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At least 1,027 records · Page 57

Structural Evolution of Polylactide Molecular Bottlebrushes: Kinetics Study by Size Exclusion Chromatography, Small Angle Neutron Scattering and Simulations

Structural evolution from poly(lactide) (PLA) macromonomer to resultant PLA molecular bottlebrush during ring opening metathesis polymerization (ROMP) was investigated for the first time by combining size exclusion chromatography (SEC), small-angle neutron scattering (SANS) and coarse-grained molecular dynamics (CG-MD) simulations. Multiple aliquots were collected at various reaction times during ROMP, and subsequently analyzed by SEC and SANS. The two complementary techniques enable the understanding of systematic changes in conversion, molecular weight and dispersity as well as structural details of PLA molecular bottlebrushes. CG-MD simulation not only predicts the experimental observations, but it also provides further insight into the analysis and interpretation of data obtained in SEC and SANS experiments. We find that PLA molecular bottlebrushes undergo three conformational transitions with increasing conversion (i.e., increasing the backbone length): (1) from an elongated to a globular shape due to longer side chain at lower conversion, (2) from a globular to an elongated shape at intermediate conversion caused by excluded volume of PLA side chain, and (3) the saturation of contour length at higher conversion due to chain transfer reactions.

Pickel, Deanna L↗

Design Rules for Tailoring Antireflection Properties of Hierarchical Optical Structures

Hierarchical structures consisting of small sub-wavelength features stacked atop larger structures have been demonstrated as an effective means of reducing the reflectance of surfaces. However, optical devices require different antireflective properties depending on the application, and general unifying guidelines on hierarchical structures' design to attain a desired antireflection spectral response are still lacking. The type of reflectivity (diffuse, specular, or total/hemispherical) and its angular- and spectral-dependence are all dictated by the structural parameters. Through computational and experimental studies, guidelines have been devised to modify these various aspects of reflectivity across the solar spectrum by proper selection of the features of hierarchical structures. In this wavelength regime, micrometer-scale substructures dictate the long-wavelength spectral response and effectively reduce specular reflectance, whereas nanometer-scale substructures dictate primarily the visible wavelength spectral response and reduce diffuse reflectance. Coupling structures having these two length scales into hierarchical arrays impressively reduces surfaces' hemispherical reflectance across a broad spectrum of wavelengths and angles. Furthermore, such hierarchical structures in silicon are demonstrated having an average total reflectance across the solar spectrum of 1.1% (average weighted reflectance of 1% in the 280–2500 nm range of the AM 1.5 G spectrum) and specular reflectance <1% even at angles of incidence as high as 67°.

14 SOLAR ENERGY↗

Atomic Structure of Au Nanoparticles on a Silica Support by an X-ray PDF Study

We investigated the atomic structure of gold nanoparticles with an average size of {approx}5 nm in diameter, supported by silica. We used high-energy X-ray diffraction and the atomic pair distribution function (PDF) to probe the local atomic structure. Measurements were performed from 25 to 950 C. The structure is approximately fcc in average but exhibits small distortions. The structural distortion increases with the temperature and could be related to the catalytic activity of gold nanoparticles. Above 425 C, rapid particle growth and coalescence were observed.

36 MATERIALS SCIENCE↗

Structure and reactivity of iridium oxide layers grown on Ir(1 0 0) by oxidation at sub-ambient O 2 pressures

