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At least 1,063 records · Page 59

METABOLIC: high-throughput profiling of microbial genomes for functional traits, metabolism, biogeochemistry, and community-scale functional networks

Background Advances in microbiome science are being driven in large part due to our ability to study and infer microbial ecology from genomes reconstructed from mixed microbial communities using metagenomics and single-cell genomics. Such omics-based techniques allow us to read genomic blueprints of microorganisms, decipher their functional capacities and activities, and reconstruct their roles in biogeochemical processes. Currently available tools for analyses of genomic data can annotate and depict metabolic functions to some extent; however, no standardized approaches are currently available for the comprehensive characterization of metabolic predictions, metabolite exchanges, microbial interactions, and microbial contributions to biogeochemical cycling. Results We present METABOLIC (METabolic And BiogeOchemistry anaLyses In miCrobes), a scalable software to advance microbial ecology and biogeochemistry studies using genomes at the resolution of individual organisms and/or microbial communities. The genome-scale workflow includes annotation of microbial genomes, motif validation of biochemically validated conserved protein residues, metabolic pathway analyses, and calculation of contributions to individual biogeochemical transformations and cycles. The community-scale workflow supplements genome-scale analyses with determination of genome abundance in the microbiome, potential microbial metabolic handoffs and metabolite exchange, reconstruction of functional networks, and determination of microbial contributions to biogeochemical cycles. METABOLIC can take input genomes from isolates, metagenome-assembled genomes, or single-cell genomes. Results are presented in the form of tables for metabolism and a variety of visualizations including biogeochemical cycling potential, representation of sequential metabolic transformations, community-scale microbial functional networks using a newly defined metric “MW-score” (metabolic weight score), and metabolic Sankey diagrams. METABOLIC takes ~ 3 h with 40 CPU threads to process ~ 100 genomes and corresponding metagenomic reads within which the most compute-demanding part of hmmsearch takes ~ 45 min, while it takes ~ 5 h to complete hmmsearch for ~ 3600 genomes. Tests of accuracy, robustness, and consistency suggest METABOLIC provides better performance compared to other software and online servers. To highlight the utility and versatility of METABOLIC, we demonstrate its capabilities on diverse metagenomic datasets from the marine subsurface, terrestrial subsurface, meadow soil, deep sea, freshwater lakes, wastewater, and the human gut. Conclusion METABOLIC enables the consistent and reproducible study of microbial community ecology and biogeochemistry using a foundation of genome-informed microbial metabolism, and will advance the integration of uncultivated organisms into metabolic and biogeochemical models. METABOLIC is written in Perl and R and is freely available under GPLv3 at https://github.com/AnantharamanLab/METABOLIC.

59 BASIC BIOLOGICAL SCIENCES↗

Risso's dolphins plan foraging dives

ABSTRACT Humans remember the past and use that information to plan future actions. Lab experiments that test memory for the location of food show that animals have a similar capability to act in anticipation of future needs, but less work has been done on animals foraging in the wild. We hypothesized that planning abilities are critical and common in breath-hold divers who adjust each dive to forage on prey varying in quality, location and predictability within constraints of limited oxygen availability. We equipped Risso's dolphins with sound-and-motion recording tags to reveal where they focus their attention through their externally observable echolocation and how they fine tune search strategies in response to expected and observed prey distribution. The information from the dolphins was integrated with synoptic prey data obtained from echosounders on an underwater vehicle. At the start of the dives, whales adjusted their echolocation inspection ranges in ways that suggest planning to forage at a particular depth. Once entering a productive prey layer, dolphins reduced their search range comparable to the scale of patches within the layer, suggesting that they were using echolocation to select prey within the patch. On ascent, their search range increased, indicating that they decided to stop foraging within that layer and started searching for prey in shallower layers. Information about prey, learned throughout the dive, was used to plan foraging in the next dive. Our results demonstrate that planning for future dives is modulated by spatial memory derived from multi-modal prey sampling (echoic, visual and capture) during earlier dives.

