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At least 1,027 records · Page 57

Extreme-Scale Algorithms & Software Resilience (EASIR) Architecture-Aware Algorithms for Scalable Performance and Resilience on Heterogeneous Architectures

This project addresses both communication-avoiding algorithms, and reproducible floating-point computation. Communication, i.e. moving data, either between levels of memory or processors over a network, is much more expensive per operation than arithmetic (measured in time or energy), so we seek algorithms that greatly reduce communication. We developed many new algorithms for both dense and sparse, and both direct and iterative linear algebra, attaining new communication lower bounds, and getting large speedups in many cases. We also extended this work in several ways: (1) We minimize writes separately from reads, since writes may be much more expensive than reads on emerging memory technologies, like Flash, sometimes doing asymptotically fewer writes than reads. (2) We extend the lower bounds and optimal algorithms to arbitrary algorithms that may be expressed as perfectly nested loops accessing arrays, where the array subscripts may be arbitrary affine functions of the loop indices (eg A(i), B(i,j+k, k+3*m-7, …) etc.). (3) We extend our communication-avoiding approach to some machine learning algorithms, such as support vector machines. This work has won a number of awards. We also address reproducible floating-point computation. We define reproducibility to mean getting bitwise identical results from multiple runs of the same program, perhaps with different hardware resources or other changes that should ideally not change the answer. Many users depend on reproducibility for debugging or correctness. However, dynamic scheduling of parallel computing resources, combined with nonassociativity of floating point addition, makes attaining reproducibility a challenge even for simple operations like summing a vector of numbers, or more complicated operations like the Basic Linear Algebra Subprograms (BLAS). We describe an algorithm that computes a reproducible sum of floating point numbers, independent of the order of summation. The algorithm depends only on a subset of the IEEE Floating Point Standard 754-2008, uses just 6 words to represent a “reproducible accumulator,” and requires just one read-only pass over the data, or one reduction in parallel. New instructions based on this work are being considered for inclusion in the future IEEE 754-2018 floating-point standard, and new reproducible BLAS are being considered for the next version of the BLAS standard.

97 MATHEMATICS AND COMPUTING↗

Towards Integrating Data Quality Assessments and Radiometer Uncertainty for Determining the Expanded Uncertainty of Three-Component Solar Radiation Measurements

Accurate solar irradiance data are fundamental for determining the design and performance characteristics of photovoltaic systems. The uncertainty of solar irradiance measurements depends on many factors including radiometer design, calibration, installation, maintenance, and operational environment. The key contributors to this uncertainty can be classified as the measurement uncertainty of a particular radiometer and the operational uncertainty determined for the time of measurement. Radiometer measurement uncertainty estimates (U R ) can be based on well-established methods used as part of the radiometer calibration process. Estimates of operational uncertainties (U o ) require consideration of additional site-specific factors that affect data quality. A method is needed for establishing the accuracy of solar irradiance data by integrating an existing data quality process and measurement uncertainty estimates for specific radiometers. An algorithm has been developed to integrate data quality analyses and measurement uncertainty estimates for three-component solar irradiance data: global horizontal (total hemispheric) irradiance, direct normal (beam) irradiance, and diffuse horizontal (sky) irradiance collected at one- to 60-minute intervals. The algorithm has been tested using one-minute irradiance measurements. The goal of the project is to distribute a user-friendly software package based on the new algorithm.

