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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 109 records · Page 6
All sourcesNASA NTRSDOE OSTI
DOE OSTI2025

RB-TnSeq elucidates dicarboxylic-acid-specific catabolism in β-proteobacteria for improved plastic monomer upcycling

Dicarboxylic acids are key components of many polymers and plastics, making them a target for both engineered microbial degradation and sustainable bioproduction. In this study, we generated a comprehensive data set of functional evidence for the genetic basis of dicarboxylic and fatty acid metabolism using randomly barcoded transposon sequencing (RB-TnSeq). We identified four β-proteobacteria that displayed robust growth with dicarboxylic acid sole carbon source and cultured their mutant libraries with dicarboxylic and fatty acids with carbon chain lengths from C3 to C12. The resulting fitness data suggested that dicarboxylic and fatty acid metabolisms are largely distinct, and different sets of β-oxidation genes are required for catabolizing dicarboxylic versus fatty acids of the same carbon chain lengths. In addition, we identified transcriptional regulators and transporters with strong fitness phenotypes related to dicarboxylic acid utilization. In Ralstonia sp. UNC404CL21Col (R. CL21), we deleted two transcriptional repressors to improve its utilization of short-chain dicarboxylic acids. We exploited the diacid-utilizing catabolism of R. CL21 to upcycle a mock mixture of the dicarboxylic acids produced when polyethylene is oxidized. After introducing a heterologous indigoidine production pathway, this engineered Ralstonia produced 0.56 ± 0.02 g/L indigoidine from a mixture of dicarboxylic acids as a carbon source, demonstrating the potential of R. CL21 to upcycle plastic wastes to products derived from tricarboxylic acid (TCA) cycle intermediates. IMPORTANCE: Upcycling the carbon in plastic wastes to value-added products is a promising approach to address the plastic waste and climate crises, and dicarboxylic acid metabolism is an important facet of several approaches. Improving our understanding of the genetic basis of this metabolism has the potential to uncover new enzymes and genetic parts for engineered pathways involving dicarboxylic acids. Our data set is the most comprehensive interrogation of dicarboxylic acid catabolism to date, and this work will be of utility to researchers interested in both plastics bioproduction and upcycling applications.

Pearson, Allison N↗
DOE OSTI2022

Filling gaps in bacterial catabolic pathways with computation and high-throughput genetics

To discover novel catabolic enzymes and transporters, we combined high-throughput genetic data from 29 bacteria with an automated tool to find gaps in their catabolic pathways. GapMind for carbon sources automatically annotates the uptake and catabolism of 62 compounds in bacterial and archaeal genomes. For the compounds that are utilized by the 29 bacteria, we systematically examined the gaps in GapMind’s predicted pathways, and we used the mutant fitness data to find additional genes that were involved in their utilization. We identified novel pathways or enzymes for the utilization of glucosamine, citrulline, myo-inositol, lactose, and phenylacetate, and we annotated 299 diverged enzymes and transporters. We also curated 125 proteins from published reports. For the 29 bacteria with genetic data, GapMind finds high-confidence paths for 85% of utilized carbon sources. In diverse bacteria and archaea, 38% of utilized carbon sources have high-confidence paths, which was improved from 27% by incorporating the fitness-based annotations and our curation. GapMind for carbon sources is available as a web server ( http://papers.genomics.lbl.gov/carbon ) and takes just 30 seconds for the typical genome.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

Information theory optimization of signals from small-angle scattering measurements