We used low energy electron diffraction (LEED) and temperature programmed desorption (TPD) to investigate the structure and reactivity of iridium oxide layers prepared by oxidizing Ir(100) at 765 K and O 2 pressures ranging from 0.05 to 5 Torr. Our LEED results provide evidence that Ir(100) oxidation at O 2 pressures up to 0.20 Torr produces a mixture of Ir oxide structures present as small domains, including a commensurate IrO 2 (101) structure that coexists with other structures. Oxidizing from 0.50 to 1 Torr causes formation of a commensurate IrO 2 (110)R27° structure and a sharp rise in the oxygen uptake from ~8 to 20 ML (monolayer) as the films exhibit signs of roughening. Further increasing the O 2 pressure from 1 to 5 Torr causes the IrO 2 (110)R27° structure to be replaced with a so-called IrO 2 (110)-aligned structure, for which the IrO 2 (110) lattice vectors align with those of the Ir(100) substrate. We find that the oxidized Ir(100) surfaces become increasingly reactive toward the dissociation and oxidation of CH 4 as IrO 2 (110) develops on the surface, and observe that the IrO 2 (110)-aligned structure is more reactive than the IrO 2 (110)R27° phase. Furthermore, our findings demonstrate that the oxide phase evolution on Ir(100) is sensitive to the O 2 pressure in the range from 0.05 to 5 Torr, and that the development of reactive IrO 2 (110) structures requires elevated O 2 pressures (> 0.5 Torr) and temperature.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Process reduces pore diameters to produce superior filters

Porous metal structure with very small pore diameters is produced by heating the structure in oxygen for an oxidized surface layer, cooling it, and heating it in hydrogen to deoxidize the oxidized portion. Such structures are superior catalyst beds and filters.

Todd, H. H.↗

Plasma and field observation of the structures in the polar solar wind

Since passing essentially continuously into regions of solar wind from the southern polar coronal hole at approximately 36 deg S, Ulysses has observed frequent structures lasting from several hours to several days. In addition to Alfven waves and coronal mass ejections, which have been discussed by previous authors, two other sorts of structures are routinely evident. This paper provides the first report of these structures in the high latitude solar wind: (1) small scale compressional structures, and (2) pressure balance structures. The compressional structures are driven by faster solar wind overtaking the slower solar wind ahead of it and exhibit the plasma and field properties expected for compressions. However, unlike large scale stream interaction regions observed in and near the ecliptic plane, these structures are much smaller scale and are transient, not recurring from one rotation to the next. The pressure balance structures are indicated by roughly equal increases in the plasma pressure and decreases in the magnetic field pressure. These structures, which are several degrees across, are more dense and have higher plasma pressures and betas than the surrounding solar wind. These pressure balance structures seem to be likely manifestations of 'polar plumes.'

McComas, D. J.↗

TPSAS-NF1676L-13674-DND

Sonic Boom Modeling Overview What are we trying to do? Understand the impact of sonic booms from new low-boom aircraft designs on community residents What is our approach? - Atmospheric Propagation: Develop more accurate sonic boom propagation models - Structural Response & Modeling: Examine sonic boom transmission into small and large structures - Human Response & Modeling: Develop psychoacoustic model of human response to low booms (both outdoors and indoors) for single and multiple events - Work cooperatively with regulators (FAA, ICAO) and other researchers (industry, academia, JAXA, others) What are the payoffs if we are successful? - Replace current prohibition of civil supersonic overland flight with a noise-based standard for aircraft certification

Alexandra Loubeau↗

Purification of the small mechanosensitive channel of Escherichia coli (MscS): the subunit structure, conduction, and gating characteristics in liposomes

The small mechanosensitive channel, MscS, is a part of the turgor-driven solute efflux system that protects bacteria from lysis in the event of osmotic downshift. It has been identified in Escherichia coli as a product of the orphan yggB gene, now called mscS (Levina et al., 1999, EMBO J. 18:1730). Here I show that that the isolated 31-kDa MscS protein is sufficient to form a functional mechanosensitive channel gated directly by tension in the lipid bilayer. MscS-6His complexes purified in the presence of octylglucoside and lipids migrate in a high-resolution gel-filtration column as particles of approximately 200 kDa. Consistent with that, the protein cross-linking patterns predict a hexamer. The channel reconstituted in soybean asolectin liposomes was activated by pressures of 20-60 mm Hg and displayed the same asymmetric I-V curve and slight anionic preference as in situ. At the same time, the single-channel conductance is proportional to the buffer conductivity in a wide range of salt concentrations. The rate of channel activation in response to increasing pressure gradient across the patch was slower than the rate of closure in response to decreasing steps of pressure gradient. Therefore, the open probability curves were recorded with descending series of pressures. Determination of the curvature of patches by video imaging permitted measurements of the channel activity as a function of membrane tension (gamma). Po(gamma) curves had the midpoint at 5.5 +/- 0.1 dyne/cm and gave estimates for the energy of opening DeltaG = 11.4 +/- 0.5 kT, and the transition-related area change DeltaA = 8.4 +/- 0.4 nm(2) when fitted with a two-state Boltzmann model. The correspondence between channel properties in the native and reconstituted systems is discussed.

