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DOE OSTI2016

Effects of Pore and Cage Topology on the Thermodynamics of n -Alkane Adsorption at Brønsted Protons in Zeolites at High Temperature

Here, Monte Carlo simulations are used to systematically investigate the effects of structural topology on the thermodynamics of n -alkanes adsorbed at Brønsted protons in zeolites having one-dimensional channel systems. In zeolites without cages, the enthalpy and entropy of adsorption (Δ H ads-H + and Δ S ads-H + ) at fixed pore-limiting diameter (PLD) generally increase (become less negative) as the ratio of the minimum to maximum channel diameter decreases, and are lowest when this ratio equals 1 (corresponding to approximately circular cross sections). The results of a change in diameter ratio on the free energy of adsorption (Δ A ads-H + ) is weak due to the changes in Δ H ads-H + and TΔ S ads-H + largely cancel. The addition of cages having a largest-cavity diameter (LCD) greater than the PLD increases both Δ H ads-H + and Δ S ads-H + . Replacing channels with cages of the same diameter does not change Δ S ads-H + significantly when the PLD is similar to the alkane length but decreases both Δ H ads-H + and Δ A ads-H + because of the greater surface area of cages relative to channels. The selectivity to adsorption via a central C-C bond vs a terminal bond when cages are absent is smallest for PLDs near the alkane length and, when cages are present, is even lower when the LCD exceeds the alkane length. This effect is attributed to more rotation of the alkane in cages vs channels. The results show that Δ A ads-H + at 773 K can be tuned by manipulating a characteristic dimension (LCD, PLD) and topology (e.g., adding cages) simultaneously, in order to circumvent the compensating changes in TΔ S ads-H + and Δ H ads-H + that occur upon changing only one structural parameter.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2019

Structure and regulation of ZCCHC4 in m 6 A-methylation of 28S rRNA

N 6 -methyladenosine (m 6 A) modification provides an important epitranscriptomic mechanism that critically regulates RNA metabolism and function. However, how m 6 A writers attain substrate specificities remains unclear. We report the 3.1 Å-resolution crystal structure of human CCHC zinc finger-containing protein ZCCHC4, a 28S rRNA-specific m 6 A methyltransferase, bound to S-adenosyl-L-homocysteine. The methyltransferase (MTase) domain of ZCCHC4 is packed against N-terminal GRF-type and C2H2 zinc finger domains and a Cterminal CCHC domain, creating an integrated RNA-binding surface. Strikingly, the MTase domain adopts an autoinhibitory conformation, with a self-occluded catalytic site and a fullyclosed cofactor pocket. Mutational and enzymatic analyses further substantiate the molecular basis for ZCCHC4-RNA recognition and a role of the stem-loop structure within substrate in governing the substrate specificity. Overall, this study unveils unique structural and enzymatic characteristics of ZCCHC4, distinctive from what was seen with the METTL family of m 6 A writers, providing the mechanistic basis for ZCCHC4 modulation of m 6 A RNA methylation.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2015

The La-related protein 1-specific domain repurposes HEAT-like repeats to directly bind a 5'TOP sequence

La-related protein 1 (LARP1) regulates the stability of many mRNAs. These include 5'TOPs, mTOR-kinase responsive mRNAs with pyrimidine-rich 5' UTRs, which encode ribosomal proteins and translation factors. We determined that the highly conserved LARP1-specific C-terminal DM15 region of human LARP1 directly binds a 5'TOP sequence. The crystal structure of this DM15 region refined to 1.86 Å resolution has three structurally related and evolutionarily conserved helix-turn-helix modules within each monomer. These motifs resemble HEAT repeats, ubiquitous helical protein-binding structures, but their sequences are inconsistent with consensus sequences of known HEAT modules, suggesting this structure has been repurposed for RNA interactions. A putative mTORC1-recognition sequence sits within a flexible loop C-terminal to these repeats. We also present modelling of pyrimidine-rich single-stranded RNA onto the highly conserved surface of the DM15 region. Ultimately, these studies lay the foundation necessary for proceeding toward a structural mechanism by which LARP1 links mTOR signalling to ribosome biogenesis.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2021