Arranz, Patricia↗

Sodium Freezing and Remelting Tests in FY 2018

In FY 2017 and FY 2018, a total of thirteen tests were successfully performed in the Sodium Freezing and Remelting test facility. Each new test was carefully designed based upon the results and findings of the previous test to investigate the effects of different factors on the sodium freezing phenomena, including dissolved Ar cover gas versus vacuum, test section cooling rate during freezing, different freezing patterns (e.g., from the free surfaces inward toward the center versus from the center toward the free surfaces), and Ar cover gas pressure. The freezing results were found to depend upon a combination of phenomena. As more tests were conducted and lessons learned, the conduct of the tests improved. In particular, the last three experiments, Tests 11 through 13, may be singled out as providing representative data under well controlled conditions. The maximum stresses arising from sodium freezing are measured to be quite mild. In the tests, a maximum strain change of 60 radial micro strains was measured, equivalent to a stress/negative pressure of 77 psi. This mild maximum stress is thought to reflect the low yield stress of solid sodium near the freezing temperature. Evidence for yielding of solid sodium is provided by the visual observation of a depression in the frozen sodium free surface inside of the sodium reservoir in one test. It is thought that contraction of sodium in the test section during freezing pulled downward on the frozen sodium at the free surface creating the depression. The authors are not aware of any data for the yield stress of solid sodium or the stress versus strain behavior of solid sodium (sodium is not a structural material). It is thus not possible to directly compare with the solid sodium yield strength. However, stress versus strain data at different temperatures up to the freezing temperature are available for solid lithium which is also a alkali metal and has a low yield strength similar to the maximum stresses determined from the Sodium Freezing and Remelting tests providing support for the interpretation of the results in terms of yielding of solid sodium. This is a good result for Sodium-Cooled Fast Reactors and sodium facilities. The maximum stress due to frozen sodium pulling inward upon a structural wall wetted by sodium and to which the sodium adheres will be limited by the low sodium yield stress. Argon has a significant solubility in sodium. Cavitation due to nucleation of dissolved argon can offset the effects of sodium thermal contraction and alleviate the formation of stress/negative pressure. This is also a good result for Sodium-Cooled Fast Reactors and sodium facilities that operate with an argon cover gas. In the tests, it was found that due to the cavitation, the maximum measured strain change during sodium freezing was limited to 10 axial micro strains, or equivalently 55 psi of negative pressure.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

Comparison of Structural Relaxation Behavior in As-Cast and Pre-Annealed Zr-Based Bulk Metallic Glasses Just below Glass Transition

In this paper, the α-relaxation of pre-annealed Zr 55 Cu 30 Ni 5 Al 10 bulk metallic glasses (BMGs) was compared with that of as-cast Zr-based BMGs including Zr 55 Cu 30 Ni 5 Al 10 . The α-relaxation was investigated by volume relaxation. The relaxation behavior was well described by a stretched exponential relaxation function, Φ (t) ≈ exp [ - (t/τ α ) β α ], with the isothermal relaxation time, τ α , and the Kohlrausch exponent, β α . The β α exhibited the strong temperature dependence for the pre-annealed BMG, while the weak temperature dependence was visualized for the as-cast BMG similar to the dynamic relaxation. The τ α ’s were modified by Moynihan and Narayanaswamy-Tool-Moynihan methods that reduce the difference in the thermal history of sample. Finally, as a result, the relaxation kinetics in the glass resembled that of a liquid deduced from the behavior of viscosity in the supercooled liquid.

36 MATERIALS SCIENCE↗

In Situ Soft X-ray Spectromicroscopy of Early Tricalcium Silicate Hydration

The understanding and control of early hydration of tricalcium silicate (C3S) is of great importance to cement science and concrete technology. However, traditional characterization methods are incapable of providing morphological and spectroscopic information about in situ hydration at the nanoscale. Using soft X-ray spectromicroscopy, we report the changes in morphology and molecular structure of C3S at an early stage of hydration. In situ C3S hydration in a wet cell, beginning with induction (~1 h) and acceleration (~4 h) periods of up to ~8 h, was studied and compared with ex situ measurements in the deceleration period after 15 h of curing. Analysis of the near-edge X-ray absorption fine structure showed that the Ca binding energy and energy splitting of C3S changed rapidly in the early age of hydration and exhibited values similar to calcium silicate hydrate (C–S–H). The formation of C–S–H nanoseeds in the C3S solution and the development of a fibrillar C–S–H morphology on the C3S surface were visualized. Following this, silicate polymerization accompanied by C–S–H precipitation produced chemical shifts in the peaks of the main Si K edge and in multiple scattering. However, the silicate polymerization process did not significantly affect the Ca binding energy of C–S–H.

