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At least 109 records · Page 6

Models and Algorithms for Equilibrium Analysis of Mixed-Material Nucleic Acid Systems

Dynamic programming algorithms within the NUPACK software suite enable analysis of equilibrium base-pairing properties for complex and test tube ensembles containing arbitrary numbers of interacting nucleic acid strands. Currently, calculations are limited to single-material systems that are either all-RNA or all-DNA. Here, to enable analysis of mixed-material systems that are critical for modern applications in vitro, in situ, and in vivo, we develop physical models and dynamic programming algorithms that allow the material of the system to be specified at nucleotide resolution. Free energy parameter sets are constructed for both RNA/DNA and RNA/2'OMe-RNA mixed-material systems by combining available empirical mixed-material parameters with single-material parameter sets to enable treatment of the full complex and test tube ensembles. New dynamic programming recursions account for the material of each nucleotide throughout the recursive process. For a complex with N nucleotides, the mixed-material dynamic programming algorithms maintain the O(N 3 ) time complexity of the single-material algorithms, enabling efficient calculation of diverse physical quantities over complex and test tube ensembles (e.g., complex partition function, equilibrium complex concentrations, equilibrium base-pairing probabilities, minimum free energy secondary structure(s), and Boltzmann-sampled secondary structures) at a cost increase of roughly 2.0-3.5×. The results of existing single-material algorithms are exactly reproduced when applying the new mixed-material algorithms to single-material systems. Accuracy is significantly enhanced using mixed-material models and algorithms to predict RNA/DNA and RNA/2'OMe-RNA duplex melting temperatures from the experimental literature as well as RNA/DNA melt profiles from new experiments. In conclusion, mixed-material analyses can be performed online using the NUPACK web app (www.nupack.org) or locally using the NUPACK Python module.

2′OMe-RNA

Flight Dynamics Analysis System

Flight Dynamics Analysis System (FDAS) collection of computer programs provides environment for configuration and study of Ada software. Designed to support flight-dynamics research and analysis activities concerning software models, algorithms, and techniques used within flight Dynamics Division at Goddard Space Flight Center. Assists analysts and programmers in building, testing, and evaluating applications software by providing integrated support system for modification and reconfiguration of software. Includes capability of assembling reusable software components into applications programs, and reconfiguring assembled program after partially or fully completed. Developed in Ada for use on DEC VAX computer operating under VMS 4.3 or higher and version 1.3 or higher of VAX Ada Compilation System (ACS).

Tasaki, Keiji

Manufacturing in space: Fluid dynamics numerical analysis

Natural convection in a spherical container with cooling at the center was numerically simulated using the Lockheed-developed General Interpolants Method (GIM) numerical fluid dynamic computer program. The numerical analysis was simplified by assuming axisymmetric flow in the spherical container, with the symmetry axis being a sphere diagonal parallel to the gravity vector. This axisymmetric spherical geometry was intended as an idealization of the proposed Lal/Kroes growing experiments to be performed on board Spacelab. Results were obtained for a range of Rayleigh numbers from 25 to 10,000. For a temperature difference of 10 C from the cooling sting at the center to the container surface, and a gravitional loading of 0.000001 g a computed maximum fluid velocity of about 2.4 x 0.00001 cm/sec was reached after about 250 sec. The computed velocities were found to be approximately proportional to the Rayleigh number over the range of Rayleigh numbers investigated.

Robertson, S. J.

Air-cushion landing systems

Computer program based on heave/pitch analysis simulates dynamic behavior during landing impact and taxi over irregular runway. Program can be adapted to run on any computer with FORTRAN compiler.

Captain, K. M.

