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At least 1,027 records · Page 57

Structural basis of tubulin detyrosination by vasohibins

Microtubules are regulated by post-translational modifications of tubulin. The ligation and cleavage of the carboxy-terminal tyrosine of α-tubulin impact microtubule functions during mitosis, cardiomyocyte contraction and neuronal processes. Tubulin tyrosination and detyrosination are mediated by tubulin tyrosine ligase and the recently discovered tubulin detyrosinases, vasohibin 1 and 2 (VASH1 and VASH2) bound to the small vasohibin-binding protein (SVBP). In this paper, we report the crystal structures of human VASH1–SVBP alone, in complex with a tyrosine-derived covalent inhibitor and bound to the natural product parthenolide. The structures and subsequent mutagenesis analyses explain the requirement for SVBP during tubulin detyrosination, and reveal the basis for the recognition of the C-terminal tyrosine and the acidic α-tubulin tail by VASH1. The VASH1– SVBP–parthenolide structure provides a framework for designing more effective chemical inhibitors of vasohibins, which can be valuable for dissecting their biological functions and may have therapeutic potential.

59 BASIC BIOLOGICAL SCIENCES↗

NiAl–MoO 2 S 2 Nanoparticles: Structural Evolution and Mechanistic Insights into High-Performance Selenium Oxyanion Removal across Diverse pH Conditions

Advancing sorbent materials for the selective removal of toxic oxyanions from water requires synthetic control, tunable chemistry, and an atomic-level understanding of structure–function relationships. Here, we report the synthesis and detailed characterization of NiAl–MoO 2 S 2 , a novel layered double hydroxide (LDH) nanomaterial designed for the efficient sequestration of selenium oxoanions (SeO 3 2– and SeO 4 2– ) from complex aqueous environments. The material is synthesized through a room-temperature ion-exchange process, wherein interlayer NO 3 – anions in NiAl–LDH are replaced with MoO 2 S 2 2– clusters, forming high-surface-area, flower-like nanoparticles. Comprehensive structural analysis using the synchrotron X-ray pair distribution function, X-ray absorption spectroscopy, and X-ray photoelectron spectroscopy reveals a distinct chemical transformation of intercalated [MoO 2 S 2 ] 2– into [Mo 2 O 2 S 6 ] 2– -like clusters, generating redox-active interlayers that drive selenium capture. This tailored interfacial chemistry underpins the material’s exceptional sorption performance, achieving distribution coefficients (K d ) ≥ 10 6 mL/g and maximum capacities of 343 mg/g for SeO 4 2– and 514 mg/g for SeO 3 2– , outperforming state-of-the-art inorganic sorbents. Importantly, NiAl–MoO 2 S 2 maintains high selectivity and capacity across acidic, neutral, and alkaline pH, efficiently removing selenium from ppm to sub-10 ppb trace levels, even in the presence of competing ions typical of natural and industrial waters. The selenium uptake proceeds via reductive precipitation coupled with the oxidation of molybdenum and sulfide within the LDH framework. This study highlights the power of strategic synthetic modification and interlayer functionalization in LDHs to unlock new structural motifs and redox chemistries, offering a scalable route to advanced materials for environmental remediation.

Adsorption↗

Introduction: Posttranslational Protein Modification

Our genome encodes about 20,000 genes, which are transcribed into mRNA and then translated into proteins. Proteins perform numerous biochemical functions and are central for all life processes, including metabolism, signal transduction, transcription, translation, cellular structural integrity, and cell movement. A common feature of all living organisms is the ability to adapt to and survive the changing environment. In order to respond to environmental changes, the proteins of a living organism, or the proteome, must change. New proteins may need to be synthesized to deal with an environmental stress. At the same time, existing proteins can undergo certain chemical modifications, commonly referred to as protein post-translational modifications (PTMs), which introduce structural changes in proteins and thus produce signal responses.