Small-angle X-ray scattering (SAXS) of particles in solution informs on the conformational states and assemblies of biological macromolecules (bioSAXS) outside of cryo- and solid-state conditions. In bioSAXS, the SAXS measurement under dilute conditions is resolution limited, and through an inverse Fourier transform, the measured SAXS intensities directly relate to the physical space occupied by the particles via the P (r)-distribution. Yet, this inverse transform of SAXS data has been historically cast as an ill-posed, ill-conditioned problem requiring an indirect approach. Here, we show that through the applications of matrix and information theories, the inverse transform of SAXS intensity data is a well-conditioned problem. The so-called ill-conditioning of the inverse problem is directly related to the Shannon number. By exploiting the oversampling enabled by modern detectors, a direct inverse Fourier transform of the SAXS data is possible, provided the recovered information does not exceed the Shannon number. The Shannon limit corresponds to the maximum number of significant singular values that can be recovered in a SAXS experiment, suggesting this relationship is a fundamental property of band-limited inverse integral transform problems. This correspondence reduces the complexity of the inverse problem to the Shannon limit and maximum dimension. We propose a hybrid scoring function using an information theory framework that assesses both the quality of the model-data fit as well as the quality of the recovered P (r)-distribution. The hybrid score utilizes the Akaike information criteria and Durbin-Watson statistic that considers parameter-model complexity, i.e., degrees of freedom, and the randomness of the model-data residuals. The described tests and findings extend the boundaries for bioSAXS by completing the information theory formalism initiated by Peter B. Moore to enable a quantitative measure of resolution in SAXS, robustly determine maximum dimension, and more precisely define the best parameter model appropriately representing the observed scattering data.

Rambo, Robert P. [Science and Technology Facilitie↗
DOE OSTI2025

Initial measurement of reactor antineutrino oscillation at SNO+

The SNO+ collaboration reports its first spectral analysis of long-baseline reactor antineutrino oscillation using 114 tonne-years of data. Fitting the neutrino oscillation probability to the observed energy spectrum yields constraints on the neutrino mass-squared difference Δ$m^2_{21}$. In the ranges allowed by previous measurements, the best-fit Δ$m^2_{21}$ is ($8.85^{+1.10}_{-1.33}$) × 10 -5 eV 2 . This measurement is continuing in the next phases of SNO+ and is expected to surpass the present global precision on Δ$m^2_{21}$ with about three years of data. In the following, we first describe the configuration of the SNO+ detector when it was partially filled with scintillator, and a characterization of the detector response using intrinsic radioactivity. Next, we detail the event selection and expectations for reactor IBDs and (α, n) reactions. Then, we present the results of an energy spectrum analysis using 114 tonne-years of data. We conclude with prospects of future results from the SNO+ detector, which has been operating fully-filled with 780 tonnes of scintillator

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2018

Mutant phenotypes for thousands of bacterial genes of unknown function

One-third of all protein-coding genes from bacterial genomes cannot be annotated with a function. Here, to investigate the functions of these genes, we present genome-wide mutant fitness data from 32 diverse bacteria across dozens of growth conditions. We identified mutant phenotypes for 11,779 protein-coding genes that had not been annotated with a specific function. Many genes could be associated with a specific condition because the gene affected fitness only in that condition, or with another gene in the same bacterium because they had similar mutant phenotypes. Of the poorly annotated genes, 2,316 had associations that have high confidence because they are conserved in other bacteria. By combining these conserved associations with comparative genomics, we identified putative DNA repair proteins; in addition, we propose specific functions for poorly annotated enzymes and transporters and for uncharacterized protein families. Lastly, our study demonstrates the scalability of microbial genetics and its utility for improving gene annotations.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2019

WISE-CASING: Containment and Monitoring Institute (CaMI), Calgary, Canada FEM-DC Model

For the model calculation we applied EM3D using completion diagram of CaMI site and a background resistivity consistent with the borehole logs. It was also important to use the accurate position of the return electrode. We note that for the data fit the code also incorporated well casings for well INJ and the other observation well, either OB1 or OB2, in the calculation. In summary, we demonstrate here, for this particular case, that the DC results may be a reasonable approximation to the low frequency EM data collected at CaMI. If this approximation continues to hold, then the extreme computational efficiency offered by the hierarchical modeling used in the DC simulations will permit us to explore far more model complexity, especially the pervasive and troublesome data artifacts that arise when doing EM surveys in mature, culturally developed sites. In Brief, both the low frequency and DC simulation codes provided very consistent results that match the field data really well, indicating their capability to help monitoring borehole integrity with the low frequency EM method.