36 MATERIALS SCIENCE↗

Data-Driven Computation of Probabilistic Marching Cubes for Efficient Visualization of Level-Set Uncertainty

Uncertainty visualization is an important emerging research area. Being able to visualize data uncertainty can help scientists improve trust in analysis and decision-making. However, visualizing uncertainty can add computational overhead, which can hinder the efficiency of analysis. In this paper, we propose novel data-driven techniques to reduce the computational requirements of the probabilistic marching cubes (PMC) algorithm. PMC is an uncertainty visualization technique that studies how uncertainty in data affects level-set positions. However, the algorithm relies on expensive Monte Carlo (MC) sampling for the multivariate Gaussian uncertainty model because no closed-form solution exists for the integration of multivariate Gaussian. In this work, we propose the eigenvalue decomposition and adaptive probability model techniques that reduce the amount of MC sampling in the original PMC algorithm and hence speed up the computations. Our proposed methods produce results that show negligible differences compared with the original PMC algorithm demonstrated through metrics, including root mean squared error, maximum error, and difference images. We demonstrate the performance and accuracy evaluations of our data-driven methods through experiments on synthetic and real datasets.

Athawale, Tushar↗

Predictive process mapping for laser powder bed fusion: A review of existing analytical solutions

One of the main challenges in the laser powder bed fusion (LPBF) process is making dense and defect-free components. These porosity defects are dependent upon the melt pool geometry and the processing conditions. Power-velocity (PV) processing maps can aid in visualizing the effects of LPBF processing variables and mapping different defect regimes such as lack-of-fusion, under-melting, balling, and keyholing. This work presents an assessment of existing analytical equations and models that provide an estimate of the melt pool geometry as a function of material properties. The melt pool equations are then combined with defect criteria to provide a quick approximation of the PV processing maps for a variety of materials. Finally, the predictions of these processing maps are compared with experimental data from the literature. Here, the predictive processing maps can be computed quickly and can be coupled with dimensionless numbers and high-throughput (HT) experiments for validation. The present work provides a boundary framework for designing the optimal processing parameters for new metals and alloys based on existing analytical solutions.

36 MATERIALS SCIENCE↗

AN ENHANCED SPECTROSCOPIC CENSUS OF THE ORION NEBULA CLUSTER

We report new spectral types or spectral classification constraints for over 600 stars in the Orion Nebula Cluster (ONC) based on medium resolution (R ≈ 1500-2000) red optical spectra acquired using the Palomar 200'' and Kitt Peak 3.5 m telescopes. Spectral types were initially estimated for F, G, and early K stars from atomic line indices while for late K and M stars, which constitute the majority of our sample, indices involving TiO and VO bands were used. To ensure proper classification, particularly for reddened, veiled, or nebula-contaminated stars, all spectra were then visually examined for type verification or refinement. We provide an updated spectral type table that supersedes previous work, increasing the percentage of optically visible ONC stars with spectral type information from 68% to 90%. However, for many objects, repeated observations have failed to yield spectral types primarily due to the challenges of adequate sky subtraction against a bright and spatially variable nebular background. The scatter between our new and our previously determined spectral types is approximately two spectral sub-classes. We also compare our grating spectroscopy results with classification based on narrow-band TiO filter photometry, finding similar scatter. While the challenges of working in the ONC may explain much of the spread, we highlight several stars showing significant and unexplained bona fide spectral variations in observations taken several years apart; these and similar cases could be due to a combination of accretion and extinction changes. Finally, nearly 20% of ONC stars exhibit obvious Ca II triplet emission indicative of strong accretion.

