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At least 1,063 records · Page 59

Cryo-STEM Tomography with Inpainting

Traditionally, microscopists have worked with the Nyquist-Shannon theory of sampling, which states that to be able to reconstruct the image fully it needs to be sampled at a rate of at least twice the highest spatial frequency in the image. This sampling rate assumes that the image is sampled at regular intervals and that every pixel contains information that is crucial for the image (it even assumes that noise is important). Images in general, and especially low dose S/TEM images, contain significantly less information than can be encoded by a grid of pixels (which is why image compression works). Mathematically speaking, the image data has a low dimensional or sparse representation. Through the application of compressive sensing methods [1,2,3] this representation can be found using pre-designed measurements that are usually random for implementation simplicity. These measurements and the compressive sensing reconstruction algorithms have the added benefit of reducing noise. This reconstruction approach can be extended into higher dimensions, whereby the random sampling in each 2-D image can be extended into: a sequence of tomographic projections (i.e. tilt images); a sequence of video frames (i.e. incorporating temporal resolution and dynamics); spectral resolution (i.e. energy filtering an image to see the distribution of elements); and ptychography (i.e. sampling a full diffraction image at each location in a 2-D grid across the sample). This approach has been employed experimentally for materials science samples requiring low-dose imaging [2], and can be readily applied to biological samples. Figure 1 shows the resolution possible in a complex biological system, mouse pancreatic islet beta cells [4], when tomogram slices are reconstructed using subsampling. Reducing the number of pixels (1/6 pix and 1/3*1/3) shows minimal degradation compared to the reconstructions using all pixels (all data and 1/3 tilt). Although subsampling 1/6 of the tilts (1/6 of overall dose) degrades the reconstruction to the point that the cellular structures cannot be identified. Using 1/3 of both the pixels and the tilts provides a high quality image at 1/9 the overall dose even for this most basic and rapid demonstration of the CS methods. Figure 2 demonstrates the theoretical tomogram reconstruction quality (vertical axis) as undersampling (horizontal axis) is increased; we examined subsampling pixels and tilt-angles individually and a combined approach in which both pixels and tilts are sub-sampled. Note that subsampling pixels maintains high quality reconstructions (solid lines). Using the inpainting algorithm to obtain tomograms can automatically reduce the dose applied to the system by an order of magnitude. Perhaps the best way to understand the impact is to consider that by using inpainting (and with minimal hardware changes), a sample that can normally withstand a dose of ~10 e/Å2 can potentially be imaged with an “equivalent quality” to a dose level of 103 e/Å2. To put this in perspective, this is approaching the dose level used for the most advanced images, in terms of spatial resolution, for inorganic systems. While there are issues for biological specimens beyond dose (structural complexity being the most important one), this sampling approach allows the methods that are traditionally used for materials science to be applied to biological systems [5]. References: [1] A Stevens, H Yang, L Carin et al. Microscopy 63(1), (2014), pp. 41. [2] L Kovarik, A Stevens, A Liyu et al. Appl. Phys. Lett. 109, 164102 (2016) [3] A Stevens, L Kovarik, P Abellan et al. Adv. Structural and Chemical Imaging 1(10), (2015), pp. 1. [4] MD Guay, W Czaja, MA Aronova et al. Scientific Reports 6, 27614 (2016) [5] Supported by the Chemical Imaging, Signature Discovery, and Analytics in Motion Initiatives at PNNL. PNNL is operated by Battelle Memorial Inst. for the US DOE; contract DE-AC05-76RL01830.

Stevens, Andrew↗

Grains and Strains from Cepstral Analysis of 4D-STEM Nano-Diffraction Datasets

We report the availability of fast, high dynamic range pixel array detectors makes scanning convergent beam electron diffraction (CBED) a powerful tool for rapid, spatially resolved characterization of lattice structure over a wide range of length scales. However, to extract useful structural information from the large 4-dimensional datasets, especially for complex, 3D specimens, we must confront challenges with CBED intensity variations due to crystal mistilts and multiple scattering as well as challenges with precisely localizing diffracted disk centers.

36 MATERIALS SCIENCE↗

STEM Study of Structure and Local Short-Range Orders in the Fe 5- x GeTe 2 Crystals with Ferromagnetism Near Room Temperature

Van der Waals (vdW) bonded materials have historically attracted intense attention, due to their promise for advanced electronic and optical functionalities. Recently, magnetically-active vdW materials have been recognized as an important class of materials for realizing new physics and functionalities. Of the magnetic vdW materials, ferromagnetic Fe 3 GeTe 2 has garnered significant attention for its high Curie temperature T C ~230 K. Recently, a Fe 5-x GeTe 2 compound with thicker Fe-Ge slabs and stronger magnetism has been successfully obtained. As viewed by bulk diffraction, the material has a relatively large unit cell and contains intrinsic disorder. The nature of the local structure is anticipated to impact the Curie temperature, which ranges from 270–310K depending on processing conditions. As such, an atomic-scale probe of the local structures and compositions is essential for understanding the intrinsic magnetism in this vdW material.

36 MATERIALS SCIENCE↗

Micromanipulation, FIB, STEM, EDS and EELS of UF 4 Particles

A key challenge with nuclear safeguards environmental sampling is chemical and structure characterization of particulate material post release due to environmentally induced chemical changes. Here, uranium tetrafluoride (UF 4 ) is an important intermediate in the upstream and downstream chemical conversion process of uranium feedstock and metal production processes used in nuclear fuel production; however, minimal published research exists relating to UF 4 hydrolysis.

38 RADIATION CHEMISTRY, RADIOCHEMISTRY, AND NUCLEA↗