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At least 109 records · Page 6

Book Review: What Makes a Good Experiment? Reasons and Roles in Science

Classification is an arduous and sometimes controversial undertaking because of its inherent cultural particularity. One famous literary example is the fictitious nomenclature of animals found in Jorge Luis Borges’s ‘The Analytical Language of John Wilkins’. According to Borges, that taxonomy was discovered by a translator, F. Kuhn, in a Chinese source and divides all animals into fourteen categories, starting with ‘those that belong to the Emperor’ and ending with ‘those that from a long way off look like flies’. Physics of the twentieth century is a ramified full-fledged technical culture, and it should surprise no one that physics experiments can be classified in different ways, allowing certain experiments to belong to more than one category. Allan Franklin’s analysis of experiments is based on his classification, which substantially grasps the essence of the experimental enterprise. Although Franklin does not offer an explicit answer to the question posed in the title, he does include a detailed examination of several important physics and biology experiments in history

Pronskikh, Vitaly↗

Markers and Beyond: Categorizing Human Intrusion Situations to be Addressed in Sub-surface Marking Concepts - 16378

Concepts for the use of markers in the post-closure phase of deep geological repositories (DGRs), are often designed to prevent 'inadvertent' human intrusion (HI), while it is common practice not to protect against deliberate intrusion (i.e. 'advertent' HI). In the literature, inadvertent HI prevention studies usually combine future human activity scenarios with the assumption that all memory of the DGR has been lost, and analyze what can be done now to make the possible future intruder 'aware' of the associated risks. In this paper, we show that the classical 'advertent'/'inadvertent' duality classification of HI, as used in the performance assessment context, is not ideal to characterize potential HI situations in the RK and M preservation context. We suggest that the relevant HI categories are expanded and refined to 'un/necessary HI', 'un/intentional HI' and 'un/friendly HI'. Along with refining the taxonomy of HI that way, we refine the assumption relating to the loss of memory of the DGR. Different HI situations are likely to arise in different 'loss-of-memory situations'. We analyze the resulting 5 classes of the proposed HI classification and find that 2 hold the classic 'advertent' and 'inadvertent' HI scenarios while 3 are 'new'. We apply the proposed categories to sub-surface marking concepts from the literature and suggest that, in particular, sub-surface marking concepts would benefit from this new approach to HI and loss-of-memory categorization. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

High-Resolution Infrared Spectroscopic Measurements of Comet 2PlEncke: Unusual Organic Composition and Low Rotational Temperatures

We present high-resolution infrared spectroscopic measurements of the ecliptic comet 2P/Encke, observed on 4-6 Nov. 2003 during its close approach to the Earth, using the Near Infrared Echelle Spectrograph on the Keck II telescope. We present flux-calibrated spectra, production rates, and mixing ratios for H2O, CH3OH, HCN, H2CO, C2H2, C2H6, CH4 and CO. Comet 2P/Encke is a dynamical end-member among comets because of its short period of 3.3 years. Relative to "organics-normal" comets, we determined that 2PlEncke is depleted in HCN, H2CO, C2H2, C2H6, CH4 and CO, but it is enriched in CH3OH. We compared mixing ratios of these organic species measured on separate dates, and we see no evidence of macroscopic chemical heterogeneity in the nucleus of 2P/Encke, however, this conclusion is limited by sparse temporal sampling. The depleted abundances of most measured species suggest that 2P/Encke may have formed closer to the young Sun, before its insertion to the Kuiper belt, compared with "organics-normal" comets - as was previously suggested for other depleted comets (e.g. C/1999 S4 (LINEAR)). We measured very low rotational temperatures of 20 - 30 K for H2O, CH3OH and HCN in the near nucleus region of 2P/Encke, which correlate with one of the lowest cometary gas production rates (approx. 2.6 x 10(exp 27) molecules/s) measured thus far in the infrared. This suggests that we are seeing the effects of more efficient radiative cooling, insufficient collisional excitation, and/or inefficient heating by fast H-atoms (and icy grains) in the observed region of the coma. Its extremely short orbital period, very low gas production rate, and classification as an ecliptic comet, make 2PlEncke an important addition to our growing database, and contribute significantly to the establishment of a chemical taxonomy of comets.