data integrity↗

Evaluating an Eco-Cooperative Automated Control System

The paper evaluates an Eco-Cooperative Automated Control (Eco-CAC) system on a large-scale network considering a combination of internal combustion engine vehicles (ICEVs), hybrid electric vehicles (HEVs), and battery-only electric vehicles (BEVs) in a microscopic traffic simulation environment. We used a novel integrated control system that: (1) routes ICEVs, HEVs, and BEVs in a fuel/energy-efficient manner; (2) selects vehicle speeds based on anticipated traffic network evolution; (3) minimizes vehicle fuel/energy consumption near signalized intersections; and (4) intelligently modulates the longitudinal motion of vehicles along freeways within a cooperative platoon to minimize fuel/energy consumption. The study tested the system using the INTEGRATION software on the Los Angeles (LA), U.S., downtown network for three different demand levels: no congestion, mild congestion, and heavy congestion. The results demonstrated that the Eco-CAC system effectively reduces vehicle fuel and energy consumption, travel time, total delay, and stopped delay in heavily congested conditions. However, different vehicle compositions produced different results. In particular, the maximum energy consumption savings for BEVs (36.9%) for a current vehicle composition occurred at a 10% market penetration rate (MPR) of connected automated vehicles (CAVs) in mild congestion, while the maximum savings for a future vehicle composition (35.5%) occurred at a 50% CAV MPR in no congestion. The system reduced fuel consumption for ICEVs and HEVs by up to 5.4% and 6.3% at a 25% CAV MPR in heavy congestion for current and future vehicle compositions, respectively. However, the system increased total fuel consumption by up to 4.6% at a 50% CAV MPR in no congestion for a current vehicle composition. The study demonstrates that the effectiveness of the Eco-CAC system depends on traffic conditions, including congestion level, network configuration, CAV MPR, and vehicle composition.

Engineering↗

Advanced Offshore Wind Turbine/Foundation Concept for the Great Lakes

This project investigated a conceptual 2-bladed rotor wind turbine design and assessed its feasibility for installation in the Great Lakes. The levelized cost of energy was used for this purpose. A location in Lake Erie near the coast of Cleveland, Ohio was selected as the application site. The loading environment was defined using wind and wave data collected at a weather station in Lake Erie near Cleveland. In addition, the probability distributions of the annual significant wave height and wind speed were determined. A model of the dependence of the above two quantities was also developed and used in the study of wind turbine system loads. Loads from ice floes and ridges were also included.The NREL 5 MW 3-bladed rotor wind turbine concept was used as the baseline design. The proposed turbine design employs variable pitch blade control with tip-brakes and a teeter mechanism. The rotor diameter, rated power and the tower dimensions were selected to closely match those of the NREL 5 MW wind turbine.A semi-floating gravity base foundation was designed for this project primarily to adapt to regional logistical constraints to transport and install the gravity base foundation. This foundation consists of, from bottom to top, a base plate, a buoyancy chamber, a taper zone, a column (with ice cone), and a service platform. A compound upward-downward ice cone was selected to secure the foundation from moving because of ice impact.The turbine loads analysis was based on International ElectroTechnical Committee (IEC) Standard 61400-1, Class III winds. The NREL software FAST was the primary computational tool used in this study to determine all design load cases. An initial set of studies of the dynamics of wind turbines using Automatic Dynamic Analysis of Mechanical Systems (ADAMS) demonstrated that FAST and ADAMS load predictions were comparable. Because of its relative simplicity and short run times, FAST was selected for this study. For ice load calculations, a method was developed and implemented in FAST to extend its capability for ice load modeling.Both upwind and downwind 2-bladed rotor wind turbine designs were developed and studied. The new rotor blade uses a new twist angle distribution design and a new pitch control algorithm compared with the baseline model. The coning and tilt angles were selected for both the upwind and downwind configurations to maximize the annual energy production. The risk of blade-tower impact is greater for the downwind design, particularly under a power grid fault; however, this risk was effectively reduced by adjusting the tilt angle for the downwind configuration.

