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At least 1,063 records · Page 59

Soil Moisture Retrieval with Airborne PALS Instrument over Agricultural Areas in SMAPVEX16

NASA's SMAP (Soil Moisture Active Passive) calibration and validation program revealed that the soil moisture products are experiencing difficulties in meeting the mission requirements in certain agricultural areas. Therefore, the mission organized airborne field experiments at two core validation sites to investigate these anomalies. The SMAP Validation Experiment 2016 included airborne observations with the PALS (Passive Active L-band Sensor) instrument and intensive ground sampling. The goal of the PALS measurements are to investigate the soil moisture retrieval algorithm formulation and parameterization under the varying (spatially and temporally) conditions of the agricultural domains and to obtain high resolution soil moisture maps within the SMAP pixels. In this paper the soil moisture retrieval using the PALS brightness temperature observations in SMAPVEX16 is presented.

SMAPVEX15↗

Double Diffusion Maps and their Latent Harmonics for scientific computations in latent space

In this work, we introduce a data-driven approach to building reduced dynamical models through manifold learning; the reduced latent space is discovered using Diffusion Maps (a manifold learning technique) on time series data. A second round of Diffusion Maps on those latent coordinates allows the approximation of the reduced dynamical models. This second round enables mapping the latent space coordinates back to the full ambient space (what is called lifting); it also enables the approximation of full state functions of interest in terms of the reduced coordinates. In our work, we develop and test three different reduced numerical simulation methodologies, either through pre-tabulation in the latent space and integration on the fly or by going back and forth between the ambient space and the latent space. The data-driven latent space simulation results, based on the three different approaches, are validated through (a) the latent space observation of the full simulation through the Nyström Extension formula, or through (b) lifting the reduced trajectory back to the full ambient space, via Latent Harmonics. Latent space modeling often involves additional regularization to favor certain properties of the space over others, and the mapping back to the ambient space is then constructed mostly independently from these properties; here, we use the same data-driven approach to construct the latent space and then map back to the ambient space.

97 MATHEMATICS AND COMPUTING↗

An Atomic View of Cation Diffusion Pathways from Single‐Crystal Topochemical Transformations

Abstract The diffusion pathways of Li‐ions as they traverse cathode structures in the course of insertion reactions underpin many questions fundamental to the functionality of Li‐ion batteries. Much current knowledge derives from computational models or the imaging of lithiation behavior at larger length scales; however, it remains difficult to experimentally image Li‐ion diffusion at the atomistic level. Here, by using topochemical Li‐ion insertion and extraction to induce single‐crystal‐to‐single‐crystal transformations in a tunnel‐structured V 2 O 5 polymorph, coupled with operando powder X‐ray diffraction, we leverage single‐crystal X‐ray diffraction to identify the sequence of lattice interstitial sites preferred by Li‐ions to high depths of discharge, and use electron density maps to create a snapshot of ion diffusion in a metastable phase. Our methods enable the atomistic imaging of Li‐ions in this cathode material in kinetic states and provide an experimentally validated angstrom‐level 3D picture of atomic pathways thus far only conjectured through DFT calculations.

Handy, Joseph V.↗

Persistent urinary metabolic signatures in children with type 1 diabetes

There are an estimated 3.7 million people with undiagnosed type 1 diabetes (T1D), living primarily in poor areas of the globe. Therefore, there is a need for non-invasive, affordable tests to provide accurate diagnosis despite the time post-disease onset and fasting state. Here, we studied persistent urinary T1D biomarkers that can be used to develop such tests. Here, we analyzed the urine metabolomes of three independent cohorts of samples collected within 48 h (from Indiana University), and 1 year (from University of Colorado) and 1–10 years (6 years in average) (from Children’s National Medical Center) post-diagnosis. Samples were submitted to gas chromatography-mass spectrometry and machine learning an0alyses to determine diagnostic metabolite panels. The data were also mapped into a metabolic pathway to understand persistently regulated processes in T1D. Seven metabolites showed consistent increases in all three cohorts: d-glucose, d-mannose, myo-inositol, 3-hydroxyisobutyric acid, gluconolactone, d-gluconic acid, and d-glucuronic acid. A combination of machine learning analysis and metabolite ratios as biomarker candidates diagnosed T1D with high sensitivity and specificity across different cohorts and times. Mapping the regulated metabolites into a pathway showed impairment in glycolysis and overflow of glucose towards other pathways in subjects with T1D that was persistent over time. We identified and cross-validated highly specific and sensitive urinary biomarkers. This opens opportunities to develop affordable, robust, and non-invasive tests. The results also show that most of the biomarkers were signatures of dysregulated glucose metabolism.

