operating current that can levitate the samples. The experimental results show good agreements with the simulation results, and the minimum current for optimized coils is reduced efficiently.

36 MATERIALS SCIENCE↗

DOE OSTI2020

Ambient and High Pressure CuNiSb 2 : Metal-Ordered and Metal-Disordered NiAs-Type Derivative Pnictides

The mineral Zlatogorite, CuNiSb 2 , was synthesized in the laboratory for the first time by annealing elements at ambient pressure (CuNiSb 2 -AP). Rietveld refinement of synchrotron powder X-ray diffraction data indicates that CuNiSb 2 -AP crystallizes in the NiAs-derived structure ( P 3 m 1, #164) with Cu and Ni ordering. The structure consists of alternate NiSb 6 and CuSb 6 octahedral layers via face-sharing. The formation of such structure instead of metal disordered NiAs-type structure ( P 6 3 / mm c, #194) is validated by the lower energy of the ordered phase by first-principle calculations. Interatomic crystal orbital Hamilton population, electron localization function, and charge density analysis reveal strong Ni-Sb, Cu-Sb, and Cu-Ni bonding and long weak Sb-Sb interactions in CuNiSb 2 -AP. The magnetic measurement indicates that CuNiSb 2 -AP is Pauli paramagnetic. First-principle calculations and experimental electrical resistivity measurements reveal that CuNiSb 2 -AP is a metal. The low Seebeck coefficient and large thermal conductivity suggest that CuNiSb 2 is not a potential thermoelectric material. Single crystals were grown by chemical vapor transport. The high pressure sample (CuNiSb 2 -8 GPa) was prepared by pressing CuNiSb 2 -AP at 700 °C and 8 GPa. However, the structures of single crystal and CuNiSb 2 -8 GPa are best fit with a disordered metal structure in the P 3 m 1 space group, corroborated by transmission electron microscopy.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2016

Interplay of confinement and surface energetics in the interaction of water with a metal–organic framework

Here, the enthalpy of water adsorption (Δh) on the metal–organic framework (MOF) HKUST-1 has been determined directly by calorimetry. The most exothermic value of Δh [–119.4 ± 0.5 kJ/(mol of water)] occurs at zero coverage and perhaps represents water confinement in the smallest (4-Å) cages. An intermediate Δh value of –50.2 ± 1.8 kJ/(mol of water) at higher loading probably corresponds to the binding of water on the available Cu nodes and subsequent filling of the largest (11-Å) pores. The weakest interactions take place in the medium (10-Å) cages, showing weak inclusion of water clusters in a limited hydrophobic environment. By combining ethanol adsorption calorimetry, mathematical analysis of the slope of the water adsorption isotherm, and the differential enthalpy of water adsorption curve, we are able not only to develop an approach to separate energetically multistage guest–host interactions in complex MOF architectures but also to distinguish a sequence of interactions with very similar energetic effects.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2023

Polymerization of Terminal Acetylenes by a Bulky Monophosphine-Palladium Catalyst

A well-defined palladium complex [(tBuXPhos)Pd(Me)(BAr f )] bearing a bulky monophosphine ligand was synthesized and fully characterized. X-ray diffraction analysis shows that the 1,3,5-triisopropylaryl group of the dialkylbiaryl phosphine ligand exhibits a weak η 6 -interaction with the Pd(II) center. This catalyst exhibits excellent functional group tolerance and polymerizes propargyl esters containing benzoyl and acetyl groups, propargyl methyl ether, propargyl alcohol, benzyl acetylene, and phenyl acetylene to yield polymers with M n values in the range of 5–15 kDa with monomodal molecular weight distributions between ca. 1.4 and 2.1.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2011

