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At least 1,045 records · Page 58

Investigating User Experiences with Data Abstractions on High Performance Computing Systems

Scientific exploration generates expanding volumes of data that commonly require High Performance Computing (HPC) systems to facilitate research. HPC systems are complex ecosystems of hardware and software that frequently are not user friendly. The Usable Data Abstractions (UDA) project set out to build usable software for scientific workflows in HPC environments by undertaking multiple rounds of qualitative user research. Qualitative research investigates how individuals accomplish their work and our interview-based study surfaced a variety of insights about the experiences of working in and with HPC ecosystems. This report examines multiple facets to the experiences of scientists and developers using and supporting HPC systems. We discuss how stakeholders grasp the design and configuration of these systems, the impacts of abstraction layers on their ability to successfully do work, and the varied perceptions of time that shape this work. Examining the adoption of the Cori HPC at NERSC we explore the anticipations and lived experiences of users interacting with this system’s novel storage feature, the Burst Buffer. We present lessons learned from across these insights to illustrate just some of the challenges HPC facilities and their stakeholders need to account for when procuring and supporting these essential scientific resources to ensure their usability and utility to a variety of scientific practices.

97 MATHEMATICS AND COMPUTING↗

Shock compression of fused silica: An impedance matching standard

The properties of silica (SiO 2 ) at extreme conditions have important applications for planetary processes and for high pressure research. Here, we report the results of 125 plate impact shock compression experiments on fused silica spanning 200–1100 GPa using the Z machine at Sandia National Laboratories. Additionally, we present a complementary set of density functional theory based molecular dynamics calculations based on an amorphous reference state that extend the Hugoniot to 2500 GPa. We find good agreement between the Z data, extant laser driven shock compression experiment data, and computational results over most of the pressure range. With these results, fused silica can be used as a new impedance matching standard for shock compression experiments.

54 ENVIRONMENTAL SCIENCES↗

Flame-Vortex Studies to Quantify Markstein Numbers Needed to Model Flame Extinction Limits

This has quantified a database of Markstein numbers for unsteady flames; future work will quantify a database of flame extinction limits for unsteady conditions. Unsteady extinction limits have not been documented previously; both a stretch rate and a residence time must be measured, since extinction requires that the stretch rate be sufficiently large for a sufficiently long residence time. Ma was measured for an inwardly-propagating flame (IPF) that is negatively-stretched under microgravity conditions. Computations also were performed using RUN-1DL to explain the measurements. The Markstein number of an inwardly-propagating flame, for both the microgravity experiment and the computations, is significantly larger than that of an outwardy-propagating flame. The computed profiles of the various species within the flame suggest reasons. Computed hydrogen concentrations build up ahead of the IPF but not the OPF. Understanding was gained by running the computations for both simplified and full-chemistry conditions. Numerical Simulations. To explain the experimental findings, numerical simulations of both inwardly and outwardly propagating spherical flames (with complex chemistry) were generated using the RUN-1DL code, which includes 16 species and 46 reactions.

Driscoll, James F.↗

Computational design of an experimental laser-powered thruster

An extensive numerical experiment, using the developed computer code, was conducted to design an optimized laser-sustained hydrogen plasma thruster. The plasma was sustained using a 30 kW CO2 laser beam operated at 10.6 micrometers focused inside the thruster. The adopted physical model considers two-dimensional compressible Navier-Stokes equations coupled with the laser power absorption process, geometric ray tracing for the laser beam, and the thermodynamically equilibrium (LTE) assumption for the plasma thermophysical and optical properties. A pressure based Navier-Stokes solver using body-fitted coordinate was used to calculate the laser-supported rocket flow which consists of both recirculating and transonic flow regions. The computer code was used to study the behavior of laser-sustained plasmas within a pipe over a wide range of forced convection and optical arrangements before it was applied to the thruster design, and these theoretical calculations agree well with existing experimental results. Several different throat size thrusters operated at 150 and 300 kPa chamber pressure were evaluated in the numerical experiment. It is found that the thruster performance (vacuum specific impulse) is highly dependent on the operating conditions, and that an adequately designed laser-supported thruster can have a specific impulse around 1500 sec. The heat loading on the wall of the calculated thrusters were also estimated, and it is comparable to heat loading on the conventional chemical rocket. It was also found that the specific impulse of the calculated thrusters can be reduced by 200 secs due to the finite chemical reaction rate.