Type 1 diabetes↗

Identifying Important Ions and Positions in Mass Spectrometry Imaging Data Using CUR Matrix Decompositions

Mass spectrometry imaging enables label-free, high-resolution spatial mapping of the chemical composition of complex, biological samples. Typical experiments require selecting ions and/or positions from the images: ions for fragmentation studies to identify keystone compounds and positions for follow up validation measurements using microdissection or other orthogonal techniques. Unfortunately, with modern imaging machines, these must be selected from an overwhelming amount of raw data. Existing techniques to reduce the volume of data, the most popular of which are principle component analysis and non-negative matrix factorization, have the disadvantage that they return difficult-to-interpret linear combinations of actual data elements. In this work, we show that CX and CUR matrix decompositions can be used directly to address this selection need. CX and CUR matrix decompositions use empirical statistical leverage scores of the input data to provide provably good low-rank approximations of the measured data that are expressed in terms of actual ions and actual positions, as opposed to difficult-to-interpret eigenions and eigenpositions. We show that this leads to effective prioritization of information for both ions and positions. In particular, important ions can be found either by using the leverage scores as a ranking function and using a deterministic greedy selection algorithm or by using the leverage scores as an importance sampling distribution and using a random sampling algorithm; however, selection of important positions from the original matrix performed significantly better when they were chosen with the random sampling algorithm. Also, we show that 20 ions or 40 locations can be used to reconstruct the original matrix to a tolerance of 17% error for a widely studied image of brain lipids; and we provide a scalable implementation of this method that is applicable for analysis of the raw data where there are often more than a million rows and/or columns, which is larger than SVD-based low-rank approximation methods can handle. Lastly, these results introduce the concept of CX/CUR matrix factorizations to mass spectrometry imaging, describing their utility and illustrating principled algorithmic approaches to deal with the overwhelming amount of data generated by modern mass spectrometry imaging.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

In-situ observation of trapped carriers in organic metal halide perovskite films with ultra-fast temporal and ultra-high energetic resolutions

Abstract We in-situ observe the ultrafast dynamics of trapped carriers in organic methyl ammonium lead halide perovskite thin films by ultrafast photocurrent spectroscopy with a sub-25 picosecond time resolution. Upon ultrafast laser excitation, trapped carriers follow a phonon assisted tunneling mechanism and a hopping transport mechanism along ultra-shallow to shallow trap states ranging from 1.72–11.51 millielectronvolts and is demonstrated by time-dependent and independent activation energies. Using temperature as an energetic ruler, we map trap states with ultra-high energy resolution down to < 0.01 millielectronvolt. In addition to carrier mobility of ~4 cm 2 V −1 s −1 and lifetime of ~1 nanosecond, we validate the above transport mechanisms by highlighting trap state dynamics, including trapping rates, de-trapping rates and trap properties, such as trap density, trap levels, and capture-cross sections. In this work we establish a foundation for trap dynamics in high defect-tolerant perovskites with ultra-fast temporal and ultra-high energetic resolution.

36 MATERIALS SCIENCE↗

Treating random sequential addition via the replica method

While many physical processes are non-equilibrium in nature, the theory and modeling of such phenomena lag behind theoretical treatments of equilibrium systems. The diversity of powerful theoretical tools available to describe equilibrium systems has inspired strategies that map non-equilibrium systems onto equivalent equilibrium analogs so that interrogation with standard statistical mechanical approaches is possible. In this work, we revisit the mapping from the non-equilibrium random sequential addition process onto an equilibrium multi-component mixture via the replica method, allowing for theoretical predictions of non-equilibrium structural quantities. We validate the above approach by comparing the theoretical predictions to numerical simulations of random sequential addition.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Attosecond Two-Photon Interferometry for Doubly Excited States of Helium

We show that the correlation dynamics in coherently excited doubly excited resonances of helium can be followed in real time by two-photon interferometry. This approach promises to map the evolution of the two-electron wave packet onto experimentally easily accessible noncoincident single-electron spectra. We analyze the interferometric signal in terms of a semianalytical model which is validated by a numerical solution of the time-dependent two-electron Schroedinger equation in its full dimensionality.