Lin, Hening↗

Enhancement of Nucleate Boiling Heat Flux on Macro/Micro-Structured Surfaces Cooled by Multiple Impinging Jets

An experimental investigation of nucleate boiling heat transfer from modified surfaces cooled by multiple in-line impinging circular jets is reported and found to agree with single jet results. A copper block is heated from the back by two electrical arcs, and cooled on the opposite side by three identical liquid jets of distilled water at subcoolings of 25 C 50 C and 77 C and Freon 113 at 24 C subcooling. Liquid flow rates are held constant at 5, 10, and 15 GPH for each of the three jets with jet velocities ranging from 1.4 m/s to 1 1.2 m/s and jet diameters from 0.95 mm to 2.2 mm. To increase the maximum heat flux (CHF) and heat removal rate, the boiling surface was modified by both macro and micro enhancements. Macro modification consists of machined radial grooves in the boiling surface arranged in an optimally designed pattern to allow better liquid distribution along the surface. These grooves also reduce splashing of liquid droplets, and provide 'channels' to sweep away bubbles. Micro modification was achieved by flame spraying metal powder on the boiling surface, creating a porous, sintered surface. With the addition of both micro and macro structured enhancements, maximum heat flux and nucleate boiling can be enhanced by more than 200%. Examination of each surface modification separately and together indicates that at lower superheats, the micro structure provides the enhanced heat transfer by providing more nucleation sites, while for higher superheats the macro structure allows better liquid distribution and bubble removal. A correlation is presented to account for liquid subcoolings and surface enhancements, in addition to the geometrical and fluid properties previously reported in the literature.

Kugler, Scott Lee↗

Polymorphism and structure of Nd{sub 2}MоO{sub 6} single crystals

The tetragonal and monoclinic modifications of Nd{sub 2}MoO{sub 6} single crystals have been investigated by X-ray diffraction. The analysis has been on laboratory sources (2D CCD diffractometers: Xcalibur S (Shared Research Center, Institute of Crystallography, Russian Academy of Sciences) and BRUKER Smart APEX 2 (Shared Research Center, Institute of General and Inorganic Chemistry, Russian Academy of Sciences)) and on a synchrotron radiation source (ESRF, Grenoble, PILATUS@SNBL diffractometer). Local displacements of all atoms in the oxymolybdate structure have been revealed for the first time using electron density difference maps. Possible violation of the translational periodicity in the distribution of Mo and Nd atoms over types is indirectly confirmed, and statistical disorder of oxygen atoms is revealed. The results of the study confirm the previous suggestion that polymorphic transformations occur in oxymolybdates at a very low rate and, apparently, continuously in a wide temperature range. With an increase in temperature, layers undergo ordering according to the cation type as a result of the phase transition from the monoclinic to the tetragonal phase.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Wing flutter boundary prediction using unsteady Euler aerodynamic method

Modifications to an existing 3D implicit upwind Euler/Navier-Stokes code for the aeroelastic analysis of wings are described. These modifications include the incorporation of a deforming mesh algorithm and the addition of the structural equations of motion for their simultaneous time-integration with the governing flow equations. The paper gives a brief description of these modifications and presents unsteady calculations which check the modifications to the code. Euler flutter results for an isolated 45 deg swept-back wing are compared with experimental data for seven freestream Mach numbers which define the flutter boundary over a range of Mach number from 0.499 to 1.14. These comparisons show good agreement in flutter characteristics for freestream Mach numbers below unity. For freestream Mach numbers above unity, the computed aeroelastic results predict a premature rise in the flutter boundary as compared with the experimental boundary. Steady and unsteady contours of surface Mach number and pressure are included to illustrate the basic flow characteristics of the time-marching flutter calculations and to aid in identifying possible causes for the premature rise in the computational flutter boundary.