Jeng, San-Mou↗

Accelerated modulus-based matrix splitting iteration method for a class of nonlinear complementarity problems

In this paper, we reformulate a class of nonlinear complementarity problems as the implicit fixed-point equations. We demonstrate accelerated modulus-based matrix splitting iteration method. We show their convergence by assuming that the system matrix is positive definite or the splitting of the system matrix are H{sub +}-compatible splitting and discuss the choice of the optimal parameter. Furthermore, we give two-step accelerated modulus-based matrix splitting iteration method, which may achieve higher computing efficiency. Numerical experiments are presented to show the effectiveness of the method.

97 MATHEMATICS AND COMPUTING↗

Optical vortex manipulation for topological quantum computation

Topological quantum computation based on Majorana bound states may enable new paths to fault-tolerant quantum computing. Several recent experiments have suggested that the vortex cores of topological superconductors, such as iron-based superconductors, may host Majorana bound states at zero energy. However, quantum computation with these zero-energy vortex bound states requires precise and fast manipulation of individual vortices, which is difficult to do in a scalable manner. To address this issue, in this study we propose a control scheme based on local heating via, for example, scanning optical microscopy to braid vortex-bound Majorana zero modes in a two-dimensional topological superconductor. First, we derive the conditions required for transporting a single vortex between two defects in the superconducting material by trapping it with a hot spot generated by local optical heating. Equipped with critical conditions for the vortex motion, we then establish the ideal material properties for vortex braiding and describe how transition errors resulting from finite speed and/or temperature can be minimized. Our work paves the way toward optical or microscopic control of zero-energy vortex bound states in two-dimensional topological superconductors.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Dual-Purpose Canister Filling Demonstration Project Progress Report

This report discusses the progress made at the Oak Ridge National Laboratory to support direct disposal of dual-purpose canisters (DPCs). Acceptable filler materials should demonstrate that the probability of criticality in DPCs during the disposal timeframe is below the probability threshold for inclusion in a repository performance assessment. This effort, which will ultimately result in a full-scale demonstration, includes computational fluid dynamics (CFD) modelling developed to gauge the filling process and to uncover any unforeseen issues. Filling simulations of the lower region (mouse holes) of a prototypic DPC show successfully simulate filling of the void space inside the canister and a smooth, even progression of the liquid level. Flow through a pipe that is similar to the drainpipe in a DPC is being investigated separately to gain valuable insight of the flow regime inside a pipe. Three physical experiments validating the computational filling model have been completed using surrogate liquids. One experiment using molten metal has been completed and the results demonstrate adequate filling of the canister void spaces. Although the scale experiment observed some void spaces related to shrinkage of the metal during cooling, the volume filled is expected to be sufficient to meet the purpose of moderator exclusion. Further experiments will scale up the geometry, moving towards a full-sized DPC demonstration, and provide a more rigorous investigation of candidate filler materials.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

DUNE Software and Computing Challenges

The DUNE experiment will begin running in the late 2020's. The goals of the experiment include 1) studying neutrino oscillations using a beam of neutrinos from Fermilab in Illinois to the Sanford Underground Research Facility, 2) studying astrophysical neutrino sources and rare processes and 3) understanding the physics of neutrino interactions in matter. The DUNE Far Detector, consisting of four 17 kt LArTPC modules, will produce "events" rang-ing in size from 6 GBs to more than 100 TBs, posing unique challenges for DUNE software and computing. The data processing algorithms, particularly for raw data, drive the requirements for the future DUNE software framework documented here.

