Discovery of Potent and Orally Bioavailable Pyridine N-Oxide-Based Factor XIa Inhibitors through Exp
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Xu, Guozhang↗
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Impact of Layer Thickness on the Charge Carrier and Spin Coherence Lifetime in Two-Dimensional Layered Perovskite Single Crystals
In this paper, we report the charge carrier recombination rate and spin coherence lifetimes in single crystals of two-dimensional (2D) Ruddlesden–Popper perovskites PEA 2 PbI 4 ·(MAPbI 3 ) n-1 (PEA, phenethylammonium; MA, methylammonium; n = 1, 2, 3, 4). Layer thickness-dependent charge carrier recombination rates are observed, with the fastest rates for n = 1 because of the large exciton binding energy, and the slowest rates are observed for n = 2. Room-temperature spin coherence times also show a nonmonotonic layer thickness dependence with an increasing spin coherence lifetime with increasing layer thickness from n = 1 to n = 4, followed by a decrease in lifetime from n = 4 to ∞. The longest coherence lifetime of ~7 ps is observed in the n = 4 sample. Our results are consistent with two contributions: Rashba splitting increases the spin coherence lifetime going from the n = ∞ to the layered systems, while phonon scattering, which increases for smaller layers, decreases the spin coherence lifetime. Finally, the interplay between these two factors contributes to the layer thickness dependence.
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
Connecting Geomechanical Properties with Potential for Proppant Embedment and Production Decline for the Emerging Caney Shale, Oklahoma
The Caney Shale is emerging as a target for hydrocarbon production, creating opportunities to study rock mechanical origins of observed/anticipated challenges to effective and sustained stimulation. Here we examine five subunits within the Caney, two of which are dubbed “ductile” and three of which are dubbed “reservoir” rock types. The “ductile” versus “reservoir” identification is initially based on elastic properties ascertained from well logs. By comparing core-based mechanical tests, it is found nominally ductile and reservoir layers do not differ in terms of brittleness, but instead the nominally ductile layers tend to be weaker and more prone to creep deformation compared to the nominally more brittle reservoir layers. This difference in mechanical properties is shown to generate higher susceptibility to proppant embedment in the weaker and more creep-prone layers. Specifically, over a 5-year period, the creep is expected to have little impact on reservoir layers but is predicted to reduce propped fracture aperture by a factor of 2 in the ductile layers.
Benge, Margaret↗
Preparation and characterization of Pb(Lu1/2Nb1/2)O3-Pb(Ni1/3Nb2/3)O3-PbTiO3 ternary ferroelectric ceramics with high piezoelectric constant
Highlights: • PLN-PNN-PT ternary ferroelectric systems were prepared by two-step method. • PLN-PNN-PT ceramics exhibit typical relaxor behavior. • 0.17PLN-0.47PNN-0.36PT ceramic has optimal properties (T{sub C} ∼ 142 °C, d{sub 33} ∼ 378 pC/N). - Abstract: Pb(Lu{sub 1/2}Nb{sub 1/2})O{sub 3}-Pb(Ni{sub 1/3}Nb{sub 2/3})O{sub 3}-PbTiO{sub 3} ferroelectric ceramics were successfully prepared by a modified two-step columbite precursor method. The structural, dielectric, ferroelectric and piezoelectric properties were characterized by X-ray diffraction, ferroelectric and dielectric measurements. All the obtained samples have pure perovskite structure. The composition of 0.17PLN-0.47PNN-0.36PT within morphotropic phase boundary exhibits optimal properties with piezoelectric coefficient d{sub 33} = 378 pC/N, Curie temperature Tc = 142 °C, dielectric constant ε΄ = 4700, dielectric loss tangent tanδ = 0.05, remnant polarization Pr = 27.1 μC/cm{sup 2} and coercive field Ec = 8.89 KV/cm. According to Curie-Weiss Law and Lorentz-type quadratic relationship, the dielectric behavior was studied and the relaxor factor γ is between 1.55–1.87, indicating the character of diffuse phase transition of the Pb(Lu{sub 1/2}Nb{sub 1/2})O{sub 3}-Pb(Ni{sub 1/3}Nb{sub 2/3})O{sub 3}-PbTiO{sub 3} ceramics. The excellent piezoelectric properties and high Curie temperature make this system a promising material for high-power transducer applications in a broad temperature range.
36 MATERIALS SCIENCE↗
Application of a lower-upper implicit scheme and an interactive grid generation for turbomachinery flow field simulations
A finite-volume lower-upper (LU) implicit scheme is used to simulate an inviscid flow in a tubine cascade. This approximate factorization scheme requires only the inversion of sparse lower and upper triangular matrices, which can be done efficiently without extensive storage. As an implicit scheme it allows a large time step to reach the steady state. An interactive grid generation program (TURBO), which is being developed, is used to generate grids. This program uses the control point form of algebraic grid generation which uses a sparse collection of control points from which the shape and position of coordinate curves can be adjusted. A distinct advantage of TURBO compared with other grid generation programs is that it allows the easy change of local mesh structure without affecting the grid outside the domain of independence. Sample grids are generated by TURBO for a compressor rotor blade and a turbine cascade. The turbine cascade flow is simulated by using the LU implicit scheme on the grid generated by TURBO.
