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At least 1,027 records · Page 57

A spectral overlay method for dissimilar materials

The spectral overlay method is applied to examine the stress distribution along the interface between the two different materials. The essential feature of the spectral overlay method is that the high resolution of localized steep gradients can be achieved by overlaying a spectral interpolant on a standard finite element mesh. In order to evaluate this method and compare it with conventional finite element method, a test problem with high gradients in Poisson equation has been devised. The results show that this method is very powerful in capturing the shape of the gradient field and its peak value. Solutions for two problems with interfaces between dissimilar materials are then given to illustrate the effectiveness of this method.

Belytschko, T.↗

Prediction of the Thermal Runaway Limit and Optimal Operation of Heat Transfer-Limited, Fixed-Bed Reactor Systems

Here, we derive a new prediction for thermal runaway starting from the alpha model for fixed-bed reactor systems. This method accounts for thermal resistance internal to the reactor tube and the radial temperature gradients that result. To showcase our method, we compare its predictions to other common criteria for thermal runaway using o-xylene oxidation as the example chemistry. Even in systems where internal heat transfer is negligible, the empirical practical design criterion for thermal runaway is inaccurate. For cases where internal heat transfer is relevant, our runaway limit is more stringent than limits derived from simpler 1-D models. To augment our work, we optimize the product yield with the thermal runaway constraint using orthogonal collocation. Using the alpha model, the results illustrate that the thermal runaway limit can be accurately determined using either numerical or analytical methods.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Toward continuum gyrokinetic study of high-field mirrors

High-temperature superconducting (HTS) magnetic mirrors under development exploit strong fields with high mirror ratio to compress loss cones and enhance confinement and may offer cheaper, more compact fusion power plant candidates. This new class of devices could exhibit largely unexplored interchange and gradient-driven modes. Such instabilities, and methods to stabilize them, can be studied with gyrokinetics, given the strong magnetization and prevalence of kinetic effects. Our focus here is to (a) determine if oft-used gyrokinetic models for open field lines produce the electron-confining (Pastukhov) electrostatic potential and (b) examine and address challenges faced by gyrokinetic codes in studying HTS mirrors. Here, we show that a one-dimensional limit of said models self-consistently develops a potential qualitatively approaching the analytical Pastukhov level. Additionally, we describe the computational challenges of studying high mirror ratios with open field line gyrokinetic solvers and offer a force softening method to mitigate small time steps needed for time integration in colossal magnetic field gradients produced by HTS coils, providing a 19X speedup.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

PyTREES

PyTREES (Python tool for Training/Testing Robust Explainable Ensembles on Spectra) is software that implements a data-driven approach to predicting the amount of specific oxides present in materials samples of laser-induced breakdown spectroscopy (LIBS); such as from the ChemCam instrument suite onboard the NASA Curiosity rover. PyTREES is designed to input LIBS data in the format provided by the ChemCam team [1]. PyTREES then applies appropriate pre-processing to this data [2], and implements several regression methods for predicting oxides from spectra. The regression methods include: ensemble methods (random forest, extra trees, and gradient boosting regression) and blended submodels using the “double blending” technique. PyTREES additionally implements methods for quantifying the importance of features in regression model: (1) mean decrease in impurity (MDI) and (2) permutation importance to investigate the wavelengths used by the regression methods. [1] Gasda et al. (2021). Spectrochim Acta B, 181, 106223. [2] Clegg et al. (2017). Spectrochim Acta B , 129, 64–85.

Oyen, Diane↗

Parameter estimation for terrain modeling from gradient data

This paper developes a method for mathematically modeling terrain surfaces for use on an unmanned Martian vehicle. The data collected by the vehicle consists of terrain height and two directional slopes at each data point. The parameters for the mathematical terrain model are stochastically determined by using least square approximations.-

Shen, C. N.↗

The formation of stable pH gradients with weak monovalent buffers for isoelectric focusing in free solution

Two methods which utilize simple buffers for the generation of stable pH gradients (useful for preparative isoelectric focusing) are compared and contrasted. The first employs preformed gradients comprised of two simple buffers in density-stabilized free solution. The second method utilizes neutral membranes to isolate electrolyte reservoirs of constant composition from the separation column. It is shown by computer simulation that steady-state gradients can be formed at any pH range with any number of components in such a system.