97 MATHEMATICS AND COMPUTING↗

Uncovering Where Compensating Errors Could Hide in ENDF/B-VIII.0

Unconstrained physics spaces between two or more nuclear data observables in a library occur when their values can be simultaneously adjusted without violating the uncertainties in either differential information or simulations of relevant integral experiments. Differential data are often too imprecise to fully bound all nuclear data observables of interest for application simulations. Integral data are simulated with combinations of nuclear data so that an error in one observable may be hidden by a counterbalancing error in another. In this manner compensating errors may lurk within nuclear data libraries and these errors have the potential to undermine the predictive power of neutron transport simulations, particularly in situations where there is no conclusive validation experiment that resembles the application of interest. The EUCLID project (Experiments Underpinned by Computational Learning for Improvements in Nuclear Data) developed a preliminary workflow to identify these unconstrained physics spaces by bringing together results from a large collection of integral experiments with their simulated counter-parts as well as differential information that have a one-to-one correspondence to nuclear data. This wealth of information is processed by machine learning tools for subsequent refinement by human experts. Here, we show how the EUCLID work-flow is executed by applying it first to 239 Pu and then to 9 Be nuclear data in ENDF/B-VIII.0.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Risk-Averse Bi-Level Stochastic Network Interdiction Model for Cyber-Security Risk Management

Security of cyber networks is crucial; recent severe cyber-attacks have had a devastating effect on many large organizations. The attack graph, which maps the potential attack paths of a cyber network, is a popular tool for analyzing cyber system vulnerability. In this study, we propose a bi-level stochastic network interdiction model on an attack graph to enable a risk-averse, resource constrained cyber network defender to optimally deploy security countermeasures that protect against attackers with an uncertain budget. This risk- averse conditional-value-at-risk (CVaR) model minimizes a weighted sum of the expected maximum loss over all scenarios and the expected maximum loss from the most damaging attack scenarios. We develop a customized constraint and column generation algorithm to solve our model as well as several acceleration techniques to improve the computational efficiency. Numerical experiments demonstrate that the acceleration techniques enable the solution of relatively large problems within a reasonable amount of time: applying all the acceleration techniques also reduces the average computation time of the basic algorithm by 71% for 100-node graphs. Using metrics called mean-risk value of stochastic solution and value of risk-aversion, computational results suggest that our stochastic risk-averse model significantly outperforms deterministic and risk-neutral models when 1) the distribution of attacker budget is heavy-right-tailed and 2) the defender is highly risk-averse.

Bhuiyan, Tanveer H.↗

Parallel Finite Element Domain Decomposition for Structural/Acoustic Analysis

A domain decomposition (DD) formulation for solving sparse linear systems of equations resulting from finite element analysis is presented. The formulation incorporates mixed direct and iterative equation solving strategics and other novel algorithmic ideas that are optimized to take advantage of sparsity and exploit modern computer architecture, such as memory and parallel computing. The most time consuming part of the formulation is identified and the critical roles of direct sparse and iterative solvers within the framework of the formulation are discussed. Experiments on several computer platforms using several complex test matrices are conducted using software based on the formulation. Small-scale structural examples are used to validate thc steps in the formulation and large-scale (l,000,000+ unknowns) duct acoustic examples are used to evaluate the ORIGIN 2000 processors, and a duster of 6 PCs (running under the Windows environment). Statistics show that the formulation is efficient in both sequential and parallel computing environmental and that the formulation is significantly faster and consumes less memory than that based on one of the best available commercialized parallel sparse solvers.