17 WIND ENERGY↗

SRNL Report on Vendor Solicitation and Selective Ion-Electrode Testing

Effective operation of the Hanford Tank Waste Treatment and Immobilization Plant (WTP) will require information collected from sampling and/or monitoring to maintain environmental compliance, product quality, and operating efficiency. The U.S. Department of Energy (DOE) – Office of River Protection (ORP) recognizes the potential long-term benefit of developing real-time, in-line monitoring (RTIM) at the WTP to improve the current strategy of collecting tens of thousands of samples and analyzing them. In-line monitoring can decrease processing time associated with waiting for sample analysis, reduce workers’ exposure to radiation and chemical hazards, decrease secondary waste volumes, potentially improve product quality, and provide production support and enhance overall operational control. The Assistant Manager, WTP chartered an Integrated Technical Team (ITT), which includes personnel from the Savannah River National Laboratory (SRNL), Bechtel National, Inc., and DOE-ORP, to evaluate the capability and potential benefits of replacing routine sample collection requirements with real-time, in-line monitoring. The initial focus of the ITT is the Direct Feed Low Activity Waste (DFLAW) Program. This work scope is being performed in multiple phases. Phase 1 is Requirements and Opportunities Analysis, Phase 2 is Applications and Benefits Determination, and Phase 3 is Qualification and Demonstration. Phase 1 included 6 tasks and was completed by SRNL in 2017. The tasks in Phase 1 were: (1) determining the functional requirements for determining analytes and properties of streams, (2) determining the technical basis for process control, (3) determining the sampling points within the Low Activity Waste (LAW) facility and Effluent Management Facility (EMF), (4) data quality and management, (5) process control challenges, and (6) preparing a Preliminary Analysis Plan. DOE-ORP was briefed on the findings from the Phase 1 tasks and requested that Phase 2 work focus on establishing a basis for a materials balance approach that minimized process sampling. The Phase 2 work scope contains tasks to evaluate a materials balance only approach as well as continuing scoping evaluations for instruments that could be used for RTIM. The Phase 2 work scope was completed by both SRNL and Pacific Northwest National Laboratory (PNNL). The tasks performed in Phase 2 were: 1. Overall program administration and technical oversight 2. Evaluation of a Material Balance Approach, a. Evaluation of uncertainty of this approach compared to uncertainty of current methods b. Evaluation of automating the material balance within the framework of existing control software, c. Development of the methodology to obtain and evaluate data during cold commissioning to support a material balance approach, and d. Development of a framework to utilize during presentation of the revised approach to stakeholders and regulators. 3. Screening Evaluations of Instruments to Supplement the Material Balance Approach, a. AP-105 melter condensate evaluations, and b. Screening testing with simulants. 4. Evaluation of the current DFLAW feed qualification program to identify analytes that could be eliminated, a. Inorganic analytes, b. Radionuclides, and c. Organic analytes. This report describes the results of Task 3b, Screening testing with simulants. The Savannah River National Laboratory requested demonstrations of commercially available analytical instruments by the vendors or laboratory demonstration. The techniques tested included: Raman spectroscopy, Infrared spectroscopy (IR), laser induced breakdown spectroscopy (LIBS), X-Ray Fluorescence Spectroscopy (XRF), and ion-selective electrochemical probes. Additionally, the instrumentation would need to be durable enough to withstand the environment of the plant, preferably with little to no maintenance. The insertion point of the instrument would be dependent upon the instrumentation.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Ambient occlusion – A powerful algorithm to segment shell and skeletal intrapores in computed tomography data

During the last decades, X-ray (micro-)computed tomography has gained increasing attention for the description of porous skeletal and shell structures of various organism groups. However, their quantitative analysis is often hampered by the difficulty to discriminate cavities and pores within the object from the surrounding region.Herein, we test the ambient occlusion (AO) algorithm and newly implemented optimisations for the segmentation of cavities (implemented in the software Amira). The segmentation accuracy is evaluated as a function of (i) changes in the ray length input variable, and (ii) the usage of AO (scalar) field and other AO-derived (scalar) fields. The results clearly indicate that the AO field itself outperforms all other AO-derived fields in terms of segmentation accuracy and robustness against variations in the ray length input variable. The newly implemented optimisations improved the AO field-based segmentation only slightly, while the segmentations based on the AO-derived fields improved considerably.Additionally, we evaluated the potential of the AO field and AO-derived fields for the separation and classification of cavities as well as skeletal structures by comparing them with commonly used distance-map-based segmentations. For this, we tested the zooid separation within a bryozoan colony, the stereom classification of an ophiuroid tooth, the separation of bioerosion traces within a marble block and the calice (central cavity)-pore separation within a dendrophyllid coral. The obtained results clearly indicate that the ideal input field depends on the three-dimensional morphology of the object of interest The segmentations based on the AO-derived fields often provided cavity separations and skeleton classifications that at were superior to or impossible to obtain with commonly used distance-map-based segmentations. The combined usage of various AO-derived fields by supervisd or unsupervised segmentation algorithms might provide a promising target for future research to further improve the results for this kind of high-end data segmentation and classification. Furthermore, the application of the developed segmentation algorithm is not restricted to X-ray (micro-)computed tomographic data but may potentially be useful for the segmentation of 3D volume data from other sources.