Radeva, Yana L.↗

Taxonomy for Evaluation of Distributed Control Strategies for Distributed Energy Resources

Distributed control strategies applied to power distribution control problems are meant to offer robust and scalable integration of distributed energy resources (DERs). However, the term 'distributed control' is often loosely applied to a variety of very different control strategies. In particular there is a lack of discrimination between aspects related to communication topology, physical distribution of components, and associated control objectives. This has lead to a lack of objective criteria for performance comparison and general quality assessment of state of the art distributed control solutions. For such comparison, a classification is required that is consistent across the different aspects mentioned above. This paper develops systematic categories of control strategies that accounts for communication, control and physical distribution aspects of the problem, and provides a set of criteria that can be assessed for these categories. The proposed taxonomy is applied to the state of the art as part of a review of existing work on distributed control of DER. Finally, we demonstrate the applicability and usefulness of the proposed classification to researchers and system designers.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Discovering the Role of Grain Boundary Complexions in Materials

Grain boundaries are inherently an area of disorder in polycrystalline materials which define the transport and various other material properties. The relationship between the interfacial chemistry, structure and the material properties is not well understood. Among the various taxonomies for grain boundaries, Grain Boundary Complexion is a relatively new conceptual scheme that relates the structure and kinetic properties of grain boundaries. In this classification scheme, grain boundaries are considered to be distinct three dimensional (the thickness being considerably smaller as compared to the other two dimensions but nonetheless discernible) equilibrium thermodynamic phases abutted between two crystalline phases. The stability and structure of these interfacial phases are dictated by various thermodynamic variables such as temperature, stress (pressure), interfacial chemistry (chemical potential) and most importantly by the energies of the adjoining crystal surfaces. These phases are only stable within the constraint of the adjoining grains. Although these interfacial phases are not stable in bulk form, they can transform from one complexion to another as a function of various thermodynamic variables analogous to the behavior of bulk phases. Examples of different complexions have been reported in various publications. However, a systematic investigation exploring the existence of grain boundary complexions in material systems other than alumina remains to be done. Although the role of interfacial chemistry on grain boundary complexions in alumina has been addressed, a clear understanding of the underlying thermodynamics governing complexion formation is lacking. Finally, the effects of grain boundary complexions in bulk material properties are widely unknown. Factors above urge a thorough exploration of grain boundary complexions in a range of different materials systems The purpose of the current program is to verify the existence of grain boundary complexion in a range of materials systems, and to characterize their structures, range of stability and selected physical properties. First, an Au-based bilayer interfacial phase was discovered at a bicrystal boundary in the Si-Au system. This bilayer transitioned abruptly to an intrinsic (“clean”) grain boundary phase, suggesting first-order phase behavior. This study represents the discovery of grain boundary complexions in a completely new system, i.e., a semiconductor-metal system, giving further support to the expectation that grain boundary complexions are a general phenomenon not limited to any particular class of materials. The TiO 2 -CuO system exhibited four grain boundary interfacial phases: a monolayer, disordered bilayer, disordered trilayer, and non-wetting nanoscale amorphous drop (which likely resulted from dewetting of a nanoscale IGF). SiO 2 contamination was discovered in the TiO 2 -CuO samples, and we hypothesize that this impurity may have caused an “order-disorder” transition to occur. In other words, we expect that pure TiO 2 -CuO may have a higher tendency to exhibit ordered bilayer and trilayer complexions, which may also exhibit a well-defined order-disorder transition temperature. In this effort we have also identified unique complexion transitions in yttria and strontium titanate.

36 MATERIALS SCIENCE↗

Monitoring Matang's Mangroves in Peninsular Malaysia through Earth observations: A globally relevant approach

Expansion of rotational timber harvesting of mangroves is set to increase, particularly given greater recognition of the economic, societal and environmental benefits. Generic and standardized procedures for monitoring mangroves are, therefore, needed to ensure their long-term sustainable utilisation. Focusing on the Matang Mangrove Forest Reserve (MMFR), Perak State, Peninsular Malaysia, thematic and continuous environmental descriptors with defined codes or units, including life form, forest age (years), canopy cover (%), above-ground biomass (Mg/ha) and relative amounts of woody debris (%), were retrieved from time-series data from spaceborne optical and single/dual polarimetric and interferometric RADAR. These were then combined for multiple points in time to generate land cover and evidence-based change maps according to the Food and Agriculture Organisation (FAO) Land Cover Classification System (LCCS) and using the framework of the Earth Observation Data for Ecosystem Monitoring (EODESM). Change maps were based on a pre-defined taxonomy, with focus on clear cutting and regrowth. Uncertainties surrounding the land cover and change maps were based on those determined for the environmental descriptors used for their generation and through comparison with independent retrieval from other EO data sources. For the MMFR and also for other mangroves worldwide where harvesting is occurring or being considered, a new approach and opportunity for supporting management of mangroves is presented, which has application for future planning of mangrove resources.