NASA Discipline Cell Biology↗

Facile Modulation of Antibody Fucosylation with Small Molecule Fucostatin Inhibitors and Cocrystal Structure with GDP-Mannose 4,6-Dehydratase

The efficacy of therapeutic antibodies that induce antibody-dependent cellular cytotoxicity can be improved by reduced fucosylation. Consequently, fucosylation is a critical product attribute of monoclonal antibodies produced as protein therapeutics. Small molecule fucosylation inhibitors have also shown promise as potential therapeutics in animal models of tumors, arthritis, and sickle cell disease. Potent small molecule metabolic inhibitors of cellular protein fucosylation, 6,6,6-trifluorofucose per-O-acetate and 6,6,6-trifluorofucose (fucostatin I), were identified that reduces the fucosylation of recombinantly expressed antibodies in cell culture in a concentration-dependent fashion enabling the controlled modulation of protein fucosylation levels. 6,6,6-Trifluorofucose binds at an allosteric site of GDP-mannose 4,6-dehydratase (GMD) as revealed for the first time by the X-ray cocrystal structure of a bound allosteric GMD inhibitor. 6,6,6-Trifluorofucose was found to be incorporated in place of fucose at low levels (<1%) in the glycans of recombinantly expressed antibodies. A fucose-1-phosphonate analog, fucostatin II, was designed that inhibits fucosylation with no incorporation into antibody glycans, allowing the production of afucosylated antibodies in which the incorporation of non-native sugar is completely absent—a key advantage in the production of therapeutic antibodies, especially biosimilar antibodies. Inhibitor structure–activity relationships, identification of cellular and inhibitor metabolites in inhibitor-treated cells, fucose competition studies, and the production of recombinant antibodies with varying levels of fucosylation are described.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Small-scale eruptive filaments on the quiet sun

A study of a little known class of eruptive events on the quiet sun was conducted. All of 61 small-scale eruptive filamentary structures were identified in a systematic survey of 32 days of H alpha time-lapse films of the quiet sun acquired at Big Bear Solar Observatory. When fully developed, these structures have an average length of 15 arc seconds before eruption. They appear to be the small-scale analog of large-scale eruptive filaments observed against the disk. At the observed rate of 1.9 small-scale eruptive features per field of view per average 7.0 hour day, the rate of occurence of these events on the sun were estimated to be greater than 600 per 24 hour day.. The average duration of the eruptive phase was 26 minutes while the average lifetime from formation through eruption was 70 minutes. A majority of the small-scale filamentary sturctures were spatially related to cancelling magnetic features in line-of-sight photospheric magnetograms. Similar to large-scale filaments, the small-scale filamentary structures sometimes divided opposite polarity cancelling fragments but often had one or both ends terminating at a cancellation site. Their high numbers appear to reflect the much greater flux on the quiet sun. From their characteristics, evolution, and relationship to photospheric magnetic flux, it was concluded that the structures described are small-scale eruptive filaments and are a subset of all filaments.