74 ATOMIC AND MOLECULAR PHYSICS↗

SU-F-R-36: Validating Quantitative Radiomic Texture Features for Oncologic PET: A Digital Phantom Study

Purpose: Radiomic texture features derived from the oncologic PET have recently been brought under intense investigation within the context of patient stratification and treatment outcome prediction in a variety of cancer types; however, their validity has not yet been examined. This work is aimed to validate radiomic PET texture metrics through the use of realistic simulations in the ground truth setting. Methods: Simulation of FDG-PET was conducted by applying the Zubal phantom as an attenuation map to the SimSET software package that employs Monte Carlo techniques to model the physical process of emission imaging. A total of 15 irregularly-shaped lesions featuring heterogeneous activity distribution were simulated. For each simulated lesion, 28 texture features in relation to the intensity histograms (GLIH), grey-level co-occurrence matrices (GLCOM), neighborhood difference matrices (GLNDM), and zone size matrices (GLZSM) were evaluated and compared with their respective values extracted from the ground truth activity map. Results: In reference to the values from the ground truth images, texture parameters appearing on the simulated data varied with a range of 0.73–3026.2% for GLIH-based, 0.02–100.1% for GLCOM-based, 1.11–173.8% for GLNDM-based, and 0.35–66.3% for GLZSM-based. For majority of the examined texture metrics (16/28), their values on the simulated data differed significantly from those from the ground truth images (P-value ranges from <0.0001 to 0.04). Features not exhibiting significant difference comprised of GLIH-based standard deviation, GLCO-based energy and entropy, GLND-based coarseness and contrast, and GLZS-based low gray-level zone emphasis, high gray-level zone emphasis, short zone low gray-level emphasis, long zone low gray-level emphasis, long zone high gray-level emphasis, and zone size nonuniformity. Conclusion: The extent to which PET imaging disturbs texture appearance is feature-dependent and could be substantial. It is thus advised that use of PET texture parameters for predictive and prognostic measurements in oncologic setting awaits further systematic and critical evaluation.

60 APPLIED LIFE SCIENCES↗

Estimating Aboveground Biomass in Tropical Forests: Field Methods and Error Analysis for the Calibration of Remote Sensing Observations

Mapping and monitoring of forest carbon stocks across large areas in the tropics will necessarily rely on remote sensing approaches, which in turn depend on field estimates of biomass for calibration and validation purposes. Here, we used field plot data collected in a tropical moist forest in the central Amazon to gain a better understanding of the uncertainty associated with plot-level biomass estimates obtained specifically for the calibration of remote sensing measurements. In addition to accounting for sources of error that would be normally expected in conventional biomass estimates (e.g., measurement and allometric errors), we examined two sources of uncertainty that are specific to the calibration process and should be taken into account in most remote sensing studies: the error resulting from spatial disagreement between field and remote sensing measurements (i.e., co-location error), and the error introduced when accounting for temporal differences in data acquisition. We found that the overall uncertainty in the field biomass was typically 25% for both secondary and primary forests, but ranged from 16 to 53%. Co-location and temporal errors accounted for a large fraction of the total variance (>65%) and were identified as important targets for reducing uncertainty in studies relating tropical forest biomass to remotely sensed data. Although measurement and allometric errors were relatively unimportant when considered alone, combined they accounted for roughly 30% of the total variance on average and should not be ignored. Lastly, our results suggest that a thorough understanding of the sources of error associated with field-measured plot-level biomass estimates in tropical forests is critical to determine confidence in remote sensing estimates of carbon stocks and fluxes, and to develop strategies for reducing the overall uncertainty of remote sensing approaches.

54 ENVIRONMENTAL SCIENCES↗

Adaptive Multi-Agent Systems for Constrained Optimization

Product Distribution (PD) theory is a new framework for analyzing and controlling distributed systems. Here we demonstrate its use for distributed stochastic optimization. First we review one motivation of PD theory, as the information-theoretic extension of conventional full-rationality game theory to the case of bounded rational agents. In this extension the equilibrium of the game is the optimizer of a Lagrangian of the (probability distribution of) the joint state of the agents. When the game in question is a team game with constraints, that equilibrium optimizes the expected value of the team game utility, subject to those constraints. The updating of the Lagrange parameters in the Lagrangian can be viewed as a form of automated annealing, that focuses the MAS more and more on the optimal pure strategy. This provides a simple way to map the solution of any constrained optimization problem onto the equilibrium of a Multi-Agent System (MAS). We present computer experiments involving both the Queen s problem and K-SAT validating the predictions of PD theory and its use for off-the-shelf distributed adaptive optimization.