Structural analysis of the PTEN:P-Rex2 signaling complex reveals how cancer-associated mutations coordinate to hyperactivate Rac1

The dual-specificity phosphatase PTEN functions as a tumor suppressor by hydrolyzing PI(3,4,5)P 3 to PI(4,5)P 2 to inhibit PI3K-AKT signaling and cellular proliferation. P-Rex2 is a guanine nucleotide exchange factor for Rho GTPases and can be activated by Gβγ subunits downstream of G protein–coupled receptor signaling and by PI(3,4,5)P 3 downstream of receptor tyrosine kinases. The PTEN:P-Rex2 complex is a commonly mutated signaling node in metastatic cancer. Assembly of the PTEN:P-Rex2 complex inhibits the activity of both proteins, and its dysregulation can drive PI3K-AKT signaling and cellular proliferation. Here, using cross-linking mass spectrometry and functional studies, we gained mechanistic insights into PTEN:P-Rex2 complex assembly and coinhibition. We found that PTEN was anchored to P-Rex2 by interactions between the PDZ-interacting motif in the PTEN C-terminal tail and the second PDZ domain of P-Rex2. This interaction bridged PTEN across the P-Rex2 surface, preventing PI(3,4,5)P 3 hydrolysis. Conversely, PTEN both allosterically promoted an autoinhibited conformation of P-Rex2 and blocked its binding to Gβγ. In addition, we observed that the PTEN-deactivating mutations and P-Rex2 truncations combined to drive Rac1 activation to a greater extent than did either single variant alone. These insights enabled us to propose a class of gain-of-function, cancer-associated mutations within the PTEN:P-Rex2 interface that uncouple PTEN from the inhibition of Rac1 signaling.

D’Andrea, Laura↗

NASA NTRS1973

Lunar atmospheric composition results from Apollo 17

The Apollo 17 mass spectrometer has confirmed the existence of helium, neon, argon, and possibly molecular hydrogen in the lunar atmosphere. Helium and neon concentrations are in agreement with model predictions based on the solar wind as a source and their being noncondensable gases. Ar-40 and Ar-36 both exhibit a predawn enhancement which indicates that they are condensable gases on the nightside and are re-released into the atmosphere at the sunrise terminator. Hydrogen probably exists in the lunar atmosphere in the molecular rather than atomic state, having been released from the surface in the molecular form. Total nighttime gas concentration of known species in the lunar atmosphere is 200,000 molecules/cu cm.

Hoffmann, J. H.↗

NASA NTRS1984

Surface acoustic admittance and absorption of highly porous, layered, fibrous materials

Some acoustic properties of Kevlar-29 - a fine fibered, layered material is investigated. Kevlar is characterized by very high strength, uniform filaments arranged in a parallel batt where most filaments are random in the x-y plane but ordered as planes in the z direction. For experimental purposes, volume porosity, static flow resistance and mean filament diameter are used to identify the material. To determine the acoustic surface admittance of Kevlar, batts of the material are cut into small pads and placed into a standing wave tube terminated by a rigid brass plug. The attenuation and relative phase shift are recorded at each frequency in the range of 50 to 6000 Hz. Normalized conductance and susceptance are combined to form the acoustic absorption coefficient. The data are compared with theory by plotting the normalized admittance and normal incident absorption coefficient versus cyclic frequency.

Tesar, J. S.↗

NASA NTRS1988

Fast O(sup +) ion flow observed around Venus at low altitudes

The Pioneer Venus Orbiter Neutral Mass Spectrometer (ONMS) has observed fast O(+) ions with an energy exceeding 40 eV in the spacecraft reference frame. The orbit of the spacecraft is nearly polar with periapsis near the equator. The ONMS is mounted at an angle to the spin axis which, in turn, is perpendicular to the ecliptic plane. From the spin modulated data the direction of the ion flow in that plane can be determined. Data from the first 11 diurnal cycles (orbits 1 to 2475) are vector averaged in order to display the general flow pattern. Plots of the averaged data are presented. On the dayside and near the terminators, where fast O(+) is observed near the ionopause, the directions are more or less parallel to the planet's surface with evidence of an asymmetry about the Sun-Venus line. On the nightside below 2000 km and near the equator there is a preferred dawn to dusk direction while at higher altitudes (lower solar zenith angles and higher latitudes) the flow direction is more antisunward. The averaged flux for this time period is 8x10 to the 5th/sq cm/s with a maximum of 5x10 to the 8th.