Hermans, Linda M.↗

Convective solar nebula

Analyzing turbulent flows with rotation, Dubrulle and Valdettaro have concluded that some new effects come into play and may modify the standard picture we have concerning turbulence. In that respect the value of the Rossby number is of crucial importance since it will determine the transition between regimes where rotation is or is not important. With rotation there will be a tendency to constrain the motion to the plane perpendicular to the rotation axis and as a consequence the horizontal scale will increase as compared to the longitudinal one, which means that the turnover time in this direction will increase. The net effect is that the energy cascade down process is hindered by rotation. As a matter of fact, when rotation is present one observes two cascades: an enstrophy (vorticity) cascade from large scales to small scales; and an inverse energy cascade from small scales to large scales. Since the first process is not efficient on transporting energy to the dissipation range, what we see is energy storage in the large structures at the expense of the small structures. This kind of behavior has been confirmed experimentally. For a very large gamma we obtain, in the inertial range, a spectrum of k(exp -3) instead of the usual Kilmogorov's k(exp -5/3) spectrum. In reality, when rotation is dominant, energy gets stored in inertial waves that propagate it essentially in the longitudinal direction. In that case, we can no longer assign just one viscosity to the fluid and, what is most important, the concept of viscosity loses its meaning since we no longer have local transport of energy. Such results, however, were derived considering a hot disk, in which opacity is mainly given by electron scattering. In the present work we have applied the formulation developed in the previous work for the description of the viscous-stage solar nebula.

Meirellesfilho, C.↗

Machine Learning-Guided Exploration of Ternary Metal Borohydrides

We employ deep machine learning (ML) combined with first-principles calculations to explore energetically favorable ternary metal borohydrides. Using La–B–H as a prototype system, we demonstrate that iteratively trained ML models can efficiently screen hundreds of thousands of hypothetical structures and accurately select a small fraction of promising structures and compositions for further studies by first-principles calculations. Such an ML-guided approach dramatically accelerates the pace of materials discovery. A number of new La–B–H ternary compounds with formation energies within 100 meV/atom above the known ternary convex hull are discovered, including a known stable La(BH 4 ) 3 phase. Moreover, by replacing La with Group 1, 2, 3, 13, and 14 elements in the four lowest-energy La–B–H structures from our ML-guided predictions, several low-energy X–B-H (X = Mg, Ca, Sr, Ba, Sc, Y, Ac, Al, Ga, In, Si, Ge, Sn, Pb) compounds are predicted.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Understanding Differences in Water Adsorption Isotherms: Structural Variations, Force Fields, and Monte Carlo Simulation Approaches

Accurate prediction of water adsorption in micro- and mesoporous materials with hydrophobic pores is essential for the design and characterization of advanced adsorbent materials for separation and energy applications. Here, we assess the reproducibility and consistency of water adsorption isotherms in two microporous all-silica MFI zeolite structures (MFI-K and MFI-O) using two different zeolite force fields and three simulation approaches: grand canonical Monte Carlo (GCMC), Gibbs ensemble Monte Carlo (GEMC), and transition matrix Monte Carlo (TMMC). We demonstrate that consistent treatment of the bulk fluid phase in GCMC and TMMC simulations is critical for reconciling isotherms across methods, and we construct simulation-based equations of state for the TIP4P water model to enable rigorous fugacity-to-pressure conversions. Large shifts in the isotherms are observed for two zeolite force fields developed using different parametrization strategies, with the GCS force field representing implicitly a defect-containing all-silica zeolite, whereas the TraPPE-zeo force field accurately represents an essentially defect-free all-silica zeolite. While water in the van Koningsveld structure of MFI exhibits a first-order phase transition and condensation-like step for adsorption near room temperature, water in the Olson structure of MFI displays continuous adsorption, attributed to differences in the adsorption free energy landscapes. Structural analysis reveals that small geometric variations, particularly Si–O–Si bond angles near the strongest adsorption sites, lead to these substantial differences in adsorption behavior. Furthermore, our results highlight the sensitivity of simulated water adsorption isotherms in hydrophobic frameworks to seemingly small differences in the framework structures, force field parametrization, and simulation approaches.

36 MATERIALS SCIENCE↗

Maximizing the efficiency of plasma-based lepton accelerators

The next generation of particle accelerators will likely rely on compact accelerating structures to achieve very high gradients; one such candidate is accelerators using plasmas for the accelerating structures. Because of the small length scales of these structures, they can also be prone to the beam break-up instability, which would spoil the quality of the beam and leave it unsuitable for many applications. The goal of this project is to develop a framework for understanding the instabilities in plasma accelerators using language from conventional linear accelerator instabilities, such as wake fields and wake functions. During the course of this Phase I, we benchmarked a pseudo-spectral particle-in-cell code to determine its suitability for computing wake functions, and developed a procedure for extracting wake functions from a sequence of simulations using this code.