Lee-Rausch, Elizabeth M.↗

X-56A Structural Dynamics Ground Testing Overview and Lessons Learned

The X-56A Multi-Utility Technology Testbed (MUTT) is a subscale, fixed-wing aircraft designed for high-risk aeroelastic flight demonstration and research. Structural dynamics ground testing for model validation was especially important for this vehicle because the structural model was directly used in the development of a flight control system with active flutter suppression capabilities. Structural dynamics ground tests of the X-56A MUTT with coupled rigid-body and structural modes provided a unique set of challenges. An overview of the ground vibration test (GVT) and moment of inertia (MOI) test setup and execution is presented. The series of GVTs included the wing by itself attached to a strongback and complete vehicle at two mass conditions: empty and full fuel. Two boundary conditions for the complete-vehicle test were studied: on landing gear and suspended free-free. Pitch MOI tests were performed using a compound pendulum method and repeated with two different pendulum lengths for independent verification. The original soft-support test configuration for the GVT used multiple bungees, resulting in unforeseen coupling interactions between the soft-support bungees and the vehicle structural modes. To resolve this problem, the soft-support test setup underwent multiple iterations. The various GVT configurations and boundary-condition modifications are highlighted and explained. Lessons learned are captured for future consideration when performing structural dynamics testing with similar vehicles.

Chin, Alexander W.↗

AMTS update for STTR

Advanced nuclear reactor systems currently in development include designs that utilize higher energy neutron spectrums, higher temperatures, and corrosive environments that are quite different from the current fleet of nuclear power plants in use today. As a result, new structural materials must be developed and qualified for use to support these advanced systems. For example, research is currently being conducted on a new class of materials known as multi-principle-element-alloys. These alloys show some promise to be able to meet the structural needs of these challenging reactor systems. However, due to the vast available compositional space, and the limited amount of research conducted thus far, Idaho National Laboratory (INL)sought a way to advanced mechanical testing capability for highly irradiated structural materials to increase both throughput and higher fidelity data analysis through incorporation of digital image correlation. The Automated Mechanical Testing System accomplishes these tasks by automating the testing and incorporating digital image correlation to provide higher fidelity data. INL has now received this system and is currently performing functional testing and training. INL is also performing some modifications to the system to allow for installation into a remote shielded enclosure where testing of irradiated structural materials can be performed. After testing, training, and modifications of the system are complete, INL will install the system into a shielded enclosure and begin using the system to test irradiated structural materials.

36 MATERIALS SCIENCE↗

Te Vacancy‐Driven Anomalous Transport in ZrTe 5 and HfTe 5

Abstract The strongly sample‐dependent anomalous transport properties observed in the layered Dirac materials ZrTe 5 and HfTe 5 are known to strongly correlate with the presence of Te vacancies. One phenomenon, a negative longitudinal magnetoresistance (NLMR), is widely speculated to be a signature of broken chiral symmetry. However, the role of electronic structure in the sample dependence of the transport properties of these materials is poorly understood. This prompts the question as to whether the NLMR is a genuine signature of the chiral anomaly in ZrTe 5 and HfTe 5 . In this work, the effect of Te vacancies on the electronic structure of ZrTe 5 and HfTe 5 is investigated via first‐principles calculations. Te vacancies serve two purposes: modification of the cell volume via effective compressive strain and production of local changes to the electronic structure. The reorganization of the electronic structure near the Fermi energy indicates that Te vacancies can rationalize conflicting reports in spectroscopic and transport measurements that have remained elusive in prior first‐principles studies. These results show that Te vacancies contribute, in part, to the anomalous transport properties of ZrTe 5 and HfTe 5 but, critically, do not eliminate the possibility of a genuine manifestation of the chiral anomaly in these materials.

36 MATERIALS SCIENCE↗

Selectivity mechanisms of ion intercalation in Prussian blue analogs

Prussian blue analogs (PBAs) are a family of materials with facile, reversible, and selective ion transport capability for various ions via electrochemical intercalation, owing to their vacancy structure. The large tunable compositional space of PBAs allows for manipulation of intercalation behavior and selectivity by controlling structural vacancy level through choice of transition metal centers and modifications to the synthesis process. However, a lack of understanding of the mechanisms of ion selectivity hinders the material’s design process. Here, for this work, we investigated the origins of ion selectivity using a model PBA, copper hexacyanoferrate, and focused on eight technologically and biologically prominent ions, for which we determined a sequence of selectivity: Rb + > K + > Na + > Ba 2+ > Sr 2+ ≈ Ca 2+ > Mg 2+ > Li + . We provide electrochemical, structural, and redox evidence of strong correlation between the ion identity, the dominant charge-compensating redox, and preferred occupancy site. Specifically, using synchrotron anomalous X-ray diffraction (AXRD), we reveal that monovalent ions exhibit significant association with the corner sites of the unit cell and iron redox, whereas divalent ions display affinity toward the center site with higher ratios of copper redox. Informed by selectivity results, we applied CuHCFe to Li purification and achieved 99.9% purity. Our findings demonstrate an approach to elucidating ion intercalation behavior in order to distinguish and manipulate material properties to optimize separation performance.