15 GEOTHERMAL ENERGY↗
DOE OSTI2019

The spatial allocation of population: a review of large-scale gridded population data products and their fitness for use

Population data represent an essential component in studies focusing on human–nature interrelationships, disaster risk assessment and environmental health. Several recent efforts have produced global- and continental-extent gridded population data which are becoming increasingly popular among various research communities. However, these data products, which are of very different characteristics and based on different modeling assumptions, have never been systematically reviewed and compared, which may impede their appropriate use. This article fills this gap and presents, compares and discusses a set of large-scale (global and continental) gridded datasets representing population counts or densities. It focuses on data properties, methodological approaches and relative quality aspects that are important to fully understand the characteristics of the data with regard to the intended uses. Written by the data producers and members of the user community, through the lens of the “fitness for use” concept, the aim of this paper is to provide potential data users with the knowledge base needed to make informed decisions about the appropriateness of the data products available in relation to the target application and for critical analysis.

58 GEOSCIENCES↗
DOE OSTI2012

Physical mechanism and numerical simulation of the inception of the lightning upward leader

The upward leader is a key physical process of the leader progression model of lightning shielding. The inception mechanism and criterion of the upward leader need further understanding and clarification. Based on leader discharge theory, this paper proposes the critical electric field intensity of the stable upward leader (CEFISUL) and characterizes it by the valve electric field intensity on the conductor surface, E{sub L}, which is the basis of a new inception criterion for the upward leader. Through numerical simulation under various physical conditions, we verified that E{sub L} is mainly related to the conductor radius, and data fitting yields the mathematical expression of E{sub L}. We further establish a computational model for lightning shielding performance of the transmission lines based on the proposed CEFISUL criterion, which reproduces the shielding failure rate of typical UHV transmission lines. The model-based calculation results agree well with the statistical data from on-site operations, which show the effectiveness and validity of the CEFISUL criterion.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2023

Muon capture on the deuteron in chiral effective field theory

Here, we consider the capture of a muon on a deuteron. An uncertainty analysis of the dominant channels is important for a careful analysis of forthcoming experimental data. We quantify the theoretical uncertainties of chiral effective-field-theory predictions of the muon-deuteron capture rate from the relevant neutron-neutron partial wave channels in the final state. We study the dependence on the cutoff used to regularize the interactions, low-energy constants calibrated using different fitting data and strategies, and truncation of the effective-field-theory expansion of the currents. Combining these approaches gives as an estimate of $Γ^{1/2}_{μd}$ = 399.1 ± 7.6 ± 4.4 s –1 for capture from the atomic doublet state, and $Γ^{3/2}_{μd}$= 12.31 ± 0.47 ± 0.04 s –1 for capture from the quartet state and the first and second uncertainties given here are due to the effective field theory truncation error and the uncertainty in the axial radius, respectively.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2025

Elucidation of Marcus Relationships for Hydride Transfer Reactions Involving Transition Metal Hydrides