Macready, William↗

An Efficient Ray-Tracing Method for Determining Terrain Intercepts in EDL Simulations

The calculation of a ray's intercept from an arbitrary point in space to a prescribed surface is a common task in computer simulations. The arbitrary point often represents an object that is moving according to the simulation, while the prescribed surface is fixed in a defined frame. For detailed simulations, this surface becomes complex, taking the form of real-world objects such as mountains, craters or valleys which require more advanced methods to accurately calculate a ray's intercept location. Incorporation of these complex surfaces has commonly been implemented in graphics systems that utilize highly optimized graphics processing units to analyze such features. This paper proposes a simplified method that does not require computationally intensive graphics solutions, but rather an optimized ray-tracing method for an assumed terrain dataset. This approach was developed for the Mars Science Laboratory mission which landed on the complex terrain of Gale Crater. First, this paper begins with a discussion of the simulation used to implement the model and the applicability of finding surface intercepts with respect to atmosphere modeling, altitude determination, radar modeling, and contact forces influencing vehicle dynamics. Next, the derivation and assumptions of the intercept finding method are presented. Key assumptions are noted making the routines specific to only certain types of surface data sets that are equidistantly spaced in longitude and latitude. The derivation of the method relies on ray-tracing, requiring discussion on the formulation of the ray with respect to the terrain datasets. Further discussion includes techniques for ray initialization in order to optimize the intercept search. Then, the model implementation for various new applications in the simulation are demonstrated. Finally, a validation of the accuracy is presented along with the corresponding data sets used in the validation. A performance summary of the method will be shown using the analysis from the Mars Science Laboratory's terminal descent sensing model. Alternate uses will also be shown for determining horizon maps and orbiter set times.

Shidner, Jeremy D.↗

Human Reliability Analysis for Small Modular Reactors

Because no human reliability analysis (HRA) method was specifically developed for small modular reactors (SMRs), the application of any current HRA method to SMRs represents tradeoffs. A first- generation HRA method like THERP provides clearly defined activity types, but these activity types do not map to the human-system interface or concept of operations confronting SMR operators. A second- generation HRA method like ATHEANA is flexible enough to be used for SMR applications, but there is currently insufficient guidance for the analyst, requiring considerably more first-of-a-kind analyses and extensive SMR expertise in order to complete a quality HRA. Although no current HRA method is optimized to SMRs, it is possible to use existing HRA methods to identify errors, incorporate them as human failure events in the probabilistic risk assessment (PRA), and quantify them. In this paper, we provided preliminary guidance to assist the human reliability analyst and reviewer in understanding how to apply current HRA methods to the domain of SMRs. While it is possible to perform a satisfactory HRA using existing HRA methods, ultimately it is desirable to formally incorporate SMR considerations into the methods. This may require the development of new HRA methods. More practicably, existing methods need to be adapted to incorporate SMRs. Such adaptations may take the form of guidance on the complex mapping between conventional light water reactors and small modular reactors. While many behaviors and activities are shared between current plants and SMRs, the methods must adapt if they are to perform a valid and accurate analysis of plant personnel performance in SMRs.

99 GENERAL AND MISCELLANEOUS↗

SU-E-T-456: Development of An EPID-Based Output Measurement and Dosimetric Verification Tool for Electron Beam Therapy

Purpose: To develop an efficient and robust method for output and absolute dosimetric measurements of electron beam therapy by using a high spatialresolution and high frame-rate amorphous silicon flat-panel electronic portal imaging device (EPID). Methods: A previously-established EPID dosimetry system was extended to measure the output factors of electron beams of various sizes and their planar dose distributions at reference depths. Specific EPID responses to different electron energies were derived from Monte Carlo (MC) simulations to de-convolve the EPID raw images to the incident electron fluence map. To reconstruct the 2D water-based dose distribution map at reference depths for different energies, the fluence map was further convolved with a MC simulated pencil beam kernel. Different energies of 6, 9, 12, 16, and 20 MeV from a Varian C-series linac were tested. Standard square fields ranging from 2×2 to 15×15 cm{sup 2} were measured and validated against film/ion chamber measurements. Small fields of different patient cases with irregular cutout shapes were also tested. Results: The EPIDmeasured output factors for 2×2, 3×3, 6×6, and 10×10 cm{sup 2} fields with all electron energies agree with the film/ion chamber data within 2.7%. The average discrepancy between EPID and film/ion chamber measurements was 1.4%. The differences for the three patient cases were 0.1%, 2.1%, and 1.6%. Deliveries with different monitor units were tested and the results exhibited good linearity. Measurements with different dose rate showed that the dose rate dependence was less than 1%. Using the proposed method, 2D absolute dose maps were created from the EPID raw images and the results were consistent with film measurements. Conclusion: The efficient data readout and portability of the newly developed EPID system provides an efficient and accurate solution for electron beam therapy. It addresses an important unmet clinical need for a fast and reliable small field output factor measurement.