Computed tomography, Micro-computed tomography, Po↗

Gaussian Process Optimization of Sensitivity-Based Similarity Metrics between New Nuclear Applications and New/Existing Benchmarks [Slides]

This presentation discusses Nuclear Criticality Safety (NCS) and how designing safe, new nuclear criticality experiments requires expert judgement, which could take years of experience. Sensitivity/uncertainty (S/U) analysis can be utilized by less experienced individuals to conservatively estimate uncertainties in important parameters, such as k eff , in newly proposed nuclear experiments. The presentation poses the question of how this analysis can be performed and states that the answer lies in matching new nuclear experiments with existing benchmark experiments using similarity metrics. By increasing the criticality safety of the application in this work, higher mass limits could be used in PF-4 operations. Additionally, the presentation discusses MCNP6.2®, Whisper-1.1, the software that can be used in this analysis. Also discussed is the fact that International Criticality Safety Benchmark Evaluation Project (ICSBEP) benchmarks rarely match new nuclear applications and that there are significant differences in given set of materials and/or geometry. If there are no benchmarks that match the application, the presentation discusses the possibility of creating new benchmarks. In conclusion, this work presents a Gaussian process (GP) optimization scheme that was used to generate new benchmarks with the highest sensitivity-based similarity metrics to user-defined nuclear applications. The Gaussian process optimization successfully designed 3 new experimental benchmarks that were highly correlated to the application of interest and had k eff values near critical. Optimization over c k,i-r has shown that investigating specific isotope reactions for different applications is crucial to designing benchmark experiments. Partial contribution from Pu dominates c k similarity metric. Future work includes testing new stand-alone similarity metrics or new combinations of similarity metrics as the design criterion of this optimization – design criterion is application dependent.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Moore vs. Murphy: Tradeoffs between complexity and reliability in distributed energy system scheduling using software-as-a-service

Software-based optimization of building control strategies, including scheduling, has the potential to improve the performance of existing complex heating, ventilation, and air conditioning (HVAC), storage, and other systems—especially if temporally variable energy production, such as solar thermal or photovoltaics, is included. If reductions in energy bills can be achieved using optimized control strategies that take advantage of cost-saving opportunities, such as time-of-use pricing, the additional bill savings can cover further efficiency investment costs. As computer processing becomes cheaper over time (Moore's Law), opportunities to perform complex control optimization become more abundant, and these can be performed remotely as software-as-a-service (SaaS). However, by “perfecting” our control strategies, we run an increased risk that when something unexpected happens (Murphy's Law), the consequences of failure are greater. This study used simulation to explore the potential benefits of HVAC schedule optimization, delivery, and implementation using a SaaS paradigm, at various levels of complexity. Implementing optimal schedules in a model of an efficient building's HVAC system, the study predicts energy cost savings of up to 10% compared to the naïve reference control strategy. Optimizing more system control variables increases the potential energy cost savings; however, these savings could be compromised by failures in communication inherent in delivering schedules via SaaS. The additional cost of energy resulting from the risk of increased demand charges generally increased with increased communication failure to a much larger extent than the risk of increased energy use charges. This work suggests that moderate improvements in performance, achieved at low cost by simple means, may be more effective than highly optimized schemes, which are more susceptible to failure due to their dependence on complex interactions between systems.