Hall magnetohydrodynamic reconnection in the plasmoid unstable regime

A set of reduced Hall magnetohydrodynamic (MHD) equations are used to evaluate the stability of large aspect ratio current sheets to the formation of plasmoids (secondary islands). Reconnection is driven by resistivity in this analysis, which occurs at the resistive skin depth d{sub {eta}}{identical_to}S{sub L}{sup -1/2}{radical}(L{nu}{sub A}/{gamma}), where S{sub L} is the Lundquist number, L, the length of the current sheet, {nu}{sub A,} the Alfven speed, and {gamma}, the growth rate. Modifications to a recent resistive MHD analysis [N. F. Loureiro et al., Phys. Plasmas 14, 100703 (2007)] arise when collisions are sufficiently weak that d{sub {eta}} is shorter than the ion skin depth d{sub i}{identical_to}c/{omega}{sub pi}. Secondary islands grow faster in this Hall MHD regime: the maximum growth rate scales as (d{sub i}/L){sup 6/13}S{sub L}{sup 7/13}{nu}{sub A}/L and the number of plasmoids as (d{sub i}/L){sup 1/13}S{sub L}{sup 11/26}, compared to S{sub L}{sup 1/4}{nu}{sub A}/L and S{sup 3/8}, respectively, in resistive MHD.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2013

The source of the threading dislocation in GaSb/GaAs hetero-structures and their propagation mechanism

The misfit and threading dislocations during GaSb epitaxy on GaAs substrate were investigated by weak beam dark field and high angle dark field scanning transmission electron microscopy. The geometric phase analysis and dislocation density tensor analysis were next used to analyze the strain around the threading dislocations and quantify the corresponding Burgers vectors. It is shown that there are three types of threading dislocations (mixed, edge, and pair of mixed types) close to the interface, which originate from the 60 Degree-Sign , Lomer, and 60 Degree-Sign pair misfit dislocations, respectively. During the growth of the epitaxial layer, the edge type as well as the pair of mixed threading dislocations split into two mixed type dislocations for the glide in {l_brace}111{r_brace} planes. Eventually, only mixed type dislocations have been observed at the surface of thick GaSb layers.

36 MATERIALS SCIENCE↗

DOE OSTI2013

Charge symmetry breaking and parity violating electron scattering

I review the effects of charge symmetry breaking CSB on electromagnetic form factors and how that influences extraction of information regarding nucleon strangeness content and the weak mixing angle. It seems that CSB effects are very modest and should not impact the analysis of experiments.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2014

The role of higher-order modes on the electromagnetic whistler-cyclotron wave fluctuations of thermal and non-thermal plasmas

Two fundamental challenging problems of laboratory and astrophysical plasmas are the understanding of the relaxation of a collisionless plasmas with nearly isotropic velocity distribution functions and the resultant state of nearly equipartition energy density with electromagnetic plasma turbulence. Here, we present the results of a study which shows the role that higher-order-modes play in limiting the electromagnetic whistler-like fluctuations in a thermal and non-thermal plasma. Our main results show that for a thermal plasma the magnetic fluctuations are confined by regions that are bounded by the least-damped higher order modes. We further show that the zone where the whistler-cyclotron normal modes merges the electromagnetic fluctuations shifts to longer wavelengths as the β{sub e} increases. This merging zone has been interpreted as the beginning of the region where the whistler-cyclotron waves losses their identity and become heavily damped while merging with the fluctuations. Our results further indicate that in the case of nonthermal plasmas, the higher-order modes do not confine the fluctuations due to the effective higher-temperature effects and the excess of suprathermal plasma particles. The analysis presented here considers the second-order theory of fluctuations and the dispersion relation of weakly transverse fluctuations, with wave vectors parallel to the uniform background magnetic field, in a finite temperature isotropic bi-Maxwellian and Tsallis-kappa-like magnetized electron–proton plasma. Our results indicate that the spontaneously emitted electromagnetic fluctuations are in fact enhanced over these quasi modes suggesting that such modes play an important role in the emission and absorption of electromagnetic fluctuations in thermal or quasi-thermal plasmas.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2014

A comparative study of lock-in-amplifiers and improved duffing chaotic oscillators for the detection and processing of weak signals