Kasprzak, W. T.↗

NASA NTRS2003

Attachment of Single-wall Carbon Nanotubes (SWNTs) on Platinum Surfaces by Self-Assembling Techniques

Single-wall carbon nanotubes (SWNTs) are very interesting materials because of their morphology, electronic and mechanical properties. Its morphology (high length-to-diameter ratio) and electronic properties suggest potential application of SWNTs as anode material for lithium ion secondary batteries. The introduction of SWNTs on these types of sources systems will improve their performance, efficiency, and capacity to store energy. A purification method has been applied for the removal of iron and amorphous carbon from the nanotubes. Unpurified and purified SWNTs were characterized by transmission electron microscopy (TEM), and thermogravimetric analysis (TGA). In order to attach carbon nanotubes on platinum electrode surfaces, a self-assembled monolayer (SAM) of 4-aminothiophenol (4-ATP) was deposited over the electrodes. The amino-terminated SAM obtained was characterized by cyclic voltammetry, X-ray photoelectron spectroscopy (XPS), and Fourier-transforms infrared (FTIR) spectroscopy. Carbon nanotubes were deposited over the amino-terminated SAM by an amide bond formed between SAM amino groups and carboxylic acid groups at the open ends of the carbon nanotubes.This deposition was characterized using Raman spectroscopy and Scanning Electron microscopy (SEM).

Rosario-Castro, Belinda I.↗

NASA NTRS1991

Molecular dynamics and quasidynamics simulations of the annealing of bulk and near-surface interstitials formed in molecular-beam epitaxial Si due to low-energy particle bombardment during deposition

The relaxation, diffusion, and annihilation of split and hexagonal interstitials resulting from 10 eV Si irradiation of (2x1)-terminated Si(100) are investigated. Molecular dynamics and quasidynamics simulations, utilizing the Tersoff many-body potential are used in the investigation. The interstitials are created in layers two through six, and stable atomic configurations and total potential energies are derived as a function of site symmetry and layer depth. The interstitial Si atoms are allowed to diffuse, and the total potential energy changes are calculated. Lattice configurations along each path, as well as the starting configurations, are relaxed, and minimum energy diffusion paths are derived. The results show that the minimum energy paths are toward the surface and generally involved tetrahedral sites. The calculated interstitial migration activation energies are always less than 1.4 eV and are much lower in the near-surface region than in the bulk.

Kitabatake, M.↗

DOE OSTI2021

Mechanistic Study of the Li–Air Battery with a Co 3 O 4 Cathode and Dimethyl Sulfoxide Electrolyte

The lithium–air battery, a powerful competitor to replace the traditional lithium-ion battery, has attracted increasing attention due to its extremely high theoretical energy density. However, its development is limited by the cathode and electrolyte properties, which should include high stability, conductivity, and electrocatalytic properties in oxygen-rich environments. Here, we employ a systematic first-principles study of Li–O 2 discharge and charge reactions on the Co 3 O 4 -based cathode with the assistance of dimethyl sulfoxide (DMSO) electrolyte. The structure, stability, and electronic properties of different surface reconstructions of the Co 3 O 4 (100) facet are investigated. In addition, the mechanisms and thermodynamic overpotentials of multi-step reactions between Li + /e – and O 2 are provided, where lithium suboxide products (Li 2 O 2 or Li 3 O 2 ) are formed on the different Co 3 O 4 (100) terminations. The solvation shell of Li + components in explicit DMSO solvent is investigated through ab initio molecular dynamics simulations. In general, we find that the Co 3 O 4 (100)-O (oxidized) surface is the most stable one under standard conditions, and the stable Li + solvation structure is found in a tetrahedral Li(DMSO) 4 + shell in the DMSO-based electrolyte. Moreover, in the system of the Co 3 O 4 (100)-O cathode and DMSO electrolyte, the solution model pathway is energetically favorable for the Li–O 2 discharge reaction. It provides a low constant overpotential of 0.17 V during a long-term discharging process, thus causing the final toroid Li 2 O 2 formation on the cathode. During the charging process, an overpotential of 0.36 V is required to rapidly decompose Li 2 O 2 .