Mosher, Richard A.↗

Center for Gyrokinetic Particle Simulations of Turbulent Transport. Final report

This is the Final Technical Report for University of Colorado's portion of the SciDAC project 'Center for Gyrokinetic Particle Simulation of Turbulent Transport.' This is funded as a multi-institutional SciDAC Center and W.W. Lee at the Princeton Plasma Physics Laboratory is the lead Principal Investigator. Scott Parker is the local Principal Investigator for University of Colorado and Yang Chen is a Co-Principal Investigator. This is Cooperative Agreement DE-FC02-05ER54816. Research personnel include Yang Chen (Senior Research Associate), Jianying Lang (Graduate Research Associate, Ph.D. Physics Student) and Scott Parker (Associate Professor). Research includes core microturbulence studies of NSTX, simulation of trapped electron modes, development of efficient particle-continuum hybrid methods and particle convergence studies of electron temperature gradient driven turbulence simulations. Recently, the particle-continuum method has been extended to five-dimensions in GEM. We find that actually a simple method works quite well for the Cyclone base case with either fully kinetic or adiabatic electrons. Particles are deposited on a 5D phase-space grid using nearest-grid-point interpolation. Then, the value of delta-f is reset, but not the particle's trajectory. This has the effect of occasionally averaging delta-f of nearby (in the phase space) particles. We are currently trying to estimate the dissipation (or effective collision operator). We have been using GEM to study turbulence and transport in NSTX with realistic equilibrium density and temperature profiles, including impurities, magnetic geometry and ExB shear flow. Greg Rewoldt, PPPL, has developed a TRANSP interface for GEM that specifies the equilibrium profiles and parameters needed to run realistic NSTX cases. Results were reported at the American Physical Society - Division of Plasma Physics, and we are currently running convergence studies to ensure physical results. We are also studying the effect of parallel shear flows, which can be quite strong in NSTX. Recent long-time simulations of electron temperature gradient driven turbulence, show that zonal flows slowly grow algebraically via the Rosenbluth-Hinton random walk mechanism. Eventually, the zonal flow gets to a level where it shear suppresses the turbulence. We have demonstrated this behavior with Cyclone base-case parameters, except with a 30% lower temperature gradient. We can demonstrate the same phenomena at higher gradients, but so far, have been unable to get a converged result at the higher temperature gradient. We find that electron ion collisions cause the zonal flows to grow at a slower rate and results in a higher heat flux. So, far all ETG simulations that come to a quasi-steady state show continued build up of zonal flow, see it appears to be a universal phenomena (for ETG). Linear and nonlinear simulations of Collisional and Collisionless trapped electron modes are underway. We find that zonal flow is typically important. We can, however, reproduce the Tannert and Jenko result (that zonal flow is unimportant) using their parameters with the electron temperature three times the ion temperature. For a typical weak gradient core value of density gradient and no temperature gradient, the CTEM is dominant. However, for a steeper density gradient (and still no temperature gradient), representative of the edge, higher k drift-waves are dominant. For the weaker density gradient core case, nonlinear simulations using GEM are routine. For the steeper gradient edge case, the nonlinear fluctuations are very high and a stationary state has not been obtained. This provides motivation for the particle-continuum algorithm. We also note that more physics, e.g. profile variation and equilibrium ExB shear flow should be significantly stabilizing, making such simulations feasible using standard delta-f techniques. This research is ongoing.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

A simple method for simulating wind profiles in the boundary layer of tropical cyclones