79 ASTRONOMY AND ASTROPHYSICS↗

Testing light-traces-mass in Hubble Frontier Fields Cluster MACS-J0416.1-2403

Here, we reconstruct the projected mass distribution of a massive merging Hubble Frontier Fields cluster MACSJ0416 using the genetic algorithm based free-form technique called Grale. The reconstructions are constrained by 149 lensed images identified by Jauzac et al. using HFF data. No information about cluster galaxies or light is used, which makes our reconstruction unique in this regard. Using visual inspection of the maps, as well as galaxy-mass correlation functions we conclude that overall light does follow mass. Furthermore, the fact that brighter galaxies are more strongly clustered with mass is an important confirmation of the standard biasing scenario in galaxy clusters. On the smallest scales, approximately less than a few arcseconds, the resolution afforded by 149 images is still not sufficient to confirm or rule out galaxy-mass offsets of the kind observed in ACO 3827. We also compare the mass maps of MACSJ0416 obtained by three different groups: Grale, and two parametric Lenstool reconstructions from the CATS and Sharon/Johnson teams. Overall, the three agree well; one interesting discrepancy between Grale and Lenstool galaxy-mass correlation functions occurs on scales of tens of kpc and may suggest that cluster galaxies are more biased tracers of mass than parametric methods generally assume.

79 ASTRONOMY AND ASTROPHYSICS↗

SU-E-J-197: Investigation of Microsoft Kinect 2.0 Depth Resolution for Patient Motion Tracking

Purpose: Investigate the use of the Kinect 2.0 for patient motion tracking during radiotherapy by studying spatial and depth resolution capabilities. Methods: Using code written in C#, depth map data was abstracted from the Kinect to create an initial depth map template indicative of the initial position of an object to be compared to the depth map of the object over time. To test this process, simple setup was created in which two objects were imaged: a 40 cm × 40 cm board covered in non reflective material and a 15 cm × 26 cm textbook with a slightly reflective, glossy cover. Each object, imaged and measured separately, was placed on a movable platform with object to camera distance measured. The object was then moved a specified amount to ascertain whether the Kinect’s depth camera would visualize the difference in position of the object. Results: Initial investigations have shown the Kinect depth resolution is dependent on the object to camera distance. Measurements indicate that movements as small as 1 mm can be visualized for objects as close as 50 cm away. This depth resolution decreases linearly with object to camera distance. At 4 m, the depth resolution had decreased to observe a minimum movement of 1 cm. Conclusion: The improved resolution and advanced hardware of the Kinect 2.0 allows for increase of depth resolution over the Kinect 1.0. Although obvious that the depth resolution should decrease with increasing distance from an object given the decrease in number of pixels representing said object, the depth resolution at large distances indicates its usefulness in a clinical setting.

60 APPLIED LIFE SCIENCES↗

New insights into the shock tube ignition of H 2 /O 2 at low to moderate temperatures using high-speed end-wall imaging

In this study, the effects of pre-ignition energy releases on H 2 —O 2 mixtures were explored in a shock tube with the aid of high-speed imaging and conventional pressure and emission diagnostics. Ignition delay times and time-resolved camera image sequences were taken behind the reflected shockwaves for two hydrogen mixtures. High concentration experiments spanned temperatures between 858 and 1035 K and pressures between 2.74 and 3.91 atm for a 15% H 2 \18% O 2 \Ar mixture. Low concentration data were also taken at temperatures between 960 and 1131 K and pressures between 3.09 and 5.44 atm for a 4% H 2 \2% O 2 \Ar mixture. These two model mixtures were chosen as they were the focus of recent shock tube work conducted in the literature. Experiments were performed in both a clean and dirty shock tube facility; however, no deviations in ignition delay times between the two types of tests were apparent. The high-concentration mixture (15%H 2 \18%O 2 \Ar) experienced energy releases in the form of deflagration flames followed by local detonations at temperatures < 1000 K. Measured ignition delay times were compared to predictions by three chemical kinetic mechanisms: GRI-Mech 3.0, AramcoMech 2.0, and Burke's et al. (2012) mechanisms. It was found that when proper thermodynamic assumptions are used, all mechanisms were able to accurately predict the experiments with superior performance from the well-validated AramcoMech 2.0 and Burke et al. mechanisms. Current work provides better guidance in using available literature hydrogen shock tube measurements, which spanned more than 50 years but were conducted without the aid of high-speed visualization of the ignition process, and their modeling using combustion kinetic mechanisms.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