Analytical evaluation of tilting proprotor wind tunnel test requirements

Specific test requirements related to the wind tunnel testing of the XV-15 advanced tilt rotor research aircraft were determined. The following analytical tools were developed: (1) digital simulation of the XV-15, incorporating a simplified tunnel support model, control system loop, measurement lags, gust disturbances, and sensor noise, (2) specialization of existing data analysis programs to the high order XV-15 dynamical model (transfer function program, a time series analysis program, an advanced maximum likelihood parameter identification program), (3) several auxiliary programs to provide estimates of damping from transfer functions as well as calculations of model decomposition of system response. The following results were discussed: (1) modelling of the aircraft, instrumentation, and controls, (2) results of the rotor/cantilever wing model and coupled wing, (3) examples of data prediction with system identification techniques, and (4) detailed conclusions and recommendations.

Hall, W. E., Jr.

The N-BOD2 user's and programmer's manual

A general purpose digital computer program was developed and designed to aid in the analysis of spacecraft attitude dynamics. The program provides the analyst with the capability of automatically deriving and numerically solving the equations of motion of any system that can be modeled as a topological tree of coupled rigid bodies, flexible bodies, point masses, and symmetrical momentum wheels. Two modes of output are available. The composite system equations of motion may be outputted on a line printer in a symbolic form that may be easily translated into common vector-dyadic notation, or the composite system equations of motion may be solved numerically and any desirable set of system state variables outputted as a function of time.

Frisch, H. P.

Nacelle-wing integration

The Aerodynamics Division at NASA ARC is participating in the propulsion airframe integration phase of the High Speed Research Program. The two areas of research being pursued include an experimental program and analysis using computational fluid dynamics. The applied Aerodynamics Branch is conducting the experimental program, which will involve a nacelle airframe model that was tested in the Ames 11- by 11-Foot Transonic Wind Tunnel in 1973. This branch will also assess various Euler codes in predicting nacelle airframe interference effects. The goal is to provide the industry with the necessary data and tools to design a high speed civil transport with favorable propulsion airframe interference.

Cappuccio, Gelsomina

Comprehensive rotorcraft analysis methods

The development and application of comprehensive rotorcraft analysis methods in the field of rotorcraft technology are described. These large scale analyses and the resulting computer programs are intended to treat the complex aeromechanical phenomena that describe the behavior of rotorcraft. They may be used to predict rotor aerodynamics, acoustic, performance, stability and control, handling qualities, loads and vibrations, structures, dynamics, and aeroelastic stability characteristics for a variety of applications including research, preliminary and detail design, and evaluation and treatment of field problems. The principal comprehensive methods developed or under development in recent years and generally available to the rotorcraft community because of US Army Aviation Research and Technology Activity (ARTA) sponsorship of all or part of the software systems are the Rotorcraft Flight Simulation (C81), Dynamic System Coupler (DYSCO), Coupled Rotor/Airframe Vibration Analysis Program (SIMVIB), Comprehensive Analytical Model of Rotorcraft Aerodynamics and Dynamics (CAMRAD), General Rotorcraft Aeromechanical Stability Program (GRASP), and Second Generation Comprehensive Helicopter Analysis System (2GCHAS).

Stephens, Wendell B.

Use of Generalized Fluid System Simulation Program (GFSSP) for Teaching and Performing Senior Design Projects at the Educational Institutions