The rate of hydride transfer from three Ir hydride complexes of the type Cp*Ir( R bpy)H + (Cp* = C 5 Me 5 ; R bpy = 4,4′-R-2,2′-bipyridine, R = OMe, H, CO 2 Me) to six N-methylacridinium ( R Acr + ) acceptors with electronically different substituents in the 2- or 2,7-positions were measured. Using the thermodynamic hydricity of the donors and the hydride affinity of the acceptors the thermodynamic driving forces for hydride transfer were determined. Brønsted plots, which correlate kinetic and thermodynamic hydricity, demonstrate distinct linear free energy relationships for each complex, with different Brønsted α values. Thus, at the same driving force hydride transfer from Cp*Ir( OMe bpy)H + is faster than for Cp*Ir(bpy)H + or Cp*Ir( CO2Me bpy)H + . Experimental and computational analyses are consistent with a concerted hydride transfer mechanism for all Ir complexes. As the thermodynamic driving force increases an earlier transition state is observed and all transition states also include π-stacking interactions between the donor and acceptor, which likely contribute to the different α values. The experimental data fits well to the Marcus model, enabling the determination of reorganization energies (λ) that range from 58 to 69 kcal mol -1 . These are lower than λ values for hydride transfer reactions involving organic donors and acceptors. This work provides a rare example of the correlation of kinetic and thermodynamic hydricity using only experimental data and shows that hydride transfer reactions involving metal hydrides can follow Marcus theory. Furthermore, the findings offer insight into controlling metal-catalyzed hydride transfer reactions, which is valuable for designing improved systems for a range of transformations.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2015

Structure and magnetism of Sr{sub 3}NiSb{sub 2}O{sub 9}

The crystal structure of the perovskite-related oxide Sr{sub 3}NiSb{sub 2}O{sub 9} has been refined from X-ray and neutron powder diffraction data; space group P2{sub 1}/n, a=5.64381(2), b=5.62299(2), c=7.95687(3) Å, β=90.014(2)°. The structure has two crystallographically-distinct six-coordinate cation sites with occupancies Sb 0.97(1), Ni 0.03 and Sb 0.36, Ni 0.64. The magnetic susceptibility has been measured over the temperature range 2≤T/K≤300. Fitting data recorded in the temperature range 150<T/K<300 to the Curie–Weiss law resulted in µ{sub eff}=3.49(1) µ{sub B} per Ni{sup 2+}, θ=−138(1) K. Ferrimagnetic coupling in the vicinity of the antisite defects is suggested to be responsible for the enhanced susceptibility observed below ~90 K. The zero-field cooled susceptibility shows a maximum at 8.7 K that is not observed in the field-cooled susceptibility. Hysteresis is observed in M(H) at 2 K but not at 7.5 K. - Graphical abstract: Antisite defects on the B sites of perovskite-related Sr{sub 3}NiSb{sub 2}O{sub 9} lead to complex magnetic behaviour. - Highlights: • Sr{sub 3}NiSb{sub 2}O{sub 9} is a monoclinic perovskite. • The magnetic behaviour of Sr{sub 3}NiSb{sub 2}O{sub 9} at around 90 K can be attributed to antisite defects. • The magnetic behaviour of Sr{sub 3}NiSb{sub 2}O{sub 9} can be related to that of the relaxor ferromagnet La{sub 3}Ni{sub 2}SbO{sub 9}.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
DOE OSTI2012

MEASURING MICROLENSING USING SPECTRA OF MULTIPLY LENSED QUASARS

We report on a program of spectroscopic observations of gravitationally lensed QSOs with multiple images. We seek to establish whether microlensing is occurring in each QSO image using only single-epoch observations. We calculate flux ratios for the cores of emission lines in image pairs to set a baseline for no microlensing. The offset of the continuum flux ratios relative to this baseline yields the microlensing magnification free from extinction, as extinction affects the continuum and the lines equally. When we find chromatic microlensing, we attempt to constrain the size of the QSO accretion disk. SDSSJ1004+4112 and HE1104-1805 show chromatic microlensing with amplitudes 0.2 < |{Delta}m| < 0.6 and 0.2 < |{Delta}m| < 0.4 mag, respectively. Modeling the accretion disk with a Gaussian source (I{proportional_to}exp (- R{sup 2}/2r{sup 2}{sub s})) of size r{sub s} {proportional_to}{lambda}{sup p} and using magnification maps to simulate microlensing, we find r{sub s} ({lambda}3363) = 7 {+-} 3 lt-day(18.1 {+-} 7.8 Multiplication-Sign 10{sup 15} cm) and p = 1.1 {+-} 0.4 for SDSS1004+4112, and r{sub s} ({lambda}3363) = 6 {+-} 2 lt-day(15.5 {+-} 5.2 Multiplication-Sign 10{sup 15} cm) and p = 0.7 {+-} 0.1 for HE1104-1805. For SDSSJ1029+2623, we find strong chromaticity of {approx}0.4 mag in the continuum flux ratio, which probably arises from microlensing, although not all the available data fit within this explanation. For Q0957+561, we measure B - A magnitude differences of 0.4 mag, much greater than the {approx}0.05 mag amplitude usually inferred from light-curve variability. It may substantially modify the current interpretations of microlensing in this system, likely favoring the hypothesis of smaller sources and/or larger microdeflectors. For HS0818+1227, our data yield possible evidence of microlensing.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2025