42 ENGINEERING↗

SU-E-J-90: MRI-Based Treatment Simulation and Patient Setup for Radiation Therapy of Brain Cancer

Purpose: Traditional radiation therapy of cancer is heavily dependent on CT. CT provides excellent depiction of the bones but lacks good soft tissue contrast, which makes contouring difficult. Often, MRIs are fused with CT to take advantage of its superior soft tissue contrast. Such an approach has drawbacks. It is desirable to perform treatment simulation entirely based on MRI. To achieve MR-based simulation for radiation therapy, bone imaging is an important challenge because of the low MR signal intensity from bone due to its ultra-short T2 and T1, which presents difficulty for both dose calculation and patient setup in terms of digitally reconstructed radiograph (DRR) generation. Current solutions will either require manual bone contouring or multiple MR scans. We present a technique to generate DRR using MRI with an Ultra Short Echo Time (UTE) sequence which is applicable to both OBI and ExacTrac 2D patient setup. Methods: Seven brain cancer patients were scanned at 1.5 Tesla using a radial UTE sequence. The sequence acquires two images at two different echo times. The two images were processed using in-house software. The resultant bone images were subsequently loaded into commercial systems to generate DRRs. Simulation and patient clinical on-board images were used to evaluate 2D patient setup with MRI-DRRs. Results: The majority bones are well visualized in all patients. The fused image of patient CT with the MR bone image demonstrates the accuracy of automatic bone identification using our technique. The generated DRR is of good quality. Accuracy of 2D patient setup by using MRI-DRR is comparable to CT-based 2D patient setup. Conclusion: This study shows the potential of DRR generation with single MR sequence. Further work will be needed on MR sequence development and post-processing procedure to achieve robust MR bone imaging for other human sites in addition to brain.

60 APPLIED LIFE SCIENCES↗

Geomechanical and Fluid Transport Properties

Complex changes to fluid and mechanical properties of a pyrolyzing formation could lead to significant subsidence. Capturing subsidence requires accounting for changes in porosity due to generation and drainage of fluid. Pores, permeability and pore pressure are generated during pyrolysis of kerogen into oil and gas. In a series reaction scheme, oil is an intermediate product of pyrolysis. A large portion of oil-range fluids may be lost in an in-situ operation if the oil produced cannot be drained quickly enough. Petroleum fluid quality and production are highly dependent on the relative rates of creation, destruction, and transport of oil and gas in a given volume. All of these are dependent on the heating rate of oil shale. If oil shale is heated quickly, fluid flow may increase, but at a cost to the amount of oil that is finally extracted. To account for the effect of pore fluid on mechanical deformation, an elastic model was combined with a Mohr-Coulomb failure criterion and Biot’s linear consolidation model. The overall model is poroelastic, because it accounts for rock deforming by considering the response of the bulk system and the pore fluids it contains. Biot’s linear model includes all ways that pore fluid volume can change in a system, including stress-strain interactions between pores and the bulk material. Additionally, the model captures the distinction between fluid and solid matrix compression and describes how bulk deformation is affected by fluid drainage. The fluid response to changing stress is affected by changes in pore pressure, while the bulk material responds to effective stress changes. To capture all of these effects, a number of theoretical and empirical models were employed in FLAC3D™, a rock-mechanics software package produced by Itasca Consulting Group. The basic capabilities of FLAC3D™ have been supplemented by customized algorithms for the simulation package. The most important contribution has been to develop a methodology for describing poro-thermo-mechanical properties of oil shale across the complete chronology of in situ pyrolysis. This report highlights those methods and results for inferring realistic oil shale properties.

04 OIL SHALES AND TAR SANDS↗

Modeling and sensitivity analysis of mass transfer in active multilayer polymeric film for food applications

