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At least 1,027 records · Page 57

Unique attributes of cyanobacterial metabolism revealed by improved genome-scale metabolic modeling and essential gene analysis

Significance Genome-scale models of metabolism are important tools for metabolic engineering and production strain development. We present an experimentally validated and manually curated model of metabolism in Synechococcus elongatus PCC 7942 that ( i ) leads to discovery of unique metabolic characteristics, such as the importance of a truncated, linear TCA pathway, ( ii ) highlights poorly understood areas of metabolism as exemplified by knowledge gaps in nucleotide salvage, and ( iii ) accurately quantifies light input and self-shading. We now have a metabolic model that can be used as a basis for metabolic design in S. elongatus .

09 BIOMASS FUELS↗

Accelerating the Lagrangian Particle Tracking in Hydrologic Modeling to Continental-Scale

Unprecedented climate change and anthropogenic activities have induced increasing ecohydrological problems, which have motivated the development of large-scale modeling for solutions. Water age/quality is as important as water quantity for understanding the water cycle. However, current scientific progress in tracking water parcels at large-scale with high spatiotemporal resolutions is far behind that in water balance/quantity owing to the lack of powerful tools. EcoSLIM is a particle tracking model that works with the hydrologic model ParFlow-CLM, which couples surface-subsurface hydrology with land surface processes. Here, we demonstrate a parallel framework to accelerate EcoSLIM to continental-scale on a distributed, multi-GPU platform with CUDA-Aware MPI. In tests from catchment-, to regional-, and then to continental-scale using 25-million to 1.6-billion particles, EcoSLIM shows significant speedup and excellent parallel performance. The parallel framework is portable to atmospheric and oceanic particle tracking models, where parallelization is inadequate and a standard parallel framework is absent. Parallelized EcoSLIM is a promising tool to accelerate our understanding of the terrestrial water cycle and the upscaling of subsurface hydrology to Earth system models.

54 ENVIRONMENTAL SCIENCES↗

Multi-scale mechanical modeling of Al-steel resistance spot welds

A multi-scale finite element modeling approach was developed to study the deformation and fracture behavior of Al-steel resistance spot welds. First, a micro-scale model was applied to simulate the mechanical responses of the intermetallic compound (IMC) layer having various morphologies and thicknesses under tensile and shear loading conditions. Second, the predicted tensile and shear strength of the IMC layer, that varied along the joint interface per the IMC layer morphology and thickness variation, was then introduced into 3D macro-scale models to predict the overall mechanical performance of weld coupons under coach peel, lap shear and cross-tension testing conditions. In conclusion, the numerical predictions agreed reasonably well with the experimental data.

36 MATERIALS SCIENCE↗

Hanford Waste Treatment Plant LAB Facility Stack Effluent Monitoring: Sampling Probe Location Qualification Evaluation