25 ENERGY STORAGE↗

DOE OSTI2024

Intercalative Redox Tuning for Cu/Li x Mn 2 O 4 -Catalyzed Oxidative Alkyne Coupling

Modulation of heterogeneous catalyst structure is ubiquitous within efforts to improve catalytic activity and selectivity at the molecular level. Herein, manganese oxide (MnO 2 ) is employed as a continuously tunable catalyst support through increasing extent of lithium intercalation and reduced surface potential. Oxidative grafting of an organocopper complex onto various lithium manganese oxides (Li x Mn 2 O 4 , x = 0-2.1) produced divalent and monovalent copper species on the partially reduced (0 ≤ x ≤ 1.2) and fully reduced (x = 2.1) surfaces, respectively, as determined by X-ray absorption fine structure (XAFS) analysis. In this study, the resultant materials are catalytically active for the oxidative coupling of terminal alkynes, with steady-state reaction rate data of oxidative propyne dimerization (200 °C, 0.6-2.4 kPa propyne, 2.4-9.9 kPa O 2 ) indicating that complete support lithiation (Li 2.1 Mn 2 O 4 ) provides increased catalytic performance and renders reoxidation steps less kinetically demanding compared to the unreduced parent material. Enacting a dual site (Cu and MnO x ) kinetic model can account for dimerization rates measured over Cu/Li 2.1 Mn 2 O 4 under various reactant concentrations, copper loadings, and surface coverages, providing supporting evidence for the synergistic role of the metal and support in facilitating the coupling reaction. Overall, results presented here provide an extension for general strategies of systematically controlling catalytic structure and function through lithium reduction of bulk oxides and subsequent electronic modulation of the metals supported thereon.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

NASA NTRS1997

Surface Movement Incidents Reported to the NASA Aviation Safety Reporting System

Increasing numbers of aircraft are operating on the surface of airports throughout the world. Airport operations are forecast to grow by more that 50%, by the year 2005. Airport surface movement traffic would therefore be expected to become increasingly congested. Safety of these surface operations will become a focus as airport capacity planning efforts proceed toward the future. Several past events highlight the prevailing risks experienced while moving aircraft during ground operations on runways, taxiways, and other areas at terminal, gates, and ramps. The 1994 St. Louis accident between a taxiing Cessna crossing an active runway and colliding with a landing MD-80 emphasizes the importance of a fail-safe system for airport operations. The following study explores reports of incidents occurring on an airport surface that did not escalate to an accident event. The Aviation Safety Reporting System has collected data on surface movement incidents since 1976. This study sampled the reporting data from June, 1993 through June, 1994. The coding of the data was accomplished in several categories. The categories include location of airport, phase of ground operation, weather /lighting conditions, ground conflicts, flight crew characteristics, human factor considerations, and airport environment. These comparisons and distributions of variables contributing to surface movement incidents can be invaluable to future airport planning, accident prevention efforts, and system-wide improvements.