The barrier performance of multilayer polymeric films for food applications has been significantly improved by incorporating oxygen scavenging materials. The scavenging activity depends on parameters such as diffusion coefficient, solubility, concentration of scavenger loaded and the number of available reactive sites. These parameters influence the barrier performance of the film in different ways. Virtualization of the process is useful to characterize, design and optimize the barrier performance based on physical configuration of the films. Also, the knowledge of values of parameters is important to predict the performances. Inverse modeling and sensitivity analysis are sole way to find reasonable values of poorly defined, unmeasured parameters and to analyze the most influencing parameters. Thus, the objective of this work was to develop a model to predict barrier properties of multilayer film incorporated with reactive layers and to analyze and characterize their performances. Polymeric film based on three layers of Polyethylene terephthalate (PET), with a core reactive layer, at different thickness configurations was considered in the model. A one dimensional diffusion equation with reaction was solved numerically to predict the concentration of oxygen diffused into the polymer taking into account the reactive ability of the core layer. The model was solved using commercial software for different film layer configurations and sensitivity analysis based on inverse modeling was carried out to understand the effect of physical parameters. The results have shown that the use of sensitivity analysis can provide physical understanding of the parameters which highly affect the gas permeation into the film. Solubility and the number of available reactive sites were the factors mainly influencing the barrier performance of three layered polymeric film. Multilayer films slightly modified the steady transport properties in comparison to net PET, giving a small reduction in the permeability and oxygen transfer rate values. Scavenging capacity of the multilayer film increased linearly with the increase of the reactive layer thickness and the oxygen absorption reaction at short times decreased proportionally with the thickness of the external PET layer.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

SU-F-T-51: Investigating the Effect of Eye Size and Eccentricity On Normal Tissue Doses From Eye Plaque Brachytherapy

Purpose: This study investigates the effect of eye size and eccentricity on doses to critical tissues by simulating doses in the Plaque Simulator (v. 6.3.1) software. Present OHSU plaque brachytherapy treatment focuses on delivering radiation to the tumor measured with ocular ultrasound plus a small margin and assumes the orbit has the dimensions of a “standard eye.” Accurately modeling the dimensions of the orbit requires a high resolution ocular CT. This study quantifies how standard differences in equatorial diameters and eccentricity affect calculated doses to critical structures in order to query the justification of the additional CT scan to the treatment planning process. Methods: Tumors of 10 mm × 10 mm × 5 mm were modeled at the 12:00:00 hour with a latitude of 45 degrees. Right eyes were modeled at a number of equatorial diameters from 17.5 to 28 mm for each of the standard non-notched COMS plaques with silastic inserts. The COMS plaques were fully loaded with uniform activity, centered on the tumor, and prescribed to a common tumor dose (85 Gy/100 hours). Variations in the calculated doses to normal structures were examined to see if the changes were significant. Results: The calculated dose to normal structures show a marked dependence on eye geometry. This is exemplified by fovea dose which more than doubled in the smaller eyes and nearly halved in the larger model. Additional significant dependence was found in plaque size on the calculated dose in spite of all plaques giving the same dose to the prescription point. Conclusion: The variation in dose with eye dimension fully justifies the addition of a high resolution ocular CT to the planning technique. Additional attention must be made to plaque size beyond simply covering the tumor when considering normal tissue dose.

60 APPLIED LIFE SCIENCES↗

Dynamic Transmission Line Switching Amid Wildfire-Prone Weather Under Decision-Dependent Uncertainty

During dry and windy seasons, environmental conditions significantly increase the risk of wildfires, exposing power grids to disruptions caused by transmission line failures. Wildfire propagation exacerbates grid vulnerability, potentially leading to prolonged power outages. To address this challenge, we propose a multistage optimization model that dynamically adjusts transmission grid topology in response to wildfire propagation, aiming to develop an optimal response policy. By accounting for decision-dependent uncertainty, where line survival probabilities depend on usage, we employ distributionally robust optimization to model uncertainty in line survival distributions. We adapt the stochastic nested decomposition algorithm and derive a deterministic upper bound for its finite convergence. To enhance computational efficiency, we exploit the Lagrangian dual problem structure for a faster generation of Lagrangian cuts. Using realistic data from the California transmission grid, we demonstrate the superior performance of dynamic response policies against two-stage alternatives through a comprehensive case study. In addition, after solving the multistage formulation, we construct easy-to-implement policies that significantly reduce computational burden while maintaining good performance in real-time deployment. History: Accepted by Russell Bent, Area Editor for Network Optimization: Algorithms and Applications. Funding: This work was supported by the U.S. Department of Energy, Office of Electricity [Grant DE-AC02-05CH11231]. The work of R. Jiang was supported in part by the U.S. National Science Foundation, Division of Electrical, Communications and Cyber Systems [Grant ECCS-1845980] and the U.S. Air Force Office of Scientific Research [Grant FA9550-23-1-0323]. Supplemental Material: The software that supports the findings of this study is available within the paper and its Supplemental Information ( https://pubsonline.informs.org/doi/suppl/10.1287/ijoc.2025.1210 ) as well as from the IJOC GitHub software repository ( https://github.com/INFORMSJoC/2025.1210 ). The complete IJOC Software and Data Repository is available at https://informsjoc.github.io/ .