The WTP LAB stack monitor locations were qualified using scale model stacks to mitigate the risk of identifying that sampling locations do not meet the qualification criteria on the full-scale stack. As required by the ANSI/HPS N13.1-1999 standard, the scale model and its sampling location were geometrically similar to the actual stack and the Reynolds numbers for both the actual and model stacks were >10,000. An additional criterion is that the DV of the full-scale stack must be between 1/6 DV and 6 DV of the scale model stack tests. Verification tests of the LAB stacks were performed at normal operating conditions. The maximum 6 DV value from the scale model testing determines the maximum conditions for which the full-scale stack may be operated and remain in compliance with the stack verification criterion. The remaining criteria for the stack verification to be considered valid involve the flow angle and velocity uniformity results. First, the flow angle at the full-scale stack must be = 20°. Second, the velocity uniformity at the full-scale stack must be = 20% COV. Finally, the velocity uniformity results for the actual and scale model stacks must agree within 5% COV. In general, these criteria were met through the full-scale stack tests at the LAB facility. Some specific items for each scale model and full-scale stack comparison should be noted in assessing the validity of the verification tests. The LB-C2 scale model stacks were performed with single fan operations at then-minimum flow conditions. These conditions resulted in DV values that were too low to meet the DV range criterion, and therefore are unable to be used in qualifying single fan operations on the full-scale stack. However, the single fan operations demonstrated COV values for velocity uniformity as well as flow angles that were comparable to the dual-fan operations at high flows. Overall, the test conditions and test results were within the range of acceptable values based on current design flow rates. Single fan operations are expected to only occur infrequently for maintenance needs and is therefore not a planned operating condition at this time. The LB-S1 scale model stacks were performed at three fan combinations, and in each combination, at least one test was performed at the then-minimum flow conditions as well as at then-maximum flow conditions. While the then-minimum flow conditions result in a DV range that is lower than the verification test DV value, and therefore does not meet the criterion, these tests are un-necessary for the verification test acceptance. The normal and maximum flow conditions from the scale model stack tests meet the DV range criterion, and the velocity uniformity test results compare favorably with the full-scale stack results. The LB-S2 scale model stacks were performed at nominally the same maximum flow condition; however, the 6 DV value for Fan A operation was slightly lower than the full-scale stack test DV. The COV values from the scale model stacks were comparable between the Fan A and Fan B results, and the overall test conditions are within the range of acceptable values. The stack verification is therefore considered acceptable for both Fan A and Fan B operations. The verification tests were performed at flows that were appreciably higher than the design conditions, and further elevated flow rates would be beyond the range of acceptable DV. Based on these stack verification test results, the three LAB filtered exhaust stacks meet the qualification criteria provided in the ANSI/HPS N13.1-1999 standard. Further changes to the system configuration or operating conditions that are outside the bounds described in this and the scale model test reports (Glissmeyer, Flaherty, and Piepel (2001), Glissmeyer and Geeting (2013)) may require additional tests and additional analyses to determine compliance with the standard.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Full Navier-Stokes calculations on the installed F/A-18 inlet at a high angle of attack

Major objectives of the NASA High-Alpha Technology Program are the accurate prediction of the internal (inlet) aerodynamics of an aircraft operating at attitudes of up to 60 deg pitch and 10 deg yaw and the calibration of CFD codes for predicting the internal performance of inlets. Numerical results are presented for the three cases of a full-scale model, a 20-percent scale model at design mass flow, and a scale model at reduced mass flow; attention is given to the effects of Reynolds number. All three cases are at 30 deg angle of attack and zero deg yaw. The results thus obtained are helpful to experimentalists in determining some of their instrumentation requirements.

Bruns, James E.↗

Characterization of Uranium Foil Irradiations at the WSU TRIGA Reactor Using a New Reactor Model in Scale

A new reactor model of the Washington State University TRIGA was developed in the SCALE neutron transport code, and its fidelity was verified by comparison to MCNP and available data for several reactor parameters. The model was used to characterize irradiations designed to produce the short-lived actinides 237 U and 239 U, two key isotopes for nuclear forensics. These short-lived actinides, their decay daughters 237Np and 239Pu, and total fissions (via 99 Mo) were measured in irradiated foils at Los Alamos National Laboratory and other labs with good agreement among parent/daughter pairs and among labs. The laboratory-measured isotope ratios were used as a benchmark for the model determination of reaction rates. The flux distribution in the foils was also determined. Finally, using the continuous energy TSUNAMI-3D module of SCALE, a sensitivity/uncertainty analysis was performed to determine the effects on foil reactions caused by other system-wide reactions and by uncertainties in the known cross-sections.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

Synthesis of historical reservoir operations from 1980 to 2020 for the evaluation of reservoir representation in large-scale hydrologic models