43 PARTICLE ACCELERATORS↗

Real parameter margin computation for uncertain structural dynamic systems

This paper is concerned with the problem of computing real parameter margins for stabilized, structural dynamic systems with the masses, spring constants, and damping constants as uncertain parameters. Numerical algorithms for uncertain systems with multilinear parameters are investigated. It is shown that for a certain class of structural dynamic systems with small passive damping (e.g., flexible structures in space), the computational complexity of the problem can be avoided by modeling the system as a conservative plant, without loss of any practical significance.

Wie, Bong↗

Structural and Kinetic Studies of Novel Cytochrome P450 Small-Alkane Hydroxylases

The goals of this project are to investigate (1) the kinetics and stabilities of engineered cytochrome P450 (P450) small alkane hydroxylases and their evolutionary intermediates, (2) the structural basis for catalytic proficiency on small alkanes of these engineered P450s, and (3) the changes in redox control resulting from protein engineering. To reach these goals, we have established new methods for determining the kinetics and stabilities of multicomponent P450s such as CYP153A6. Using these, we were able to determine that CYP153A6 is proficient for hydroxylation of alkanes as small as ethane, an activity that has never been observed previously in any natural P450. To elucidate the structures of the engineered P450s, we obtained x-ray diffraction data for two variants in the P450 PMO (propane monooxygenase) lineage and a preliminary structure for the most evolved variant. This structure shows changes in the substrate binding regions of the enzyme and a reduction in active site volume that are consistent with the observed changes in substrate specificity from fatty acids in the native enzyme to small alkanes in P450 PMO . We also constructed semi-rational designed libraries mutating only residues in the enzyme active site that in one round of mutagenesis and screening produced variants that achieved nearly half of the activity of the most evolved enzymes of the P450 PMO lineage. Finally, we found that changes in redox properties of the laboratory-evolved P450 alkane hydroxylases did not reflect the improvement in their electron transfer efficiency. The heme redox potential remained constant throughout evolution, while activity increased and coupling efficiency improved from 10% to 90%. The lack of correlation between heme redox potential and enzyme activity and coupling efficiency led us to search for other enzyme properties that could be better predictors for activity towards small alkanes, specifically methane. We investigated the oxidation potential of the radical oxidants of various P450s directly using a chemical approach to generate the radical in situ . This resulted in the first report of direct methane to methanol conversion by a heme porphyrin catalyst using the soluble P450 from Mycobacterium sp , CYP153A6.

03 NATURAL GAS↗

Theoretical research program to study transition metal trimers and embedded clusters

Small transition metal clusters at a high level of approximation i.e. including all the valence electrons in the calculation and also including extensive electron correlation were studied. Perhaps the most useful end result of these studies is the qualitative information about the electronic structure of these small metal clusters, including the nature of the bonding. The electronic structure studies of the small clusters are directly applicable to problems in catalysis. From comparison of dimers, trimers and possibly higher clusters, it is possible to extrapolate the information obtained to provide insights into the electronic structure of bulk transition metals and their interaction with other atoms and molecules at both surface and interior locations.

Walch, S. P.↗

Modeling Structural Colors from Disordered One-Component Colloidal Nanoparticle-Based Supraballs Using Combined Experimental and Simulation Techniques

Bright, saturated structural colors in birds have inspired synthesis of self-assembled, disordered arrays of assembled nanoparticles with varied particle spacings and refractive indices. However, predicting colors of assembled nanoparticles, and thereby guiding their synthesis, remains challenging due to the effects of multiple scattering and strong absorption. In this work, we use a computational approach to first reconstruct the nanoparticles’ assembled structures from small-angle scattering measurements and then input the reconstructed structures to a finite-difference time-domain method to predict their color and reflectance. This computational approach is successfully validated by comparing its predictions against experimentally measured reflectance and provides a pathway for reverse engineering colloidal assemblies with desired optical and photothermal properties.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