Polymer Size–Catalytic Activity Relationships in Solution by Fluorescence Correlation Spectroscopy

Measuring the catalytic activity of specific sizes of polymers with active catalysts in solution is typically challenging, due to limited instrument detection sensitivity and/or dynamic range. Here, a fluorescence correlation spectroscopy (FCS) method is developed to determine the catalytic activity of living polymers of a specific apparent size in solution. Deviation from a single-component FCS data fitting, as assessed by χ2, is also introduced and developed as a “speciation index”—a method to evaluate and track changes in the relative amount of distinct polymer sizes with reaction progress. These methods are enabled by incorporating a selectively reactive fluorescent monomer into growing polydicyclopentadiene or polynorbornene during ring-opening metathesis polymerization (ROMP). Compared to polynorbornene, data showed that catalysts in aggregates of polyDCPD retained higher activity for longer—outcomes not directly inferable from simple diffusional-access predictions. Here, the ability to assign catalytic activity to polymers of specific sizes, and then to determine how this activity evolves with reaction progress, support long-term goals in the development and measurement of nano-objects that possess size-dependent catalytic activity.

Active catalyst↗
DOE OSTI2016

Effect of spin fluctuations on the resistivity of LaCrGe{sub 3}

Resistivity of LaCrGe{sub 3} at low temperatures and high magnetic fields is reported for fields upto 12 T. Spin fluctuations play an important role in this compound whose T{sub C} is 90 K. The normal state above T{sub C} is anomalous in the sense that a T{sup 1/2} term is to be added to the normal phonon contribution [ρ=ρ{sub 0}+aT+bT{sup 1/2}] to get a good fit, whose origin is debatable. Magnetoresistance (MR) vs. applied field H in PM region confirms the presence of strong spin fluctuations in this material. Effect of magnetic field on resistivity shows marked deviation below 170 K. Suppression of resistivity in field up to 12 T near T{sub C} is observed. A negative magnetoresistance (MR) is seen and is consistent with the ferromagnetic behavior. The resistivity data fitted below 80 K could be fitted with an equation ρ(H,T) = ρ{sub 0}(H) + B(H)*T{sup n} where n varies between 2.3 − 2.4, closed to n=2, signifying the presence of possible spin fluctuation.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
DOE OSTI2026

Fit-free optical determination of electronic thermalization time in nematic iron-based superconductors

We present a nematic response function model (NRFM) for fit-free direct extraction of the characteristic time of ultrafast electronic thermalization in iron-based superconductors, materials with electronic nematicity. By combining the NRFM for polarization-dependent pump–probe measurements of electronic nematic response with the two-temperature model (TTM) for sub-picosecond quasiparticle relaxation, we quantify the electronic thermalization timescales and their anisotropy. The nematic response function is modeled as the difference in normalized reflectivity signals, revealing a pronounced sub-picosecond extremum in signal evolution that directly yields the characteristic electronic thermalization time. This method demonstrates that the NRFM is consistent with TTM fits of transient optical response, yielding electronic thermalization time constants on the order of 110–230 fs for the FeSe 1−x Te x and Ba(Fe 0.92 Co 0.08 ) 2 As 2 thin films. Here, the proposed approach can be applied to any material that exhibits electronic nematicity, providing a powerful tool for direct mapping of the relaxation time in nematic materials, avoiding complex experimental data-fitting procedures.