This paper describes the experience of the authors in using the Generalized Fluid System Simulation Program (GFSSP) in teaching Design of Thermal Systems class at University of Alabama in Huntsville. GFSSP is a finite volume based thermo-fluid system network analysis code, developed at NASA/Marshall Space Flight Center, and is extensively used in NASA, Department of Defense, and aerospace industries for propulsion system design, analysis, and performance evaluation. The educational version of GFSSP is freely available to all US higher education institutions. The main purpose of the paper is to illustrate the utilization of this user-friendly code for the thermal systems design and fluid engineering courses and to encourage the instructors to utilize the code for the class assignments as well as senior design projects. The need for a generalized computer program for thermofluid analysis in a flow network has been felt for a long time in aerospace industries. Designers of thermofluid systems often need to know pressures, temperatures, flow rates, concentrations, and heat transfer rates at different parts of a flow circuit for steady state or transient conditions. Such applications occur in propulsion systems for tank pressurization, internal flow analysis of rocket engine turbopumps, chilldown of cryogenic tanks and transfer lines, and many other applications of gas-liquid systems involving fluid transients and conjugate heat and mass transfer. Computer resource requirements to perform time-dependent, three-dimensional Navier-Stokes computational fluid dynamic (CFD) analysis of such systems are prohibitive and therefore are not practical. Available commercial codes are generally suitable for steady state, single-phase incompressible flow. Because of the proprietary nature of such codes, it is not possible to extend their capability to satisfy the above-mentioned needs. Therefore, the Generalized Fluid System Simulation Program (GFSSP1) has been developed at NASA Marshall Space Flight Center (MSFC) as a general fluid flow system solver capable of handling phase changes, compressibility, mixture thermodynamics and transient operations. It also includes the capability to model external body forces such as gravity and centrifugal effects in a complex flow network. The objectives of GFSSP development are: a) to develop a robust and efficient numerical algorithm to solve a system of equations describing a flow network containing phase changes, mixing, and rotation; and b) to implement the algorithm in a structured, easy-to-use computer program. The analysis of thermofluid dynamics in a complex network requires resolution of the system into fluid nodes and branches, and solid nodes and conductors as shown in Figure 1. Figure 1 shows a schematic and GFSSP flow circuit of a counter-flow heat exchanger. Hot nitrogen gas is flowing through a pipe, colder nitrogen is flowing counter to the hot stream in the annulus pipe and heat transfer occurs through metal tubes. The problem considered is to calculate flowrates and temperature distributions in both streams. GFSSP has a unique data structure, as shown in Figure 2, that allows constructing all possible arrangements of a flow network with no limit on the number of elements. The elements of a flow network are boundary nodes where pressure and temperature are specified, internal nodes where pressure and temperature are calculated, and branches where flowrates are calculated. For conjugate heat transfer problems, there are three additional elements: solid node, ambient node, and conductor. The solid and fluid nodes are connected with solid-fluid conductors. GFSSP solves the conservation equations of mass and energy, and equation of state in internal nodes to calculate pressure, temperature and resident mass. The momentum conservation equation is solved in branches to calculate flowrate. It also solves for energy conservation equations to calculate temperatures of solid nodes. The equations are coupled and nonlinear; therefore, they are solved by an iterative numerical scheme. GFSSP employs a unique numerical scheme known as simultaneous adjustment with successive substitution (SASS), which is a combination of Newton-Raphson and successive substitution methods. The mass and momentum conservation equations and the equation of state are solved by the Newton-Raphson method while the conservation of energy and species are solved by the successive substitution method. GFSSP is linked with two thermodynamic property programs, GASP2 and WASP3 and GASPAK4, that provide thermodynamic and thermophysical properties of selected fluids. Both programs cover a range of pressure and temperature that allows fluid properties to be evaluated for liquid, liquid-vapor (saturation), and vapor region. GASP and WASP provide properties of 12 fluids. GASPAK includes a library of 36 fluids. GFSSP has three major parts. The first part is the graphical user interface (GUI), visual thermofluid analyzer of systems and components (VTASC). VTASC allows users to create a flow circuit by a 'point and click' paradigm. It creates the GFSSP input file after the completion of the model building process. GFSSP's GUI provides the users a platform to build and run their models. It also allows post-processing of results. The network flow circuit is first built using three basic elements: boundary node, internal node, and branch.

Majumdar, A. K.