The measurement of multiphase flow parameters is of great importance in a wide range of industries. In the measurement of multiphase, the signals from the sensors are extremely weak and often buried in strong background noise. It is thus desirable to develop effective signal processing techniques that can detect the weak signal from the sensor outputs. In this paper, two methods, i.e., lock-in-amplifier (LIA) and improved Duffing chaotic oscillator are compared to detect and process the weak signal. For sinusoidal signal buried in noise, the correlation detection with sinusoidal reference signal is simulated by using LIA. The improved Duffing chaotic oscillator method, which based on the Wigner transformation, can restore the signal waveform and detect the frequency. Two methods are combined to detect and extract the weak signal. Simulation results show the effectiveness and accuracy of the proposed improved method. The comparative analysis shows that the improved Duffing chaotic oscillator method can restrain noise strongly since it is sensitive to initial conditions.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2015

Quantifying charge resonance and multiexciton character in coupled chromophores by charge and spin cumulant analysis

We extend excited-state structural analysis to quantify the charge-resonance and multi-exciton character in wave functions of weakly interacting chromophores such as molecular dimers. The approach employs charge and spin cumulants which describe inter-fragment electronic correlations in molecular complexes. We introduce indexes corresponding to the weights of local, charge resonance, and biexciton (with different spin structure) configurations that can be computed for general wave functions thus allowing one to quantify the character of doubly excited states. The utility of the approach is illustrated by applications to several small dimers, e.g., He-H{sub 2}, (H{sub 2}){sub 2}, and (C{sub 2}H{sub 4}){sub 2}, using full and restricted configuration interaction schemes. In addition, we present calculations for several systems relevant to singlet fission, such as tetracene, 1,6-diphenyl-1,3,5-hexatriene, and 1,3-diphenylisobenzofuran dimers.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2014

Two-component secular gravitational instability in a protoplanetary disk: A possible mechanism for creating ring-like structures

The instability in protoplanetary disks due to gas-dust friction and self-gravity of gas and dust is investigated using linear analysis. In the case where the dust-to-gas ratio is enhanced and turbulence is weak, the instability grows, even in gravitationally stable disks, on a timescale of order 10{sup 4-5} yr at a radius of order 100 AU. If we ignore the dynamical feedback from dust grains in the gas equation of motion, the instability reduces to the so-called ''secular gravitational instability'', which was investigated previously to be an instability of dust in a fixed background gas flow. In this work, we solve the equations of motion for both gas and dust consistently and find that long-wavelength perturbations are stable, in contrast to the secular gravitational instability in the simplified treatment. This may indicate that we should not neglect small terms in the equation of motion if the growth rate is small. The instability is expected to form ring structures in protoplanetary disks. The width of the ring formed at a radius of 100 AU is a few tens of AU. Therefore, the instability is a candidate for the formation mechanism of observed ring-like structures in disks. Another aspect of the instability is the accumulation of dust grains, and hence the instability may play an important role in the formation of planetesimals, rocky protoplanets, and cores of gas giants located at radii ∼100 AU. If these objects survive the dispersal of the gaseous component of the disk, they may be the origin of debris disks.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2016

Dark matter search results from the PICO-60 CF 3 I bubble chamber

New data are reported from the operation of the PICO-60 dark matter detector, a bubble chamber filled with 36.8 kg of CF3I and located in the SNOLAB underground laboratory. PICO-60 is the largest bubble chamber to search for dark matter to date. With an analyzed exposure of 92.8 livedays, PICO-60 exhibits the same excellent background rejection observed in smaller bubble chambers. Alpha decays in PICO-60 exhibit frequency-dependent acoustic calorimetry, similar but not identical to that reported recently in a C3F8 bubble chamber. PICO-60 also observes a large population of unknown background events, exhibiting acoustic, spatial, and timing behaviors inconsistent with those expected from a dark matter signal. These behaviors allow for analysis cuts to remove all background events while retaining 48.2% of the exposure. Stringent limits on weakly interacting massive particles interacting via spin-dependent proton and spin-independent processes are set, and most interpretations of the DAMA/LIBRA modulation signal as dark matter interacting with iodine nuclei are ruled out.