Connell, Linda J.↗

DOE OSTI2019

Measuring Local Electric Fields and Local Charge Densities at Electrode Surfaces Using Graphene-Enhanced Raman Spectroscopy (GERS)-Based Stark-Shifts

Here, we report spectroscopic measurements of the local electric fields and local charge densities at electrode surfaces using graphene-enhanced Raman spectroscopy (GERS) based on the Stark-shifts of surface-bound molecules and the G band frequency shift in graphene. Here, monolayer graphene is used as the working electrode in a three-terminal potentiostat while Raman spectra are collected in situ under applied electrochemical potentials using a water immersion lens. First, a thin layer (1 Å) of copper(II) phthalocyanine (CuPc) molecules are deposited on monolayer graphene by thermal evaporation. GERS spectra are then taken in an aqueous solution as a function of the applied electrochemical potential. The shifts in vibrational frequencies of the graphene G band and CuPc are obtained simultaneously and correlated. The upshifts in the G band Raman mode are used to determine the free carrier density in the graphene sheet under these applied potentials. Of the three dominant peaks in the Raman spectra of CuPc (i.e., 1531, 1450, and 1340 cm –1 ), only the 1531 cm –1 peak exhibits Stark-shifts and can, thus, be used to report the local electric field strength at the electrode surface under electrochemical working conditions. Between applied electrochemical potentials from -0.8 V to 0.8 V vs NHE, the free carrier density in the graphene electrode spans a range from -4 × 10 12 cm –2 to 2 × 10 12 cm –2 . Corresponding Stark-shifts in the CuPc peak around 1531 cm –1 are observed up to 1.0 cm –1 over a range of electric field strengths between -3.78 × 10 6 and 1.85 × 10 6 V/cm. Slightly larger Stark-shifts are observed in a 1 M KCl solution, compared to those observed in DI water, as expected based on the higher ion concentration of the electrolyte. Based on our data, we determine the Stark shift tuning rate to be 0.178 cm –1 / (10 6 V/cm), which is relatively small due to the planar nature of the CuPc molecule, which largely lies perpendicular to the electric field at this electrode surface. Computational simulations using density functional theory (DFT) predict similar Stark shifts and provide a detailed atomistic picture of the electric field-induced perturbations to the surface-bound CuPc molecules.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2022

Y(III) Sorption at the Orthoclase (001) Surface Measured by X-ray Reflectivity

Interactions of heavy metals with charged mineral surfaces control their mobility in the environment. Here, we investigate the adsorption of Y(III) onto the orthoclase (001) basal plane, the former as a representative of rare earth elements and an analogue of trivalent actinides and the latter as a representative of naturally abundant K-feldspar minerals. In this study, we apply in situ high-resolution X-ray reflectivity to determine the sorption capacity and molecular distribution of adsorbed Y species as a function of the Y 3+ concentration, [Y 3+ ], at pH 7 and 5. With [Y 3+ ] ≥ 1 mM at pH 7, we observe an inner-sphere (IS) sorption complex at a distance of ~1.5 Å from the surface and an outer-sphere (OS) complex at 3–4 Å. Based on the adsorption height of the IS complex, a bidentate, binuclear binding mode, in which Y 3+ binds to two terminal oxygens, is proposed. In contrast, mostly OS sorption is observed at pH 5. The observed maximum Y coverage is ~1.3 Y 3+ /A UC (A UC : area of the unit cell = 111.4 Å 2 ) for all the investigated pH values and Y concentrations, which is in the expected range based on the estimated surface charge of orthoclase (001).

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

NASA NTRS2010

Boundary Layer Measurements in a Supersonic Wind Tunnel Using Doppler Global Velocimetry

A modified Doppler Global Velocimeter (DGV) was developed to measure the velocity within the boundary layer above a flat plate in a supersonic flow. Classic laser velocimetry (LV) approaches could not be used since the model surface was composed of a glass-ceramic insulator in support of heat-transfer measurements. Since surface flare limited the use of external LV techniques and windows placed in the model would change the heat transfer characteristics of the flat plate, a novel approach was developed. The input laser beam was divided into nine equal power beams and each transmitted through optical fibers to a small cavity within the model. The beams were then directed through 1.6-mm diameter orifices to form a series of orthogonal beams emitted from the model and aligned with the tunnel centerline to approximate a laser light sheet. Scattered light from 0.1-micron diameter water condensation ice crystals was collected by four 5-mm diameter lenses and transmitted by their respective optical fiber bundles to terminate at the image plane of a standard two-camera DGV receiver. Flow measurements were made over a range from 0.5-mm above the surface to the freestream at Mach 3.51 in steady state and heat pulse injected flows. This technique provides a unique option for measuring boundary layers in supersonic flows where seeding the flow is problematic or where the experimental apparatus does not provide the optical access required by other techniques.