07 ISOTOPE AND RADIATION SOURCES↗

Validation of emission-line galaxies target selection algorithms for the Dark Energy Spectroscopic Instrument using the MMT Binospec

ABSTRACT The forthcoming Dark Energy Spectroscopic Instrument (DESI) experiment plans to measure the effects of dark energy on the expansion of the Universe and create a 3D map of the Universe using galaxies up to z ∼ 1.6 and QSOs up to z ∼ 3.5. In order to create this map, DESI will obtain spectroscopic redshifts of over 30 million objects; among them, a majority are [O ii] emitting star-forming galaxies known as emission-line galaxies (ELGs). These ELG targets will be pre-selected by drawing a selection region on the g − r versus r − z colour–colour plot, where high-redshift ELGs form a separate locus from the lower redshift ELGs and interlopers. In this paper, we study the efficiency of three ELG target selection algorithms – the Final Design Report (FDR) cut based on the DEEP2 photometry, Number Density Modelling (NDM) and Random Forest – to determine how the combination of these three algorithms can be best used to yield a simple selection boundary that will be best suited to meet DESI’s science goals. To do this, we selected 17 small patches in the DESI footprint where we run the three target selection algorithms to pre-select ELGs based on their photometry. We observed the pre-selected ELGs using the MMT Binospec, which is similar in functionality to the DESI instrument, to obtain their spectroscopic redshifts and fluxes of 1054 ELGs. By analysing the redshift and fluxing distribution of these galaxies, we find that although NDM performed the best, simple changes in the FDR definition would also yield sufficient performance.

79 ASTRONOMY AND ASTROPHYSICS↗

Upgrading Limiting Peak-Power Analysis Techniques with Modern Validation and Uncertainty Quantification for the Advanced Test Reactor

Here, this work demonstrates the acceptability of the 2D deterministic transport code, HELIOS, to replace the legacy diffusion code, PDQ, for computing the peak-power performance parameters of the Advanced Test Reactor (ATR). The 95% Confidence Rule, commonly used in the commercial reactor sector, is explored to develop the so-called “reliability factors” which provide statistical confidence that the peak-power limits within the hottest location along a fuel plate, referred to as the hot-stripe, will not be exceeded. Additionally, an alternative “legacy” methodology was explored that attempts to mimic the exact PDQ analysis process used for defining the peak-power limits. The legacy methodology, involves interpolating power between regions at azimuthal boundaries subtending the regions of interest. In order to apply the 95% Confidence Rule, a statistically significant calculation-to-measurement bias must first be established. Unlike the commercial world where thousands of power observations can be collected every cycle using on-line flux mapping instrumentation, the ATR power distribution must be measured during “depressurized” zero-power measurements using fission wires in polyethylene wands. In 2012, fission wire activation data was collected during a flux run in the Advanced Test Reactor – Critical facility. Also to improve statistical validity, archival data from ATR zero power flux runs from 1977, 1986, and 1994 were digitized from scanned reports and used to create new benchmark models. Borrowing from least-squares adjustment methods commonly used for neutron activation spectroscopy, adjusted fission wire powers were calculated for all four datasets. The mean and standard deviation of the bias between a priori calculated and adjusted wire-powers was then taken as the bias and uncertainty used in the 95% Confidence Rule.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

Reynolds-Averaged Turbulence Modeling Using Deep Learning with Local Flow Features: An Empirical Approach

Reynolds-Averaged Navier-Stoke (RANS) models offer an alternative avenue in predicting flow characteristics when the corresponding experiments are difficult to achieve due to geometry complexity, limited budget, or knowledge. RANS models require the knowledge of subgrid scale physics to solve conservation equations for mass, energy, and momentum. Mechanistic turbulence models, such as k-epsilon, are generally evaluated and calibrated for specific flow conditions with various degrees of uncertainty. These models have limited capability to assimilate a substantial amount of data due to model form constraints. Meanwhile, deep learning (DL) has been proven to be universal approximators with the potential to assimilate available, relevant, and adequately evaluated data. Moreover, deep neural networks (DNNs) can create surrogate models without knowing function forms. Such a data-driven approach can be used in updating fluid models based on observations as opposed to hard-wiring models with precalibrated correlations. The paper presents progress in applying DNNs to model Reynolds stress using two machine learning (ML) frameworks. A novel flow feature coverage mapping is proposed to quantify the physics coverage of DL-based closures. It can be used to examine the sufficiency of training data and input flow features for data-driven turbulence models. The case of a backward-facing step is formulated to demonstrate that not only can DNNs discover underlying correlation behind fluid data but also they can be implemented in RANS to predict flow characteristics without numerical stability issues. Finally, the presented research is a crucial stepping-stone toward the data-driven turbulence modeling, which potentially benefits the design of data-driven experiments that can be used to validate fluid models with ML-based fluid closures.

42 ENGINEERING↗