Abstract. All the major river systems in the contiguous United States (CONUS) (and many in the world) are impacted by dams, yet reservoir operations remain difficult to quantify and model due to a lack of data. Reservoir operation data are often inaccessible or distributed across many local operating agencies, making the acquisition and processing of data records quite time-consuming. As a result, large-scale models often rely on simple parameterizations for assumed reservoir operations and have a very limited ability to evaluate how well these approaches match actual historical operations. Here, we use the first national dataset of historical reservoir operations in the CONUS domain, ResOpsUS, to analyze reservoir storage trends and operations in more than 600 major reservoirs across the US. Our results show clear regional differences in reservoir operations. In the eastern US, which is dominated by flood control storage, we see storage peaks in the winter months with sharper decreases in the operational range (i.e., the difference between monthly maximum and minimum storage) in the summer. In the more arid western US where storage is predominantly for irrigation, we find that storage peaks during the spring and summer with increases in the operational range during the summer months. The Lower Colorado region is an outlier because its seasonal storage dynamics more closely mirrored those of flood control basins, yet the region is classified as arid, and most reservoirs have irrigation uses. Consistent with previous studies, we show that average annual reservoir storage has decreased over the past 40 years, although our analyses show a much smaller decrease than previous work. The reservoir operation characterizations presented here can be used directly for development or evaluation of reservoir operations and their derived parameters in large-scale models. We also evaluate how well historical operations match common assumptions that are often applied in large-scale reservoir parameterizations. For example, we find that 100 dams have maximum storage values greater than the reported reservoir capacity from the Global Reservoirs and Dams database (GRanD). Finally, we show that operational ranges have been increasing over time in more arid regions and decreasing in more humid regions, pointing to the need for operating policies which are not solely based on static values.

Geology↗

Large-scale atomistic model construction of subbituminous and bituminous coals for solvent extraction simulations with reactive molecular dynamics

Large-scale atomistic models for complex polycyclic aromatic hydrocarbon systems help understand the chemical properties and behaviors of complex feedstocks such as coal or petroleum. However, the development and utilization of large-scale models remain limited due to the difficulty in achieving the varied structural characteristics necessary to capture stochastic nature of these feedstocks. Here we demonstrate a systematic workflow to construct stochastic molecular systems from a broad analytical suite: high-resolution transmission electron microscopy (HRTEM), carbon-13 nuclear magnetic resonance spectroscopy ( 13 C NMR), laser desorption ionization mass spectroscopy (LDI-MS), and elemental analysis. We present a model construction and analysis utility of a new Python-based module. We selected one subbituminous and three high-volatile bituminous coals to construct large-scale models (~40,000 atoms). The constructed models were utilized to examine the affinity for solvent extraction (naphthalene or tetralin) and the effect of structural properties (e.g., aromatic cluster size, functional groups, and cross-linking) in reactive molecular dynamics simulations. Complex chemical reactions were monitored with bond order transitions, intermediates formation, and mass distributions. Reactive molecular dynamics simulations suggest a plausible chemical extraction process and products for the complex fossil feedstocks. The results indicated that radical formations with bond breaking of bridging oxygens and carbons were required at high temperatures to facilitate hydrogeneration and extraction of gas molecules from radical-free molecules. We observed that aliphatic chains of tetralin were easily decomposed and combined with radicals to form small size of molecules with aryl bonding, mainly increasing molecules in the 500–1000 Da, while naphthalene had little impact on chemical extraction process.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Hanford Waste Treatment Plant Effluent Management Facility Stack Effluent Monitoring: Sampling Probe Location Qualification Evaluation