Bartenev, Alexander [University of Puerto Rico, Ma↗
DOE OSTI2018

Land surface model parameter optimisation using in situ flux data: comparison of gradient-based versus random search algorithms (a case study using ORCHIDEE v1.9.5.2)

Land surface models (LSMs), which form the land component of earth system models, rely on numerous processes for describing carbon, water and energy budgets, often associated with highly uncertain parameters. Data assimilation (DA) is a useful approach for optimising the most critical parameters in order to improve model accuracy and refine future climate predictions. In this study, we compare two different DA methods for optimising the parameters of seven plant functional types (PFTs) of the ORCHIDEE LSM using daily averaged eddy-covariance observations of net ecosystem exchange and latent heat flux at 78 sites across the globe. We perform a technical investigation of two classes of minimisation methods – local gradient-based (the L-BFGS-B algorithm, limited memory Broyden–Fletcher–Goldfarb–Shanno algorithm with bound constraints) and global random search (the genetic algorithm) – by evaluating their relative performance in terms of the model–data fit and the difference in retrieved parameter values. We examine the performance of each method for two cases: when optimising parameters at each site independently (“single-site” approach) and when simultaneously optimising the model at all sites for a given PFT using a common set of parameters (“multi-site” approach). We find that for the single site case the random search algorithm results in lower values of the cost function (i.e. lower model–data root mean square differences) than the gradient-based method; the difference between the two methods is smaller for the multi-site optimisation due to a smoothing of the cost function shape with a greater number of observations. The spread of the cost function, when performing the same tests with 16 random first-guess parameters, is much larger with the gradient-based method, due to the higher likelihood of being trapped in local minima. When using pseudo-observation tests, the genetic algorithm results in a closer approximation of the true posterior parameter value in the L-BFGS-B algorithm. We demonstrate the advantages and challenges of different DA techniques and provide some advice on using it for the LSM parameter optimisation.

58 GEOSCIENCES↗
DOE OSTI2012

Formulation of the Multi-Hit Model With a Non-Poisson Distribution of Hits

Purpose: We proposed a formulation of the multi-hit single-target model in which the Poisson distribution of hits was replaced by a combination of two distributions: one for the number of particles entering the target and one for the number of hits a particle entering the target produces. Such an approach reflects the fact that radiation damage is a result of two different random processes: particle emission by a radiation source and interaction of particles with matter inside the target. Methods and Materials: Poisson distribution is well justified for the first of the two processes. The second distribution depends on how a hit is defined. To test our approach, we assumed that the second distribution was also a Poisson distribution. The two distributions combined resulted in a non-Poisson distribution. We tested the proposed model by comparing it with previously reported data for DNA single- and double-strand breaks induced by protons and electrons, for survival of a range of cell lines, and variation of the initial slopes of survival curves with radiation quality for heavy-ion beams. Results: Analysis of cell survival equations for this new model showed that they had realistic properties overall, such as the initial and high-dose slopes of survival curves, the shoulder, and relative biological effectiveness (RBE) In most cases tested, a better fit of survival curves was achieved with the new model than with the linear-quadratic model. The results also suggested that the proposed approach may extend the multi-hit model beyond its traditional role in analysis of survival curves to predicting effects of radiation quality and analysis of DNA strand breaks. Conclusions: Our model, although conceptually simple, performed well in all tests. The model was able to consistently fit data for both cell survival and DNA single- and double-strand breaks. It correctly predicted the dependence of radiation effects on parameters of radiation quality.

62 RADIOLOGY AND NUCLEAR MEDICINE↗