Estrada-Garcia, Juan-Alberto↗

Red Noise–based False Alarm Thresholds for Astrophysical Periodograms via Whittle’s Approximation to the Likelihood

Astronomers who search for periodic signals using Lomb–Scargle periodograms rely on false alarm level (FAL) estimates to identify statistically significant peaks. Although FALs are often calculated from white noise models, many astronomical time series suffer from red noise. Prewhitening is a statistical technique in which a continuum model is subtracted from the log power spectrum estimate, after which the observer can proceed with a white-noise treatment. Here we present a prewhitening-based method of calculating frequency-dependent FALs. We fit power laws and autoregressive models of order 1 to each Lomb–Scargle periodogram by minimizing the Whittle approximation to the negative log-likelihood (NLL), then calculate FALs based on the best-fit model power spectrum. Our technique is a novel extension of the Whittle NLL to datasets with uneven time sampling. We demonstrate FAL calculations using observations of α Cen B, GJ 581, HD 192310, synthetic data from the radial velocity (RV) fitting challenge, and Kepler observations of a differential rotator. The Kepler data analysis shows that only true rotation signals are detected by red noise FALs, while white noise FALs suggest all spurious peaks in the low-frequency range are significant. A high-frequency sinusoid injected into α Cen B logR$'$ HK observations exceeds the 1% red noise FAL despite having only 8.9% of the power of the dominant rotation signal. In a periodogram of HD 192310 RVs, peaks associated with differential rotation and planets are detected against the 5% red noise FAL without iterative model fitting or subtraction. The software for calculating red noise–based FALs is available on GitHub.

Astrostatistics (1882)↗

SU-F-T-263: Dosimetric Characteristics of the Cine Acquisition Mode of An A-Si EPID

Purpose: To investigate the dosimetric characteristics of Varian a-Si-500 electronic portal imaging device (EPID) operated in cine mode particularly considering linearity with delivered dose, dose rate, field size, phantom thickness, MLC speed and common IMRT fields. Methods: The EPID that attached to a Varian Clinac 21iX linear accelerator, was irradiated with 6 and 18 MV using 600 MU/min. Image acquisition is controlled by the IAS3 software, Trigger delay was 6 ms, BeamOnDelay and FrameStartDelay were zero. Different frame rates were utilized. Cine mode response was calculated using MATLAB as summation of mean pixel values in a region of interest of the acquired images. The performance of cine mode was compared to integrated mode and dose measurements in water using CC13 ionization chamber. Results: Figure1 illustrates that cine mode has nonlinear response for small MU, when delivering 10 MU was about 0.5 and 0.64 for 6 and 18 MV respectively. This is because the missing acquired images that were calculated around four images missing in each delivery. With the increase MU the response became linear and comparable with integrated mode and ionization chamber within 2%. Figure 2 shows that cine mode has comparable response with integrated mode and ionization chamber within 2% with changing dose rate for 10 MU delivered. This indicates that the dose rate change has no effect on nonlinearity of cine mode response. Except nonlinearity, cine mode is well matched to integrated mode response within 2% for field size, phantom thickness, MLC speed dependences. Conclusion: Cine mode has similar dosimetric characteristics to integrated mode with open and IMRT fields, and the main limitation with cine mode is missing images. Therefore, the calibration of EPID images with this mode should be run with large MU, and when IMRT verification field has low MU, the correction for missing images are required.