A method to simulate characteristics of wind speed in the boundary layer of tropical cyclones in an idealized manner is developed and evaluated. The method can be used in a single-column modelling set-up with a planetary boundary-layer parametrization, or within large-eddy simulations (LES). The key step is to include terms in the horizontal velocity equations representing advection and centrifugal acceleration in tropical cyclones that occurs on scales larger than the domain size. Compared to other recently developed methods, which require two input parameters (a reference wind speed, and radius from the centre of a tropical cyclone) this new method also requires a third input parameter: the radial gradient of reference wind speed. With the new method, simulated wind profiles are similar to composite profiles from dropsonde observations; in contrast, a classic Ekman-type method tends to overpredict inflow-layer depth and magnitude, and two recently developed methods for tropical cyclone environments tend to overpredict near-surface wind speed. When used in LES, the new technique produces vertical profiles of total turbulent stress and estimated eddy viscosity that are similar to values determined from low-level aircraft flights in tropical cyclones. Lastly, temporal spectra from LES produce an inertial subrange for frequencies ≳0.1 Hz, but only when the horizontal grid spacing ≲20 m.

17 WIND ENERGY↗

Mineral density volume gradients in normal and diseased human tissues

Clinical computed tomography provides a single mineral density (MD) value for heterogeneous calcified tissues containing early and late stage pathologic formations. The novel aspect of this study is that, it extends current quantitative methods of mapping mineral density gradients to three dimensions, discretizes early and late mineralized stages, identifies elemental distribution in discretized volumes, and correlates measured MD with respective calcium (Ca) to phosphorus (P) and Ca to zinc (Zn) elemental ratios. To accomplish this, MD variations identified using polychromatic radiation from a high resolution micro-computed tomography (micro-CT) benchtop unit were correlated with elemental mapping obtained from a microprobe X-ray fluorescence (XRF) using synchrotron monochromatic radiation. Digital segmentation of tomograms from normal and diseased tissues (N=5 per group; 40-60 year old males) contained significant mineral density variations (enamel: 2820-3095mg/cc, bone: 570-1415mg/cc, cementum: 1240-1340mg/cc, dentin: 1480-1590mg/cc, cementum affected by periodontitis: 1100-1220mg/cc, hypomineralized carious dentin: 345-1450mg/cc, hypermineralized carious dentin: 1815-2740mg/cc, and dental calculus: 1290-1770mg/cc). A plausible linear correlation between segmented MD volumes and elemental ratios within these volumes was established, and Ca/P ratios for dentin (1.49), hypomineralized dentin (0.32-0.46), cementum (1.51), and bone (1.68) were observed. Furthermore, varying Ca/Zn ratios were distinguished in adapted compared to normal tissues, such as in bone (855-2765) and in cementum (595-990), highlighting Zn as an influential element in prompting observed adaptive properties. Hence, results provide insights on mineral density gradients with elemental concentrations and elemental footprints that in turn could aid in elucidating mechanistic processes for pathologic formations.

59 BASIC BIOLOGICAL SCIENCES↗

Multireference Electron Correlation Methods: Journeys along Potential Energy Surfaces

Multireference electron correlation methods describe static and dynamical electron correlation in a balanced way and, therefore, can yield accurate and predictive results even when single-reference methods or multiconfigurational self-consistent field theory fails. One of their most prominent applications in quantum chemistry is the exploration of potential energy surfaces. This includes the optimization of molecular geometries, such as equilibrium geometries and conical intersections and on-the-fly photodynamics simulations, both of which depend heavily on the ability of the method to properly explore the potential energy surface. Because such applications require nuclear gradients and derivative couplings, the availability of analytical nuclear gradients greatly enhances the scope of quantum chemical methods. This review focuses on the developments and advances made in the past two decades. A detailed account of the analytical nuclear gradient and derivative coupling theories is presented. Emphasis is given to the software infrastructure that allows one to make use of these methods. Notable applications of multireference electron correlation methods to chemistry, including geometry optimizations and on-the-fly dynamics, are summarized at the end followed by a discussion of future prospects.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Interlocked optimization and fast gradient algorithm for a seismic inverse problem