Prussian blue analog↗

CASTELO: clustered atom subtypes aided lead optimization—a combined machine learning and molecular modeling method

Background: Drug discovery is a multi-stage process that comprises two costly major steps: pre-clinical research and clinical trials. Among its stages, lead optimization easily consumes more than half of the pre-clinical budget. We propose a combined machine learning and molecular modeling approach that partially automates lead optimization workflow in silico, providing suggestions for modification hot spots. Results: The initial data collection is achieved with physics-based molecular dynamics simulation. Contact matrices are calculated as the preliminary features extracted from the simulations. To take advantage of the temporal information from the simulations, we enhanced contact matrices data with temporal dynamism representation, which are then modeled with unsupervised convolutional variational autoencoder (CVAE). Finally, conventional and CVAE-based clustering methods are compared with metrics to rank the submolecular structures and propose potential candidates for lead optimization. Conclusion: With no need for extensive structure-activity data, our method provides new hints for drug modification hotspots which can be used to improve drug potency and reduce the lead optimization time. It can potentially become a valuable tool for medicinal chemists.

59 BASIC BIOLOGICAL SCIENCES↗

The structural basis of N -acyl-$α$-amino-β-lactone formation catalyzed by a nonribosomal peptide synthetase

Nonribosomal peptide synthetases produce diverse natural products using a multidomain architecture where the growing peptide, attached to an integrated carrier domain, is delivered to neighboring catalytic domains for bond formation and modification. Investigation of these systems can lead to the discovery of new structures, unusual biosynthetic transformations, and to the engineering of catalysts for generating new products. The antimicrobial β-lactone obafluorin is produced nonribosomally from dihydroxybenzoic acid and a β-hydroxy amino acid that cyclizes into the β-lactone during product release. Here we report the structure of the nonribosomal peptide synthetase ObiF1, highlighting the structure of the β-lactone-producing thioesterase domain and an interaction between the C-terminal MbtH-like domain with an upstream adenylation domain. Biochemical assays examine catalytic promiscuity, provide mechanistic insight, and demonstrate utility for generating obafluorin analogs. These results advance our understanding of the structural cycle of nonribosomal peptide synthetases and provide insights into the production of β-lactone natural products.

59 BASIC BIOLOGICAL SCIENCES↗

The structure and evolution of ancient impact basins on Mars

It is pointed out that characteristic styles of degradation and modification of obvious Martian basins make it possible to recognize more subtle expressions. This approach is seen as providing not only additional basins to the existing inventory but also fundamental clues for initial impact basin structure and stratigraphy. It also reveals the long-lasting influence of basin formation on the crust of Mars in spite of extensive erosion and resurfacing. Consideration is given to five clear examples of modified impact basins, and regions around each that have undergone similar processes (fracturing, collapse, channeling) are delineated. These processes among the different basins are then compared, and similar zones of modification are correlated with concentric basin rings. Consideration is then given to the implications of these observations for current models of basin formation and to the role of impact basins in controlling regional tectonics. The results indicate that large multiring impact scars leave a major but sometimes subtle imprint on the geologic structure of stable crustal regions on Mars.