The Hanford Tank Waste Treatment and Immobilization Plant Effluent Management Facility (EMF) stack monitor location was qualified using a combination of scale model stacks to mitigate the risk of identifying that the sampling location does not meet the qualification criteria on the full-scale stack. The LV-S1 scale model stack was used as a baseline, augmented by the LB-S1 and LV-S2 scale model stacks to address the Direct Feed Low Activity Waste Effluent Management Facility Vessel Vent Process (DVP) injection into the main Active Confinement Ventilation (ACV) system duct. As required by the American National Standards Institute/Health Physics Society (ANSI/HPS) N13.1-1999 standard, the scale model and its sampling locations were geometrically similar to the actual stack, and the Reynolds numbers for both the actual and model stacks were >10,000. An additional criterion is that the product of the hydraulic diameter and mean velocity (DV) of the full-scale stack must be between 1/6 DV and 6 DV of the scale model stack tests. The LV-S1, LB-S1, and LV-S2 scale model stack tests have met the criteria of the ANSI/HPS N13.1-1999 standard to demonstrate the stack sampling locations are well mixed. Verification tests of the EMF stack were performed at normal operating conditions. The minimum 1/6 DV value and the maximum 6 DV value from the scale model testing determine the range of stack flow rates for which the full-scale stack may be operated while remaining in compliance with the stack verification criterion. A practical range for the full-scale stack qualification uses the average DV through 6 DV from the scale model tests to compute the corresponding flow rates. Table S1 lists the operating flow rate along with the average and maximum qualified stack flow rate based on the LV-S1 scale model DV values. The operating flow is below the maximum qualified stack flow, which means that the scale model test results are acceptable for stack qualification. The remaining criteria for the stack verification to be considered valid involve the flow angle and velocity uniformity results. First, the flow angle at the full-scale stack must be ≤20°. Second, the velocity uniformity at the full-scale stack must be ≤20% coefficient of variance (COV). Finally, the velocity uniformity results for the actual and scale model stack tests must agree within 5% COV. These criteria were met through the full-scale stack test at the EMF. Flow angle results were <5°; all flow angle results were within the ≤20° criterion. The velocity uniformity results for each test condition ranged between 2.2% COV and 4.3% COV, all of which were within the range of the target % COV values from the scale model tests on the LV-S1, LB-S1, and LV S2 scale models. Based on these stack verification test results, the EMF filtered exhaust stack sampling location meets the qualification criteria provided in the ANSI/HPS N13.1-1999 standard for all planned fan operating configurations. This includes each combination of ACV fans with DVP exhausters. Further changes to the system configuration or operating conditions that are outside the qualified flow rates described in this report may require additional tests or analyses to determine compliance with the standard.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Stick-Fixed Stability and Control Characteristics of the Consolidated Vultee Model 240 Airplane as Estimated from Tests of a 0.092-Scale Powered Model

Estimates of the static stick-fixed stability and control characteristics of the Consolidated Vultee model 240 airplane are presented in this report. The estimates are based on tests of a 0.092-scale powered model in the 10-foot wind tunnel of the Guggenheim Aeronautical Laboratory of the California Institute of Technology. Results of the analysis are evaluated in terms of the Army specifications for stability and control characteristics which are more specific and, in general, equal to or more rigid than the Civil Aeronautics Administration requirements. The stick-fixed stability and control characteristics of the Consolidated Vultee model 240 were found to be satisfactory except for the following: 1) Marginal longitudinal stability in the landing approach (flaps 30 deg, 50% minimum continuous power) with aft center of gravity (31% M.A.C.); 2) Marginal rudder control to hold zero sideslip in a climb after take-off with asymmetric power (flaps 30 deg, left engine inoperative, right engine delivering take-off power) with maximum rudder throw limited to +/- 18 deg; 3) Marginal dihedral effect with flaps 40 deg and engines delivering maximum continuous power.

McCullough, George B.↗

Development and analysis of prognostic equations for mesoscale kinetic energy and mesoscale (subgrid scale) fluxes for large-scale atmospheric models