[18F]-Fluoromisonidazole Positron Emission Tomography/Computed Tomography Visualization of Tumor Hypoxia in Patients With Chordoma of the Mobile and Sacrococcygeal Spine

Purpose: To investigate [18F]-fluoromisonidazole positron emission tomography/computed tomography (FMISO-PET/CT) detection of targetable hypoxic subvolumes (HSVs) in chordoma of the mobile or sacrococcygeal spine. Methods and Materials: A prospective, pilot study of 20 patients with primary or locally recurrent chordoma of the mobile or sacrococcygeal spine treated with proton or combined proton/photon radiation therapy (RT) with or without surgery was completed. The FMISO-PET/CT was performed before RT and after 19.8-34.2 GyRBE (relative biologic effectiveness). Gross tumor volumes were delineated and HSVs defined including voxels with standardized uptake values ≥1.4 times the muscle mean. Clinical characteristics and treatments received were compared between patients with and without HSVs. Results: The FMISO-PET/CT detected HSVs in 12 of 20 patients (60%). Baseline and interval HSV spatial concordance varied (0%-94%). Eight HSVs were sufficiently large (≥5 cm{sup 3}) to potentially allow an intensity modulated proton therapy boost. Patients with HSVs had significantly larger gross tumor volumes (median 410.0 cm{sup 3} vs 63.4 cm{sup 3}; P=.02) and were significantly more likely to have stage T2 tumors (5 of 12 vs 0 of 8; P=.04). After a median follow-up of 1.8 years (range, 0.2-4.4 years), a local recurrence has yet to be observed. Three patients developed metastatic disease, 2 with HSVs. Conclusions: Detection of targetable HSVs by FMISO-PET/CT within patients undergoing RT with or without surgery for treatment of chordoma of the mobile and sacrococcygeal spine is feasible. The study's inability to attribute interval HSV changes to treatment, rapidly changing hypoxic physiology, or imaging inconsistencies is a limitation. Further study of double-baseline FMISO-PET/CT and hypoxia-directed RT dose escalation, particularly in patients at high risk for local recurrence, is warranted.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

Visualizing the out-of-plane electronic dispersions in an intercalated transition metal dichalcogenide

Layered transition metal dichalcogenides have a rich phase diagram and they feature two-dimensionality in numerous physical properties. Co 1/3 NbS 2 is one of the newest members of this family where Co atoms are intercalated into the van der Waals gaps between NbS 2 layers. Here, we study the three-dimensional electronic band structure of Co 1/3 NbS 2 using both surface and bulk sensitive angle-resolved photoemission spectroscopy. We show that the electronic bands do not fit into the rigid band shift picture after the Co intercalation. Instead, Co 1/3 NbS 2 displays a different orbital character near the Fermi level compared to the pristine NbS 2 compound and has a clear band dispersion in the k z direction despite its layered structure. Our photoemission study demonstrates the out-of-plane electronic correlations introduced by the Co intercalation, thus offering a different perspective on this compound. Finally, we propose how Fermi level tuning could lead to exotic phases such as spin density wave instability.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Markerless tracking of small lung tumors for stereotactic radiotherapy