Schultz, P. H.↗

Efficient SnO{sub 2}/CuO/porous silicon nanocomposites structure for NH{sub 3} gas sensing by incorporating CuO nanoparticles

In this paper, a porous silicon (Psi) surface modification process, including the incorporating of pure and CuO mixed SnO{sub 2} within a Psi layer, was investigated. A Psi layer with a pore-like structure prepared via laser-assisted etching process with a laser illumination intensity of (40) mW/cm{sup 2} was employed as a substrate for materialization SnO{sub 2}/CuO/Psi nanocomposites for gas sensing application. Pure SnO{sub 2} and SnO{sub 2}:CuO nanoparticles were synthesized via a chemical spray pyrolysis process on the Psi surface at 350 °C. The materialization of SnO{sub 2}:CuO/Psi nanocomposites were recognized through Field-Emission Scanning Electron Microscopy, X-ray Diffraction, Atomic Force Microscopy, and Energy-dispersive X-ray Analysis. The results displayed that the morphological properties of SnO{sub 2}:CuO nanoparticles were definitely controlled by varying the CuO contents. Different shapes (nearly cubic shape and spherical shape) with various sizes of SnO{sub 2} and SnO{sub 2}:CuO within the Psi surface were achieved by increasing the CuO content. SnO{sub 2}:CuO/Psi nanocomposites, plans, grain size, average surface roughness, homogeneity and specific surface area of SnO{sub 2}:CuO nanoparticles were considerably influenced by CuO content. The lower grain size and higher average surface roughness and specific surface area were attained when the percentage of CuO was about 30% within the structure of 70% SnO{sub 2}:30% CuO, and the performance of the NH{sub 3} gas sensor revealed a short response time with a high sensitivity of (88%).

77 NANOSCIENCE AND NANOTECHNOLOGY↗

Chemical Modifications of Cyclodextrin and Chitosan for Biological and Environmental Applications: Metals and Organic Pollutants Adsorption and Removal

New advances in polymer science and their possible applications have increased in recent years highlighting their important and desired properties. Regarding cyclodextrin and chitosan polymers, they are used in many fields such as agriculture, pharmaceutical, food industry, medicine and in electrochemical sensors. Carefully designed studies are therefore required in order to understand the toxicology, the ways of interaction, biodegradation rate and other parameters of these compounds before using them. This review presents the finding of studies of these polymers applications mainly on drug delivery system and pollutants removal. In addition, modifications are made to enhance their properties and enable some reactions, here it is discussed the most used modification techniques and how they change chitosan and cyclodextrin structure. Although there has been an increase in the number of studies in these areas, further progress is needed to improve understanding of the interaction between the polymers and the compounds of interest, besides their mechanism.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Synthesis and characterization of metastable, 20 nm-sized Pna2{sub 1}-LiCoPO{sub 4} nanospheres

The majority of research activities on LiCoPO{sub 4} are focused on the phospho-olivine (space group Pnma), which is a promising high-voltage cathode material for Li-ion batteries. In contrast, comparably little is known about its metastable Pna2{sub 1} modification. Herein, we present a comprehensive study on the structure–property relationships of 15–20 nm Pna2{sub 1}-LiCoPO{sub 4} nanospheres prepared by a simple microwave-assisted solvothermal process. Unlike previous reports, the results indicate that the compound is non-stoichiometric and shows cation-mixing with Co ions on the Li sites, which provides an explanation for the poor electrochemical performance. Co L{sub 2,3}-edge X-ray absorption spectroscopic data confirm the local tetrahedral symmetry of Co{sup 2+}. Comprehensive studies on the thermal stability using thermogravimetric analysis, differential scanning calorimetry, and in situ powder X-ray diffraction show an exothermic phase transition to olivine Pnma-LiCoPO{sub 4} at 527 °C. The influence of the atmosphere and the particle size on the thermal stability is also investigated. - Graphical abstract: Blue nano-sized Pna2{sub 1}-LiCoPO{sub 4,} featuring tetrahedrally-coordinated Co{sup 2+}, was synthesized in a rapid one-step microwave-assisted solvothermal process. The phase relation between this metastable and the stable polymorph was analyzed and electrochemical properties are discussed. - Highlights: • Preparation of uniform 15–20 nm nanospheres of metastable Pna2{sub 1}-LiCoPO{sub 4} polymorph. • Structure redetermination shows cation-mixing (Co blocking Li sites). • In situ investigation of phase transformation to olivine Pnma-LiCoPO{sub 4} at 527 °C. • Pna2{sub 1}-LiCoPO{sub 4} reemerges as a stable high-temperature phase above 800 °C. • X-ray absorption spectroscopy confirms local tetrahedral symmetry (T{sub d} Co{sup 2+}).

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