Generated by landscape discontinuities (e.g., sea breezes) mesoscale circulation processes are not represented in large-scale atmospheric models (e.g., general circulation models), which have an inappropiate grid-scale resolution. With the assumption that atmospheric variables can be separated into large scale, mesoscale, and turbulent scale, a set of prognostic equations applicable in large-scale atmospheric models for momentum, temperature, moisture, and any other gaseous or aerosol material, which includes both mesoscale and turbulent fluxes is developed. Prognostic equations are also developed for these mesoscale fluxes, which indicate a closure problem and, therefore, require a parameterization. For this purpose, the mean mesoscale kinetic energy (MKE) per unit of mass is used, defined as E-tilde = 0.5 (the mean value of u'(sub i exp 2), where u'(sub i) represents the three Cartesian components of a mesoscale circulation (the angle bracket symbol is the grid-scale, horizontal averaging operator in the large-scale model, and a tilde indicates a corresponding large-scale mean value). A prognostic equation is developed for E-tilde, and an analysis of the different terms of this equation indicates that the mesoscale vertical heat flux, the mesoscale pressure correlation, and the interaction between turbulence and mesoscale perturbations are the major terms that affect the time tendency of E-tilde. A-state-of-the-art mesoscale atmospheric model is used to investigate the relationship between MKE, landscape discontinuities (as characterized by the spatial distribution of heat fluxes at the earth's surface), and mesoscale sensible and latent heat fluxes in the atmosphere. MKE is compared with turbulence kinetic energy to illustrate the importance of mesoscale processes as compared to turbulent processes. This analysis emphasizes the potential use of MKE to bridge between landscape discontinuities and mesoscale fluxes and, therefore, to parameterize mesoscale fluxes generated by such subgrid-scale landscape discontinuities in large-scale atmospheric models.

Avissar, Roni↗

Scale-Similar Models for Large-Eddy Simulations

Scale-similar models employ multiple filtering operations to identify the smallest resolved scales, which have been shown to be the most active in the interaction with the unresolved subgrid scales. They do not assume that the principal axes of the strain-rate tensor are aligned with those of the subgrid-scale stress (SGS) tensor, and allow the explicit calculation of the SGS energy. They can provide backscatter in a numerically stable and physically realistic manner, and predict SGS stresses in regions that are well correlated with the locations where large Reynolds stress occurs. In this paper, eddy viscosity and mixed models, which include an eddy-viscosity part as well as a scale-similar contribution, are applied to the simulation of two flows, a high Reynolds number plane channel flow, and a three-dimensional, nonequilibrium flow. The results show that simulations without models or with the Smagorinsky model are unable to predict nonequilibrium effects. Dynamic models provide an improvement of the results: the adjustment of the coefficient results in more accurate prediction of the perturbation from equilibrium. The Lagrangian-ensemble approach [Meneveau et al., J. Fluid Mech. 319, 353 (1996)] is found to be very beneficial. Models that included a scale-similar term and a dissipative one, as well as the Lagrangian ensemble averaging, gave results in the best agreement with the direct simulation and experimental data.

Sarghini, F.↗

Hanford Waste Treatment Plant Effluent Management Facility Stack Effluent Monitoring: Sampling Probe Location Qualification Evaluation

The Hanford Tank Waste Treatment and Immobilization Plant Effluent Management facility (EMF) stack monitor location was qualified using the LV-S1 scale model stack as a baseline, augmented by the LB-S1 and LV-S2 scale model stacks to address the Direct Feed Low Activity Waste Effluent Management Facility Vessel Vent Process (DVP) injection into the main Active Confinement Ventilation (ACV) system duct. As required by the American National Standards Institute/Health Physics Society (ANSI/HPS) N13.1-1999 standard, the scale models and its sampling locations were geometrically similar to the actual stack and the Reynolds numbers for both the actual and model stacks were >10,000. An additional criterion is that the product of the hydraulic diameter and mean velocity (DV) of the full-scale stack must be between 1/6 DV and 6 DV of the scale model stack tests. Verification tests of the EMF stack was performed at normal operating conditions. The minimum 1/6 DV value, along with the maximum 6 DV value from the scale model testing determines the range of stack flow rates for which the full-scale stack may be operated and remain in compliance with the stack verification criterion. Based on the LV-S1 scale model test DV values, the corresponding stack flow rates for the EMF stack are as listed in Table S1. Table S1. Effluent Management Facility Stack Qualified Flow Range. Stack Parameter EM-1 Minimum Qualified Stack Flow (scfm) 781 Maximum Qualified Stack Flow (scfm) 53,432 The remaining criteria for the stack verification to be considered valid involve the flow angle and velocity uniformity results. First, the flow angle at the full-scale stack must be =20°. Second, the velocity uniformity at the full-scale stack must be =20% coefficient of variance (COV). Finally, the velocity uniformity results for the actual and scale model stack tests must agree within 5% COV. These criteria were met through the full-scale stack test at the EMF. Flow angle results were less than 5°; all flow angle results were within the =20° criterion. The velocity uniformity results for each test condition ranged between 2.2% COV and 4.3% COV, which were all within the range of the target % COV values from the scale model tests on the LV-S1, LB-S1, and LV S2 scale models. Based on these stack verification test results, the EMF filtered exhaust stack sampling location meets the qualification criteria provided in the ANSI/HPS N13.1-1999 standard for all fan operating configurations. This includes each combination of ACV fan with the DVP exhausters. Further changes to the system configuration or operating conditions that are outside the qualified flow rates described in this report may require additional tests or analyses to determine compliance with the standard.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Toward the large-eddy simulations of compressible turbulent flows