Richard Lucas↗

Meta2DB: Curated Shotgun Metagenomic Feature Sets and Metadata for Health State Prediction

Meta2DB is a curated metagenomic and metadata database that provides structurally consistent microbiome taxonomy feature count tables for 13 897 samples across 84 studies, 23 disease states, and 34 geographical locations. All samples were uniformly processed using a streamlined metagenomic classification pipeline that employs a unique and comprehensive reference database indexed to contain all sequences across all kingdoms of life that were present in the NCBI Nucleotide (nt) database retrieved on 4 January 2023. This pipeline leverages high-performance computing (HPC) resources at Lawrence Livermore National Laboratory and was used to process 50TB of publicly available raw metagenomic sequence data. Extensive metadata curation was carried out through a combination of manual curation and automated parsing, producing a consistent inter-study metadata table specifically structured to facilitate training of ML models for prediction of human health.

Kok, C [Lawrence Livermore National Laboratory (LL↗

Cognitive representations of flight-deck information attributes

A large number of aviation issues are generically being called fligh-deck information management issues, underscoring the need for an organization or classification structure. One objective of this study was to empirically determine how pilots organize flight-deck information attributes and -- based upon that data -- develop a useful taxonomy (in terms of better understanding the problems and directing solutions) for classifying flight-deck information management issues. This study also empirically determined how pilots model the importance of flight-deck information attributes for managing information. The results of this analysis suggest areas in which flight-deck researchers and designers may wish to consider focusing their efforts.

Ricks, Wendell R.↗

Expanded Classification of Hepatitis C Virus Into 7 Genotypes and 67 Subtypes: Updated Criteria and Genotype Assignment Web Resource

The 2005 consensus proposal for the classification of hepatitis C virus (HCV) presented an agreed and uniform nomenclature for HCV variants and the criteria for their assignment into genotypes and subtypes. Since its publication, the available dataset of HCV sequences has vastly expanded through advancement in nucleotide sequencing technologies and an increasing focus on the role of HCV genetic variation in disease and treatment outcomes. The current study represents a major update to the previous consensus HCV classification, incorporating additional sequence information derived from over 1,300 (near-)complete genome sequences of HCV available on public databases in May 2013. Analysis resolved several nomenclature conflicts between genotype designations and using consensus criteria created a classification of HCV into seven confirmed genotypes and 67 subtypes. There are 21 additional complete coding region sequences of unassigned subtype. The study additionally describes the development of a Web resource hosted by the International Committee for Taxonomy of Viruses (ICTV) that maintains and regularly updates tables of reference isolates, accession numbers, and annotated alignments (http://talk.ictvonline.org/links/hcv/hcv-classification.htm). The Flaviviridae Study Group urges those who need to check or propose new genotypes or subtypes of HCV to contact the Study Group in advance of publication to avoid nomenclature conflicts appearing in the literature. While the criteria for assigning genotypes and subtypes remain unchanged from previous consensus proposals, changes are proposed in the assignment of provisional subtypes, subtype numbering beyond “w,” and the nomenclature of intergenotypic recombinant. Conclusion: This study represents an important reference point for the consensus classification of HCV variants that will be of value to researchers working in clinical and basic science fields.