Decennial Specialists' Meeting on Rotorcraft Dynamics, 2nd, Moffett Field, CA, November 7-9, 1984, Proceedings

Various papers on helicopter rotor technology are presented. The subjects considered include: ground resonance analysis using a substructure modelling approach, aerolastic stability of a bearingless rotor, experimentally determined flutter from two and three-bladed model bearingless rotors in hover, lifting surface theory for a helicopter rotor in forward flight, aeroelastic considerations for torsionally soft rotors, and restructuring of a rotor analysis program. Also discussed are: dynamic inflow and its effect on experimental correlations, flap-lag-torsion instability in forward flight, dynamic stability of a bearingless circulation control rotor blade in hover, dynamic response characteristics of a circulation control rotor model pneumatic system, the relations between vibratory loads and airframe vibrations, coupled rotor body vibrations with in-plane degrees of freedom, helicopter vibration reduction concepts.

Source record

Experiences at Langley Research Center in the application of optimization techniques to helicopter airframes for vibration reduction

A NASA/industry rotorcraft structural dynamics program known as Design Analysis Methods for VIBrationS (DAMVIBS) was initiated at Langley Research Center in 1984 with the objective of establishing the technology base needed by the industry for developing an advanced finite-element-based vibrations design analysis capability for airframe structures. As a part of the in-house activities contributing to that program, a study was undertaken to investigate the use of formal, nonlinear programming-based, numerical optimization techniques for airframe vibrations design work. Considerable progress has been made in connection with that study since its inception in 1985. This paper presents a unified summary of the experiences and results of that study. The formulation and solution of airframe optimization problems are discussed. Particular attention is given to describing the implementation of a new computational procedure based on MSC/NASTRAN and CONstrained function MINimization (CONMIN) in a computer program system called DYNOPT for the optimization of airframes subject to strength, frequency, dynamic response, and fatigue constraints. The results from the application of the DYNOPT program to the Bell AH-1G helicopter are presented and discussed.

Murthy, T. Sreekanta

Experiences at Langley Research Center in the application of optimization techniques to helicopter airframes for vibration reduction

A NASA/industry rotorcraft structural dynamics program known as Design Analysis Methods for VIBrationS (DAMVIBS) was initiated at Langley Research Center in 1984 with the objective of establishing the technology base needed by the industry for developing an advanced finite-element-based vibrations design analysis capability for airframe structures. As a part of the in-house activities contributing to that program, a study was undertaken to investigate the use of formal, nonlinear programming-based, numerical optimization techniques for airframe vibrations design work. Considerable progress has been made in connection with that study since its inception in 1985. This paper presents a unified summary of the experiences and results of that study. The formulation and solution of airframe optimization problems are discussed. Particular attention is given to describing the implementation of a new computational procedure based on MSC/NASTRAN and CONstrained function MINimization (CONMIN) in a computer program system called DYNOPT for the optimization of airframes subject to strength, frequency, dynamic response, and fatigue constraints. The results from the application of the DYNOPT program to the Bell AH-1G helicopter are presented and discussed.

Sreekanta Murthy, T.

Runway configuration improvement programming model.

The basic objectives of the study were to subject a set of runway configurations to cost analysis and to develop a dynamic programming model which would enable an airport to economically match the ground capacity to its air traffic demand. Quantitative differences in the capacity of runway configurations result from the various aircraft/aircraft and aircraft/air-system interactions. A problem formulation and solution procedure is presented which is intended to be a meaningful technique for the long-range planning of runway expansion programs.

Yu, J. C.

Simulation capability for dynamics of rotating counterweight space stations.

An analysis and computer program were prepared to realistically simulate the dynamic behavior of a class of space stations consisting of two end bodies separated by a connecting structure. The shape and mass distribution of the flexible end bodies are arbitrary; the connecting structure is flexible but massless and is capable of deployment and retraction. Fluid flowing in a piping system and rigid moving masses, representing a cargo elevator or crew members, have been modeled. Connecting structure characteristics, control systems, and externally applied loads are modeled in easily replaced subroutines. Subroutines currently available include a telescopic beam-type connecting structure as well as attitude, deployment, spin, and wobble control. In addition, a unique mass balance control system was developed to sense and balance mass shifts due to the motion of a cargo elevator. The mass of the cargo may vary through a large range. Numerical results are discussed for various types of runs.

Austin, F.