60 APPLIED LIFE SCIENCES↗

The Cementitious Barriers Partnership (CBP) Software Toolbox Capabilities in Assessing the Degradation of Cementitious Barriers - 13487

The Cementitious Barriers Partnership (CBP) Project is a multi-disciplinary, multi-institutional collaboration supported by the U.S. Department of Energy (US DOE) Office of Tank Waste and Nuclear Materials Management. The CBP program has developed a set of integrated tools (based on state-of-the-art models and leaching test methods) that help improve understanding and predictions of the long-term structural, hydraulic and chemical performance of cementitious barriers used in nuclear applications. Tools selected for and developed under this program have been used to evaluate and predict the behavior of cementitious barriers used in near-surface engineered waste disposal systems for periods of performance up to 100 years and longer for operating facilities and longer than 1000 years for waste disposal. The CBP Software Toolbox has produced tangible benefits to the DOE Performance Assessment (PA) community. A review of prior DOE PAs has provided a list of potential opportunities for improving cementitious barrier performance predictions through the use of the CBP software tools. These opportunities include: 1) impact of atmospheric exposure to concrete and grout before closure, such as accelerated slag and Tc-99 oxidation, 2) prediction of changes in K{sub d}/mobility as a function of time that result from changing pH and redox conditions, 3) concrete degradation from rebar corrosion due to carbonation, 4) early age cracking from drying and/or thermal shrinkage and 5) degradation due to sulfate attack. The CBP has already had opportunity to provide near-term, tangible support to ongoing DOE-EM PAs such as the Savannah River Saltstone Disposal Facility (SDF) by providing a sulfate attack analysis that predicts the extent and damage that sulfate ingress will have on the concrete vaults over extended time (i.e., > 1000 years). This analysis is one of the many technical opportunities in cementitious barrier performance that can be addressed by the DOE-EM sponsored CBP software tools. Modification of the existing tools can provide many opportunities to bring defense in depth in prediction of the performance of cementitious barriers over time. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

SIMBAD : a sequence-independent molecular-replacement pipeline

The conventional approach to finding structurally similar search models for use in molecular replacement (MR) is to use the sequence of the target to search against those of a set of known structures. Sequence similarity often correlates with structure similarity. Given sufficient similarity, a known structure correctly positioned in the target cell by the MR process can provide an approximation to the unknown phases of the target. An alternative approach to identifying homologous structures suitable for MR is to exploit the measured data directly, comparing the lattice parameters or the experimentally derived structure-factor amplitudes with those of known structures. Here, SIMBAD , a new sequence-independent MR pipeline which implements these approaches, is presented. SIMBAD can identify cases of contaminant crystallization and other mishaps such as mistaken identity (swapped crystallization trays), as well as solving unsequenced targets and providing a brute-force approach where sequence-dependent search-model identification may be nontrivial, for example because of conformational diversity among identifiable homologues. The program implements a three-step pipeline to efficiently identify a suitable search model in a database of known structures. The first step performs a lattice-parameter search against the entire Protein Data Bank (PDB), rapidly determining whether or not a homologue exists in the same crystal form. The second step is designed to screen the target data for the presence of a crystallized contaminant, a not uncommon occurrence in macromolecular crystallography. Solving structures with MR in such cases can remain problematic for many years, since the search models, which are assumed to be similar to the structure of interest, are not necessarily related to the structures that have actually crystallized. To cater for this eventuality, SIMBAD rapidly screens the data against a database of known contaminant structures. Where the first two steps fail to yield a solution, a final step in SIMBAD can be invoked to perform a brute-force search of a nonredundant PDB database provided by the MoRDa MR software. Through early-access usage of SIMBAD , this approach has solved novel cases that have otherwise proved difficult to solve.

59 BASIC BIOLOGICAL SCIENCES↗

SciPy 1.0: fundamental algorithms for scientific computing in Python

SciPy is an open-source scientific computing library for the Python programming language. Since its initial release in 2001, SciPy has become a de facto standard for leveraging scientific algorithms in Python, with over 600 unique code contributors, thousands of dependent packages, over 100,000 dependent repositories and millions of downloads per year. In this work, we provide an overview of the capabilities and development practices of SciPy 1.0 and highlight some recent technical developments.

97 MATHEMATICS AND COMPUTING↗