59 BASIC BIOLOGICAL SCIENCES↗

Rapid determination of soil classes in soil profiles using vis–NIR spectroscopy and multiple objectives mixed support vector classification

Summary Visible‐near infrared (vis–NIR) spectroscopy can reveal various soil properties and facilitate soil classification. However, few studies have attempted to classify vertical soil profiles that contain several genetic horizons. Here, we propose the ‘multiple objectives mixed support vector classification’ (MOM–SVC) method to classify soil profiles. A total of 130 soil profiles were collected from genetic horizons in Zhejiang Province, China. After laboratory analysis, soil profiles were classified according to the Chinese Soil Taxonomy system. Vis–NIR spectra were recorded from each genetic horizon of each soil profile and were then pre‐processed. We performed the MOM–SVC method as follows: (i) created a support vector machine (SVM) model (one‐versus‐one approach) using spectral data from all soil horizons in calibration profiles, (ii) applied the SVM model on each horizon of the profile to be predicted, (iii) extracted ‘votes’ from each horizon and mixed (or summarized) them into the votes of each profile to be predicted and (iv) classified each profile by the majority‐voting method. We also investigated whether the additional input of auxiliary soil information (e.g. moist soil colour, soil organic matter and soil texture), which could be measured easily or be well predicted by vis–NIR spectroscopy, could improve the accuracy of soil classification when combined with it. Independent validation results showed that the MOM–SVC method performed better at the soil order level than at the suborder level. Adding auxiliary soil information to the classification model improved the overall accuracy of classification at the soil order level. The proposed MOM–SVC method provides a fast objective diagnostic of soil classes for use in soil surveys and can help to update soil databases when a more objective soil classification system is developed. Highlights The MOM–SVC method can be used to classify soil profiles objectively with a variety of soil horizons. Stratified random sampling was used to quantify prediction uncertainty in classification MOM–SVC can predict soil orders with greater accuracy than suborders. Adding auxiliary soil information into the classification model improved prediction accuracy.

Chen, S.↗

Default taxonomy: Ernst Mayr's view of the microbial world

This perspective is a response to a taxonomic proposal by E. Mayr ["Two empires or three?" (1998) Proc. Natl. Acad. Sci. USA 95, 9720-9723]. Mayr has suggested that the now accepted classification of life into three primary domains, Archaea, Bacteria, and Eucarya-originally proposed by myself and others--be abandoned in favor of the earlier Prokaryote-Eukaryote classification. Although the matter appears a taxonomic quibble, it is not that simple. At issue here are differing views as to the nature of biological classification, which are underlain by differing views as to what biology is and will be--matters of concern to all biologists.

Non-NASA Center↗

State of the Art in Time‐Dependent Flow Topology: Interpreting Physical Meaningfulness Through Mathematical Properties

Abstract We present a state‐of‐the‐art report on time‐dependent flow topology. We survey representative papers in visualization and provide a taxonomy of existing approaches that generalize flow topology from time‐independent to time‐dependent settings. The approaches are classified based upon four categories: tracking of steady topology, reference frame adaption, pathline classification or clustering, and generalization of critical points. Our unique contributions include introducing a set of desirable mathematical properties to interpret physical meaningfulness for time‐dependent flow visualization, inferring mathematical properties associated with selective research papers, and utilizing such properties for classification. The five most important properties identified in the existing literature include coincidence with the steady case, induction of a partition within the domain, Lagrangian invariance, objectivity, and Galilean invariance.

Bujack, Roxana↗

The Tropical Convective Spectrum: Archetypal Vertical Structures - Part 1

A taxonomy of tropical convective and stratiform vertical structures is constructed through cluster analysis of 3 yr of Tropical Rainfall Measuring Mission (TRMM) "warm-season" (surface temperature greater than 10 C) precipitation radar (PR) vertical profiles, their surface rainfall, and associated radar-based classifiers (convective/ stratiform and brightband existence). Twenty-five archetypal profile types are identified, including nine convective types, eight stratiform types, two mixed types, and six anvil/fragment types (nonprecipitating anvils and sheared deep convective profiles). These profile types are then hierarchically clustered into 10 similar families, which can be further combined, providing an objective and physical reduction of the highly multivariate PR data space that retains vertical structure information. The taxonomy allows for description of any storm or local convective spectrum by the profile types or families. The analysis provides a quasi-independent corroboration of the TRMM 2A23 convective/ stratiform classification. The global frequency of occurrence and contribution to rainfall for the profile types are presented, demonstrating primary rainfall contribution by midlevel glaciated convection (27%) and similar depth decaying/stratiform stages (28%-31%). Profiles of these types exhibit similar 37- and 85-GHz passive microwave brightness temperatures but differ greatly in their frequency of occurrence and mean rain rates, underscoring the importance to passive microwave rain retrieval of convective/stratiform discrimination by other means, such as polarization or texture techniques, or incorporation of lightning observations. Close correspondence is found between deep convective profile frequency and annualized lightning production, and pixel-level lightning occurrence likelihood directly tracks the estimated mean ice water path within profile types.