Meyers, James F.↗

NASA NTRSDate not supplied

Impact of ATD-2 Tools on Human Factors Metrics at Charlotte Douglas International Airport

New decision support tools were introduced at Charlotte Douglas International Airport (CLT) as part of NASA’s Air Traffic Demonstration 2 (ATD-2) project. ATD-2 is based on concepts which enable integrated arrival, departures, and surface (IADS) operations in a metroplex environment. Metrics on environmental benefits from ATD-2’s surface metering at CLT have shown impressive reductions in fuel consumption and CO2 emissions. Questions have remained on 1) the human factors impact of these new ATD-2 tools and surface metering and 2) the users’ perceptions of how these tools affect operations. To address these questions, post-bank surveys were designed for the four types of users of the new tools at CLT: Ramp Controllers, Ramp Managers, Tower Traffic Management Coordinators (TMCs) and Terminal Radar Approach Control (TRACON) TMCs. These surveys were administered during five-day blocks at three different times. Three types of banks were compared: No ATD-2 tool use, ATD-2 tool use, and ATD-2 use plus surface metering. Results indicate that higher workload or decreased situation awareness was not significantly associated with ATD-2 tool use more than no ATD-2 tool use--in fact for many users the opposite was true. Also, acceptability and operational efficiency measures indicate that the users did not perceive that banks with ATD-2 tools were significantly less acceptable or less efficient than banks without ATD-2 tools.

Airspace Technology Demonstration 2↗

NASA NTRS2020

Impact of ATD-2 Tools on Human Factor Metrics at Charlotte Douglas International Airport

Bonny K Parke↗

DOE OSTI2019

Revisiting the Polyol Synthesis of Silver Nanostructures: Role of Chloride in Nanocube Formation

Chloride (Cl – ) is normally used together with polyvinylpyrrolidone (PVP) in the polyol synthesis of Ag nanocubes. In the literature, shape control is attributed predominantly to the preferential binding of PVP to Ag(100) facets compared to Ag(111) facets, whereas the role of Cl – has not been well studied. Several hypotheses have been proposed regarding the role of Cl – ; however, there is still no consensus regarding the exact influence of Cl – in the shape-controlled synthesis of Ag nanocubes. To examine the influence of Cl – , we undertook a joint theoretical–experimental study. Experimentally, we examined the influence of Cl – concentration on the shape of Ag nanoparticles (NPs) at constant H + concentration. In the presence of H + , in situ formed HNO3 etches the initially formed Ag seeds and slows down the overall reduction of Ag + , which promotes the formation of monodisperse Ag NPs. Ex situ experiments probed the evolution of Cl – during the growth of Ag nanocubes, which involves the initial formation of AgCl nanocubes, and their subsequent dissolution to release Cl – , which adsorbs onto the surfaces of single crystal seeds to impact shape evolution through apparent thermodynamic control. The formation of cubes is independent of the source of AgCl, indicating temporal control of the Cl – chemical potential in solution leads to high-yield synthesis of Ag nanocubes. Increasing the concentration of Cl – alone leads to a progression in shape from truncated octahedra, to cuboctahedra, truncated cubes, and ultimately cubes, directly demonstrating the importance of Cl – in Ag NP shape control. Here, we used ab initio thermodynamics calculations based on density functional theory to probe the role of Cl – in directing shape control. With increasing Cl chemical potential (surface coverage), calculated surface energies γ of Ag facets transition from γ 111 < γ 100 to γ 100 < γ 111 and predict Wulff shapes terminated with an increasing (100) contribution, consistent with experimental observations. The combination of theory and experiment is beneficial for advancing the understanding of nanocrystal formation.

77 NANOSCIENCE AND NANOTECHNOLOGY↗