New subgrid-scale models for the large-eddy simulation of compressible turbulent flows are developed based on the Favre-filtered equations of motion for an ideal gas. A compressible generalization of the linear combination of the Smagorinsky model and scale-similarity model (in terms of Favre-filtered fields) is obtained for the subgrid-scale stress tensor. An analogous thermal linear combination model is also developed for the subgrid-scale heat flux vector. The three dimensionless constants associated with these subgrid-scale models are obtained by correlating with the results of direct numerical simulations of compressible isotropic turbulence performed on a 96 to the third power grid using Fourier collocation methods. Extensive comparisons between the direct and modeled subgrid-scale fields are provided in order to validate the models. Future applications of these compressible subgrid-scale models to the large-eddy simulation of supersonic aerodynamic flows are discussed briefly.

Erlebacher, G.↗

Toward the large-eddy simulation of compressible turbulent flows

New subgrid-scale models for the large-eddy simulation of compressible turbulent flows are developed and tested based on the Favre-filtered equations of motion for an ideal gas. A compressible generalization of the linear combination of the Smagorinsky model and scale-similarity model, in terms of Favre-filtered fields, is obtained for the subgrid-scale stress tensor. An analogous thermal linear combination model is also developed for the subgrid-scale heat flux vector. The two dimensionless constants associated with these subgrid-scale models are obtained by correlating with the results of direct numerical simulations of compressible isotropic turbulence performed on a 96(exp 3) grid using Fourier collocation methods. Extensive comparisons between the direct and modeled subgrid-scale fields are provided in order to validate the models. A large-eddy simulation of the decay of compressible isotropic turbulence (conducted on a coarse 32(exp 3) grid) is shown to yield results that are in excellent agreement with the fine grid direct simulation. Future applications of these compressible subgrid-scale models to the large-eddy simulation of more complex supersonic flows are discussed briefly.

Erlebacher, G.↗

Toward the large-eddy simulation of compressible turbulent flows

New subgrid-scale models for the large-eddy simulation of compressible turbulent flows are developed and tested based on the Favre-filtered equations of motion for an ideal gas. A compressible generalization of the linear combination of the Smagorinsky model and scale-similarity model, in terms of Favre-filtered fields, is obtained for the subgrid-scale stress tensor. An analogous thermal linear combination model is also developed for the subgrid-scale heat flux vector. The two dimensionless constants associated with these subgrid-scale models are obtained by correlating with the results of direct numerical simulations of compressible isotropic turbulence performed on a 96 (exp 3) grid using Fourier collocation methods. Extensive comparisons between the direct and modeled subgrid-scale fields are provided in order to validate the models. A large-eddy simulation of the decay of compressible isotropic turbulence (conducted on a coarse 32(exp 3) grid) is shown to yield results that are in excellent agreement with the fine-grid direct simulation. Future applications of these compressible subgrid-scale models to the large-eddy simulation of more complex supersonic flows are discussed briefly.

Erlebacher, G.↗