PICO-60↗

DOE OSTI2024

Complex fermiology and electronic structure of antiferromagnet EuSnP

Throughout this work, we studied the electronic structure of a layered antiferromagnetic metal, EuSnP, in the paramagnetic and in the antiferromagnetic phase using angle-resolved photoemission spectroscopy (ARPES) alongside density-functional theory (DFT)-based first-principles calculations. The temperature dependence of the magnetic susceptibility measurements exhibits an antiferromagnetic transition at a Néel temperature of 21 K. Employing high-resolution ARPES, the valence-band structure was measured at several temperatures above and below the Néel temperature, which produced identical spectra independent of temperature. Through analysis of the ARPES results presented here, we attribute the temperature-independent spectra to the weak coupling of the Sn and P conduction electrons with Eu 4⁢ƒ states.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

DOE OSTI2011

Multi-crystal Anomalous Diffraction for Low-resolution Macromolecular Phasing

Multiwavelength anomalous diffraction (MAD) and single-wavelength anomalous diffraction (SAD) are the two most commonly used methods for de novo determination of macromolecular structures. Both methods rely on the accurate extraction of anomalous signals; however, because of factors such as poor intrinsic order, radiation damage, inadequate anomalous scatterers, poor diffraction quality and other noise-causing factors, the anomalous signal from a single crystal is not always good enough for structure solution. In this study, procedures for extracting more accurate anomalous signals by merging data from multiple crystals are devised and tested. SAD phasing tests were made with a relatively large (1456 ordered residues) poorly diffracting (d{sub min} = 3.5 {angstrom}) selenomethionyl protein (20 Se). It is quantified that the anomalous signal, success in substructure determination and accuracy of phases and electron-density maps all improve with an increase in the number of crystals used in merging. Structure solutions are possible when no single crystal can support structural analysis. It is proposed that such multi-crystal strategies may be broadly useful when only weak anomalous signals are available.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2015

Effects of rapid thermal annealing on the properties of HfO{sub 2}/La{sub 2}O{sub 3} nanolaminate films deposited by plasma enhanced atomic layer deposition

In this work, HfO{sub 2}/La{sub 2}O{sub 3} nanolaminate films were deposited on Si substrates by plasma enhanced atomic layer deposition with in situ plasma treatment. Different annealing treatments were adopted to change films structure and performance. The upper HfO{sub 2} layers in HfO{sub 2}/La{sub 2}O{sub 3} nanolaminates were easily crystallized after annealing at 800 °C, while all the La{sub 2}O{sub 3} layers kept amorphous. X-ray photoelectron spectroscopy results indicated that LaO(OH) and La(OH){sub 3} peaks became weak, H{sub 2}O molecules in laminates evaporated during high-temperature annealing. Band diagram analysis showed that valence band offset and band gap widened after 800 °C annealing. Annealing, especially 800 °C annealing, had gentle effect on leakage current, but could obviously change capacitance and permittivity due to tetragonal and cubic phase formed in the HfO{sub 2} film.

36 MATERIALS SCIENCE↗

DOE OSTI2017

Processes of diffusion in a limited ensemble of charged particles in a static magnetic field

The dynamics of a limited ensemble of charged particles in a spatially uniform static magnetic field has been studied analytically and numerically. Calculations have been performed for particles with various masses and charges in a wide range of the parameters of the systems under study. It has been shown that the transverse diffusion coefficient in an ensemble of particles in the magnetic field for weakly nonideal systems is described by the Townsend formula. Analytical estimates have been proposed for the analysis of the effective diffusion radius of the ensemble of particles owing to their thermal motion. The proposed relations have been tested by the numerical simulation of the problem.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