Precipitation radar↗

Image-based novel fault detection with deep learning classifiers using hierarchical labels

One important characteristic of modern fault classification systems is the ability to flag the system when faced with previously unseen fault types. This work considers the unknown fault detection capabilities of deep neural network-based fault classifiers. Specifically, we propose a methodology on how, when available, labels regarding the fault taxonomy can be used to increase unknown fault detection performance without sacrificing model performance. To achieve this, we propose to utilize soft label techniques to improve the state-of-the-art deep novel fault detection techniques during the training process and novel hierarchically consistent detection statistics for online novel fault detection. Lastly, we demonstrated increased detection performance on novel fault detection in inspection images from the hot steel rolling process, with results well replicated across multiple scenarios and baseline detection methods.

42 ENGINEERING↗

A Taxonomy and Feature set for Server-Side Identification of Proxies

Malicious actors frequently use proxies and VPNs to evade detection and hide their origin. Current challenges to information security include the use of residential proxies to blend in with normal traffic and Man-in-the-Middle phishing proxies that are used to compromise accounts protected with mult-factor authentication. We advance a taxonomy and feature set for the identification of proxied traffic based on the network layer where proxying occurs. We describe how these features apply to common proxy types and how to use these features in the classification of the proxied traffic. Collection of these additional features is feasible using existing network sensors and web servers, while only adding about 30% volume to commonly deployed network sensor logs.

97 MATHEMATICS AND COMPUTING↗

Grid Event Signature Library Analytics Report: Signature Matching Tool Development Efforts

This report describes the purpose and features of the Signature Matching Tool (SMT), employed in the Department of Energy (DOE) Grid Event Signature Library (GESL). The SMT supports a user of GESL to identify snippets of electric signatures, usually from sensor devices measuring electric characteristics such as phase voltages and currents, frequency, etc., suspected to represent certain events in the power grid but are not known to the user. The SMT uses a classification method to identify an event of the unknown signature, using the repository of known and labeled signatures in the GESL. The classifier applies a local binary classifier per node (LCN) approach to the unique event tag taxonomy used in the GESL, where training phases are separated based on the Primary labels in the taxonomy, sensor type, and voltage level. Results show that this method helps with computing time during training, in comparison to a flat, multinomial classifier, and produces acceptable average accuracy of 83% across all Primary labels. The report concludes with planned future work including integration to the web interface and API.

97 MATHEMATICS AND COMPUTING↗

TU-D-201-04: Veracity of Data Elements in Radiation Oncology Incident Learning Systems

Purpose: Incident learning systems encompass volumes, varieties, values, and velocities of underlying data elements consistent with the V’s of big data. Veracity, the 5th V however exists only if there is high inter-rater reliability (IRR) within the data elements. The purpose of this work was to assess IRR in the nationally deployed RO-ILS: Radiation Oncology-Incident Learning System (R) sponsored by the American Society for Radiation Oncology (ASTRO) and the American Association of Physicists in Medicine (AAPM). Methods: Ten incident reports covering a wide range of scenarios were created in standardized narrative and video formats and disseminated to 67 volunteers of multiple disciplines from 26 institutions along with two published narratives from the International Commission of Radiological Protection to assess IRR on a nationally representative level. The volunteers were instructed to independently enter the associated data elements in a test version of RO-ILS over a 3-week period. All responses were aggregated into a spreadsheet to assess IRR using free-marginal kappa metrics. Results: 48 volunteers from 21 institutions completed all reports in the study period. The average kappa score for all raters across all critical data elements was 0.659 [range 0.326–1.000]. Statistically significant differences (p <0.05) were noted between reporters of different disciplines and raters with varying levels of experience. Kappa scores were high for event classification (0.781) and contributory factors (0.777) and low for likelihood-of-harm (0.326). IRR was highest among AAPM-ASTRO members (0.672) and lowest among trainees (0.463). Conclusion: A moderate-to-substantial level of IRR in RO-ILS was noted in this study. Although the number of events reviewed in this study was small, opportunities for improving the taxonomy for the lower scoring data elements as well as specific educational targets for training were identified by assessing data veracity quantitatively. This is expected to improve the quality of the data garnered from RO-ILS.

60 APPLIED LIFE SCIENCES↗