Purpose: (1) To validate retrospective markerless tracking software for small lung tumors by comparing tracked motion in 4-dimensional planning computed tomography (4DCT) derived kV projection images and known tumor motion in the same 4DCT. (2) To evaluate variability of tumor motion using kV projection images from cone-beam computed tomography (CBCT) scans acquired on different days. Methods: Nonclinical tumor tracking software (TTS) used a normalized cross correlation algorithm to track the tumor on enhanced kV projection images (e.g., from a CBCT scan). The reference dataset consisted of digitally reconstructed radiographs (DRRs) from one phase of a planning 4DCT. TTS matches two in-plane coordinates and obtains the out-of-plane coordinate by triangulating with match results from other projections. (1) To validate TTS, tracking results were compared with known 4DCT tumor motion for two patients (A and B). Projection images (1 image/1°) were digitally reconstructed for each 4DCT phase. From these, kV projection series were composed simulating full breathing cycles every 20° of gantry rotation [breathing period = 20°/(6°/s) = 3.33 s]. Reference templates were 360 “tumor enhanced” DRRs from the 4DCT expiration phase. TTS-derived tumor motion was compared to known tumor motion on 4DCT. (2) For five patients, TTS-assessed motion during clinical CBCT acquisition was compared with motion on the planning 4DCT, and the motion component in the Y (cranio–caudal)-direction was compared with the motion of an external marker box (RPM, real-time position management). Results: (1) Validation results: TTS for case A (tumor 6.2 cm{sup 3}, 32 mm axial diameter) over 360° showed mean motion X (medial–lateral) = 3.4, Y = 11.5, and Z (ventral–dorsal) = 4.9 mm (1 SD < 1.0 mm). Corresponding 4DCT motion was X = 3.1, Y = 11.3, and Z = 5.1 mm. Correlation coefficients between TTS tumor motion and displacement of the tumor’s center of mass (CoM) on 4DCT were 0.64, 0.96, and 0.82 (X, Y, and Z, respectively). For case B (4.1 cm{sup 3}, 20 mm diameter), due to temporarily decreased tumor visibility preventing TTS from resolving the tumor, robust tracking data were only available between angles 300°–40° and 120°–220°. Mean motion according to TTS was X = 2.0, Y = 7.7, and Z = 8.2 mm (1 SD < 0.9 mm). Tumor motion on 4DCT was X = 1.8, Y = 7.6, and Z = 9.5 mm and correlation coefficients between TTS motion and CoM displacement were 0.59, 0.95, and 0.93 (X, Y, and Z, respectively). (2) Clinical results: TTS revealed a mean intrafraction variation in tumor motion in Y-direction of >2.0 mm (1 SD) in four of five patients. In addition, clinical tumor motion amplitude differed from that seen on planning 4DCT. Internal and external structures that create abrupt density change (e.g., table-top edge, interface between lung/mediastinum and lung/heart) were observed to prevent 360° tracking of the tumor. Correlation coefficients between TTS motion in the Y-direction and the RPM signal (22 observations) ranged from 0.78 to 0.96. In 2D, 241 TTS matches at end-inspiration and end-expiration were visually validated: mean difference was 0.8 mm (SD = 0.7) for both. Conclusions: TTS can track small lung tumors if these are visible in kV projections. A 4DCT dataset can be used to validate kV tracking of moving targets. TTS and 4DCT displacement agreed to within 2 mm. TTS and RPM motion were closely associated but tumor motion during CBCT can vary from the planning 4DCT.

60 APPLIED LIFE SCIENCES↗

FREDA: A Web Application for the Processing, Analysis, and Visualization of Fourier‐Transform Mass Spectrometry Data

The high-resolution measurement capability of Fourier-transform mass spectrometry (FT-MS) has made it a necessity for exploring the molecular composition of complex organic mixtures, like soil, plant, aquatic, and petroleum samples. This demand has driven a need for informatics tools to explore and analyze FT-MS data in a robust and reproducible manner. FREDA is an interactive web application developed to enable spectrometrists to format, process, and explore their FT-MS data without the need for statistical programming expertise. FREDA was built to explore outputs from a molecular identification tool, like CoreMS, and provide a suite of methods to filter data, compute chemical properties of peaks, statistically compare samples and groups of samples, conduct exploratory data analysis, and download the results with a report detailing all steps conducted. To demonstrate the utility of FREDA, an example analysis was conducted using FT-MS data from a soil microbiology study of samples collected in two different soil depths at the Sphagnum bog forest north of Grand Rapids, Minnesota. Differences between the two depths are observed using Kendrick, Gibbs free energy, and van Krevelen plots. G-tests are used to quantify a significant difference between the groups. All analyses and plotting are conducted using only the FREDA application. FREDA is an open-source and readily available web application that allows users to explore and make statistically valid conclusions about their FT-MS data. The application is available online (https://map.emsl.pnnl.gov/app/freda) with a tutorial web series (https://youtu.be/k5HLE2kNSBY?si=yB6sGoyvzxrFf5MP) and freely accessible code on Github (https://github.com/EMSL-Computing/FREDA).