Highlights: {yields} A 2D extension of the 1D nonlinear inversion of well-seismic data is given. {yields} Appropriate regularization yields a well-determined large scale inverse problem. {yields} An interlocked optimization loop acts as an efficient preconditioner. {yields} The adjoint state method is used to compute the misfit function gradient. {yields} Domain decomposition method yields an efficient parallel implementation. - Abstract: We give a nonlinear inverse method for seismic data recorded in a well from sources at several offsets from the borehole in a 2D acoustic framework. Given the velocity field, approximate values of the impedance are recovered. This is a 2D extension of the 1D inversion of vertical seismic profiles . The inverse problem generates a large scale undetermined ill-conditioned problem. Appropriate regularization terms render the problem well-determined. An interlocked optimization algorithm yields an efficient preconditioning. A gradient algorithm based on the adjoint state method and domain decomposition gives a fast parallel numerical method. For a realistic test case, convergence is attained in an acceptable time with 128 processors.

97 MATHEMATICS AND COMPUTING↗

Gas-phase oxygen abundances and radial metallicity gradients in the two nearby spiral galaxies NGC 7793 and NGC 4945

Gas-phase abundances in H ii regions of two spiral galaxies, NGC 7793 and NGC 4945, have been studied to determine their radial metallicity gradients. We used the strong-line method to derive oxygen abundances from spectra acquired with GMOS-S, the multi-object spectrograph on the 8 m Gemini South telescope. We found that NGC 7793 has a well-defined gas-phase radial oxygen gradient of −0.321 ± 0.112 dex R{sub 25}{sup −1} (or −0.054 ± 0.019 dex kpc{sup −1}) in the galactocentric range 0.17 < R{sub G}/R{sub 25} < 0.82, not dissimilar from gradients calculated with direct abundance methods in galaxies of similar mass and morphology. We also determined a shallow radial oxygen gradient in NGC 4945, −0.253 ± 0.149 dex R{sub 25}{sup −1} (or −0.019 ± 0.011 dex kpc{sup −1}) for 0.04 < R{sub G}/R{sub 25} < 0.51, where the larger relative uncertainty derives mostly from the larger inclination of this galaxy. NGC 7793 and NGC 4945 have been selected for this study because they are similar, in mass and morphology, to M33 and the Milky Way, respectively. Since at zeroth order we expect the radial metallicity gradients to depend on mass and galaxy type, we compared our galaxies in the framework of radial metallicity models best suited for M33 and the Galaxy. We found a good agreement between M33 and NGC 7793, pointing toward similar evolution for the two galaxies. We notice instead differences between NGC 4945 and the radial metallicity gradient model that best fits the Milky Way. We found that these differences are likely related to the presence of an active galactic nucleus combined with a bar in the central regions of NGC 4945, and to its interacting environment.

79 ASTRONOMY AND ASTROPHYSICS↗

A study of cell electrophoresis as a means of purifying growth hormone secreting cells

Growth hormone secreting cells of the rat anterior pituitary are heavily laden with granules of growth hormone and can be partialy purified on the basis of their resulting high density. Two methods of preparative cell electrophoresis were investigated as methods of enhancing the purification of growth hormone producing cells: density gradient electrophoresis and continuous flow electrophoresis. Both methods provided a two- to four-fold enrichment in growth hormone production per cell relative to that achieved by previous methods. Measurements of electrophoretic mobilities by two analytical methods, microscopic electrophoresis and laser-tracking electrophoresis, revealed very little distinction between unpurified anterior pituitary cell suspensions and somatotroph-enriched cell suspensions. Predictions calculated on the basis of analytical electrophoretic data are consistent with the hypothesis that sedimentation plays a significant role in both types of preparative electrophoresis and the electrophoretic mobility of the growth hormone secreting subpopulation of cells remains unknown.

Plank, Lindsay D.↗

Improved method for calculating transonic velocities on blade-to-blade stream surfaces of a turbomachine

A method was developed to improve the accuracy of an existing computer program used to calculate transonic velocities on a blade-to-blade surface of a turbomachine. The method eliminates problems encountered in obtaining solutions with the velocity gradient equation when large gradients in velocity occur through the blade row. With the improved method, results indicate that the transonic solution can be obtained by scaling the velocities obtained at the reduced mass flow rate where all velocities are subsonic thereby eliminating the need for a solution of the velocity gradient equation. Solutions obtained with the scaling method on a two dimensional compressor cascade and an axial turbine stator show good agreement with experimental data. The results obtained for the stationary blade rows and comparison of analytical results obtained with and without the present method suggest that the method will yield an improved solution for centrifugal compressor impellers.