Nguyen, Duc T.↗

Curifactory: A research experiment manager

Curifactory is a command line tool and framework for organizing Python experiment code, configuration parameters, and results. It is an opinionated and lightweight approach to workflow management infrastructure and is primarily intended to support researchers conducting experiments on one machine. This software was developed to support the reproducibility of results for several data science projects in the Nuclear Nonproliferation Division at Oak Ridge National Laboratory. Curifactory is intended to be a general framework and is not specific to machine learning or data science. It can aid in any field in which experiments are primarily computation-based studies and can be implemented in Python (e.g., high-energy physics, astronomy, computational chemistry). Here, the design emphasizes the automated caching of intermediate data analysis artifacts to speed up development involving computationally intensive tasks. It also allows for data provenance and experiment reproduction. Individual experiment runs are tracked through logs and their output reports, and entire copies of a run with all cached data and metadata can be exported for others to run using Curifactory on another machine. Curifactory experiments can either be integrated into a project from the beginning or can be written on top of an existing codebase without needing significant modification. A few important views of the Curifactory library can be seen in Figure 1.

97 MATHEMATICS AND COMPUTING↗

A simulation-based fault injection experiment to evaluate self-test diagnostics for a fault-tolerant computer

The design and results of a fault injection experiment conducted in the Airlab facility at NASA-Langley using a logic network simulator are described. An attempt was made to determine the effectiveness of the diagnostic self-test sequences used to detect failures in the communicator/interstage (C/I) of a fault-tolerant processor (FTP). Identification of the undetected faults in the C/I Status Register logic resulted in changes in the diagnostic test sequences implemented for the FTP.

Baker, Robert L.↗

Generators and the (Accelerated) Future

With the High Luminosity LHC coming online in the near future, event generators will need to provide very large event samples to match the experimental precision. Currently, the estimated cost to generate these events exceeds the computing budget of the LHC experiments. To address these issues, the computing efficiency of event generators need to be improved. Many different approaches are being taken to achieve this goal. I will cover the ongoing work on implementing event generators on the GPUs, machine learning the matrix element, machine learning the phase space, and minimizing the number of negative weight events.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

A Holistic Algorithmic Approach to Improving Accuracy, Robustness, and Computational Efficiency for Atmospheric Dynamics

Atmospheric weather and climate models must perform simulations very quickly to be useful. Therefore, modelers have traditionally focused on reducing computations as much as possible. However, in our new era of increasingly compute-capable hardware, data movement is now the prohibiting expense. This study examines the computational benefits of a new algorithmic approach to modeling atmospheric dynamics on scales relevant to weather and climate simulation. Rather than minimizing computations, this new approach considers the larger problem more holistically, including spatial accuracy, temporal accuracy, robustness (i.e., oscillations), on-node efficiency, and internode data transfers together at once. Numerical experiments demonstrate how computations can be strategically increased to simultaneously address each of these constraints while reducing data movement to adapt to modern accelerated hardware. The new algorithm can achieve at times up to 80% peak floating point throughput in single precision on the Nvidia Tesla V100 GPU, where the traditional approach is shown to only achieve single-digit floating point efficiency. Further, the new algorithm is twice as fast as a standard Runge--Kutta time integrator, and high-order accuracy with Weighted Essentially Non-Oscillatory (WENO) limiting came at less than 30% additional runtime cost on a GPU, thus increasing the accuracy per degree of freedom.

54 ENVIRONMENTAL SCIENCES↗

Pre-exascale accelerated application development: The ORNL Summit experience

High-performance computing (HPC) increasingly relies on heterogeneous architectures to achieve higher performance. In the Oak Ridge Leadership Facility (OLCF), Oak Ridge, TN, USA, this trend continues as its latest supercomputer, Summit, entered production in early 2019. The combination of IBM POWER9 CPU and NVIDIA V100 GPU, along with a fast NVLink2 interconnect and other latest technologies, pushes system performance to a new height and breaks the exascale barrier by certain measures. Due to Summit's powerful GPUs and much higher GPU–CPU ratio, offloading to accelerators becomes a requirement for any application, which intends to effectively use the system. To facilitate navigating a complex landscape of competing heterogeneous architectures, a collection of applications from a wide spectrum of scientific domains is selected for early adoption on Summit. In this article, the experience and lessons learned are summarized, in the hope of providing useful guidance to address new programming challenges, such as scalability, performance portability, and software maintainability, for future application development efforts on heterogeneous HPC systems.

97 MATHEMATICS AND COMPUTING↗