47 OTHER INSTRUMENTATION↗

Domain wall motion across microstructural features in polycrystalline ferroelectric films

This paper describes the effect of microstructural features such as grain boundaries and triple points on the pinning of domain wall motion in perovskite Pb(Zr 0.52 Ti 0.48 )O 3 (PZT) films on polycrystalline SrRuO 3 /SrTiO 3 substrates. Here, spatial variability in the collective domain wall dynamics was assessed using non-linearity mapping via Band Excitation Piezoresponse Force Microscopy (BE-PFM). Collocating the non-linearity maps with triple point locations (as visualized by EBSD) allowed for exploration of the effects that local microstructure (e.g., grain boundary) have on domain wall motion. It was found that the extrinsic behavior varied with both the misorientation angle and the proximity to the grain boundary. The width of influence of individual grain boundaries on the motion of domain walls was a function of the character of the grain boundary; random grain boundaries exhibit deeper minima in α d /d 33,initial and larger widths of influence (up to 905 nm) compared to coincident site lattice (CSL) boundaries (up to 572 nm). Additionally, triple points containing larger numbers of random boundaries exhibited non-Rayleigh behavior to greater distances, suggesting that the triple point provides either a deep potential minimum or a region where domain wall motion is unfavorable.

36 MATERIALS SCIENCE↗

Simultaneous and Constrained Calibration of Multiple Hyperspectral Images Through a New Generalized Empirical Line Model

The empirical line (EL) calibration method is commonly used for atmospheric correction of remotely sensed spectral images and recovery of surface reflectance. The current EL-based methods are applicable to calibrate only single images. Therefore, the use of the EL calibration is impractical for imaging campaigns, where many (partially overlapped) images are acquired to cover a large area. In addition, the EL results are unconstrained and an undesired reflectance with negative values or larger than 100% can be obtained. In this paper, we use the standard EL model to formulate a new generalized empirical line (GEL) model. Based on the GEL, we present a novel method for simultaneous and constrained calibration of multiple images. This new method allows for calibration through multiple image constrained empirical line (MIcEL) and three additional calibration modes. Given a set of images, we use the available ground targets and automatically extracted tie points between overlapping images to calibrate all the images in the set simultaneously. Quantitative and visual assessments of the proposed method were carried out relatively to the off-the-shelf method quick atmospheric correction (QUAC), using real hyperspectral images and field measurements. The results clearly show the superiority of MIcEL with respect to the minimization of the difference between the reflectance values of the same object in different overlapping images. An assessment of the absolute accuracy, with respect to 11 field measurement points, shows that the accuracy of MIcEL, with an average mean absolute error (MAE) of ~11%, is comparable with respect to the QUAC.

47 OTHER INSTRUMENTATION↗

Small-Signal Modeling and Design of Phase-Locked Loops Using Harmonic Signal-Flow Graphs

This report introduces signal-flow graphs for linear time-periodic systems to streamline and visually describe the frequency-domain modeling of complex phase-locked loop (PLL) systems used in grid-connected converters. Small-signal modeling using the proposed graphs is demonstrated for two commonly used single-phase PLL structures: SOGI-PLL and Park-PLL. Loop-gain models are developed for these PLLs to evaluate how an orthogonal signal generator (OSG), which is required in single-phase PLLs using the synchronous reference frame (SRF) architecture, modifies the PLL loop-gain compared to that of a three-phase SRF-PLL, which does not require an OSG. It is shown that the OSG in the SOGI-PLL and Park-PLL introduces significant phase-lag in the PLL loop-gain, limiting the maximum bandwidth for which either PLL can be designed. Slow frequency adaptation (SFA) of OSG is proposed as a solution to mitigate the influence of the OSG dynamics on the PLL loop-gain. Experimental results are presented to validate the developed loop-gain models and show that the proposed SFA-SOGI-PLL and SFA-Park-PLL have improved transient performance, they do not suffer from the bandwidth limit, and they also preserve the steady-state performance of the standard SOGI-PLL and Park-PLL.

24 POWER TRANSMISSION AND DISTRIBUTION↗