Wood, J. R.↗

Hybrid nested sampling algorithm for Bayesian model selection applied to inverse subsurface flow problems

A Hybrid Nested Sampling (HNS) algorithm is proposed for efficient Bayesian model calibration and prior model selection. The proposed algorithm combines, Nested Sampling (NS) algorithm, Hybrid Monte Carlo (HMC) sampling and gradient estimation using Stochastic Ensemble Method (SEM). NS is an efficient sampling algorithm that can be used for Bayesian calibration and estimating the Bayesian evidence for prior model selection. Nested sampling has the advantage of computational feasibility. Within the nested sampling algorithm, a constrained sampling step is performed. For this step, we utilize HMC to reduce the correlation between successive sampled states. HMC relies on the gradient of the logarithm of the posterior distribution, which we estimate using a stochastic ensemble method based on an ensemble of directional derivatives. SEM only requires forward model runs and the simulator is then used as a black box and no adjoint code is needed. The developed HNS algorithm is successfully applied for Bayesian calibration and prior model selection of several nonlinear subsurface flow problems.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

A new modified BFGS method for unconstrained optimization problems

Using chain rule, we propose a modified secant equation to get a more accurate approximation of the second curvature of the objective function. Then, based on this modified secant equation we present a new BFGS method for solving unconstrained optimization problems. The proposed method makes use of both gradient and function values, and utilizes information from two most recent steps, while the usual secant relation uses only the latest step information. Under appropriate conditions, we show that the proposed method is globally convergent without convexity assumption on the objective function. Comparative numerical results show computational efficiency of the proposed method in the sense of the Dolan–Moré performance profiles.

97 MATHEMATICS AND COMPUTING↗

SU-E-J-161: Inverse Problems for Optical Parameters in Laser Induced Thermal Therapy

Purpose: Magnetic resonance-guided laser-induced thermal therapy (MRgLITT) is investigated as a neurosurgical intervention for oncological applications throughout the body by active post market studies. Real-time MR temperature imaging is used to monitor ablative thermal delivery in the clinic. Additionally, brain MRgLITT could improve through effective planning for laser fiber's placement. Mathematical bioheat models have been extensively investigated but require reliable patient specific physical parameter data, e.g. optical parameters. This abstract applies an inverse problem algorithm to characterize optical parameter data obtained from previous MRgLITT interventions. Methods: The implemented inverse problem has three primary components: a parameter-space search algorithm, a physics model, and training data. First, the parameter-space search algorithm uses a gradient-based quasi-Newton method to optimize the effective optical attenuation coefficient, μ-eff. A parameter reduction reduces the amount of optical parameter-space the algorithm must search. Second, the physics model is a simplified bioheat model for homogeneous tissue where closed-form Green's functions represent the exact solution. Third, the training data was temperature imaging data from 23 MRgLITT oncological brain ablations (980 nm wavelength) from seven different patients. Results: To three significant figures, the descriptive statistics for μ-eff were 1470 m{sup −1} mean, 1360 m{sup −1} median, 369 m{sup −1} standard deviation, 933 m{sup −1} minimum and 2260 m{sup −1} maximum. The standard deviation normalized by the mean was 25.0%. The inverse problem took <30 minutes to optimize all 23 datasets. Conclusion: As expected, the inferred average is biased by underlying physics model. However, the standard deviation normalized by the mean is smaller than literature values and indicates an increased precision in the characterization of the optical parameters needed to plan MRgLITT procedures. This investigation demonstrates the potential for the optimization and validation of more sophisticated bioheat models that incorporate the uncertainty of the data into the predictions, e.g. stochastic finite element methods.

62 RADIOLOGY AND NUCLEAR MEDICINE↗