Choo, Yung K.↗
Application of a lower-upper implicit scheme and an interactive grid generation for turbomachinery flow field simulations
A finite-volume lower-upper (LU) implicit scheme is used to simulate an inviscid flow in a turbine cascade. This approximate factorization scheme requires only the inversion of sparse lower and upper triangular matrices, which can be done efficiently without extensive storage. As an implicit scheme it allows a large time step to reach the steady state. An interactive grid generation program (TURBO), which is being developed, is used to generate grids. This program uses the control point form of algebraic grid generation which uses a sparse collection of control points from which the shape and position of coordinate curves can be adjusted. A distinct advantage of TURBO compared with other grid generation programs is that it allows the easy change of local mesh structure without affecting the grid outside the domain of dependence. Sample grids are generated by TURBO for a compressor rotor blade and a turbine cascade. The turbine cascade flow is simulated by using the LU implicit scheme on the grid generated by TURBO.
Choo, Yung K.↗
The interaction of soybean reticulon homology domain protein (GmRHP) with Soybean mosaic virus encoded P3 contributes to the viral infection
Highlights: • GmRHP interacted with SMV-P3 in a screening of soybean cDNAs using mYTHS. • The interaction between GmRHP and SMV-P3 was confirmed using BiFC. • GmRHP's expression promoted TuMV replication and spread in N. benthamiana. • The interaction between SMV-P3 and GmRHP may contribute to the potyvirus infection. Soybean mosaic virus (SMV), a member of the Potyvirus genus, is a prevalent and devastating viral pathogen in soybean-growing regions worldwide. Potyvirus replication occurs in the 6K2-induced viral replication complex at endoplasmic reticulum exit sites. Potyvirus-encoded P3 is also associated with the endoplasmic reticulum and is as an essential component of the viral replication complex, playing a key role in viral replication. This study provides evidence that the soybean (Glycine max) reticulon homology domain protein (designated as GmRHP) interacts with SMV-P3 by using a two-hybrid yeast system to screen a soybean cDNA library. A bimolecular fluorescence complementation assay further confirmed the interaction, which occurred on the cytomembrane, endoplasmic reticulum and cytoskeleton in Nicotiana benthamiana cells. The transient expression of GmRHP can promote the coupling of Turnip mosaic virus replication and cell-to-cell movement in N. benthamiana. The interaction between the membrane protein SMV-P3 and GmRHP may contribute to the potyvirus infection, and GmRHP may be an essential host factor for P3's involvement in potyvirus replication.
60 APPLIED LIFE SCIENCES↗
Long non-coding RNA SBF2-AS1 promotes hepatocellular carcinoma progression through regulation of miR-140-5p-TGFBR1 pathway
Highlights: • LncRNA SBF2-AS1 was overexpressed in HCC tissues and cell lines. • Up-regulation of lncRNA SBF2-AS1 was associated with poor clinical features and prognosis in HCC patients. • Knockdown of lncRNA SBF2-AS1 suppressed HCC progression by regulation of miR-140-5p-TGFBR1 pathway. A growing number of studies has suggested that long non-coding RNAs (lncRNAs) exert essential roles in the development and progression of hepatocellular carcinoma (HCC). However, the roles of lncRNA and its molecular mechanism in HCC are largely unknown. In the present study, the functions and molecular mechanisms of a novel lncRNA, SET-binding factor 2 (SBF2) antisense RNA1 (SBF2-AS1), were investigated in HCC tissues and cell lines. We found that the expression levels of SBF2-AS1 were significantly up-regulated in HCC tissues and correlated with poor prognosis. SBF2-AS1 knockdown could inhibit the proliferation of HCC cells and attenuate the development of HCC tumor in vivo. Moreover, wound healing and Transwell assays revealed that down-regulation of SBF2-AS1 suppressed the migration and invasion of HCC cells by modulating epithelial-mesenchymal transition (EMT) ability. Mechanistically, we observed that SBF2-AS1 served as a competing endogenous RNA (ceRNA) of miR-140–5p. Subsequently, transforming growth factor beta receptor 1 (TGFBR1) was certified as a direct target of miR-140–5p and enforcing SBF2-AS1 expression elevated TGFBR1 expression in HCC. Taken together, our study suggested that SBF2-AS1 modulated TGFBR1 through sponging miR-140–5p in HCC development and progression indicating that SBF2-AS1 might be further chosen as a potential anticancer therapeutic target and a promising prognostic biomarker for HCC.
60 APPLIED LIFE SCIENCES↗
AMOT is required for YAP function in high glucose induced liver malignancy
Highlights: • AMOT is identified to be O-GlcNAcylated. • High glucose stimulates expression and O-GlcNAcylation of AMOT. • AMOT is a stimulator of YAP in high glucose level, whereas a suppressor of YAP in normal glucose level. • High expression and nuclear accumulation of AMOT and YAP are found in high glucose mice. AMOT has been identified as a YAP interactor. However, how AMOT regulates YAP remains unclear and controversy. Here, we identified that besides YAP, AMOT was another Hippo signaling core factor which could be O-GlcNAcylated. Moreover, high glucose (HG) was able to enhance the expression and O-GlcNAcylation of AMOT. We also found that HG stimulated nuclear accumulation, transcription activity, interaction with transcription factor and transcription of target genes of YAP via AMOT, while AMOT acted as a suppressor of YAP in normal glucose level. Finally, we observed the upregulation and nuclear accumulation of AMOT and YAP in Streptozocin (STZ) induced high glucose mice. Collectively, we have uncovered that AMOT acts as a YAP stimulator in high glucose level. Targeting the aberrantly regulated core factors in Hippo pathway might be a more effective therapeutic approach for liver cancer associated with possibly diabetes.
60 APPLIED LIFE SCIENCES↗
Energy Analysis of Combi Heat Pump System Configurations for Space Conditioning and Domestic Hot Water Heating in Residential Buildings
Combi heat pump systems, also referred to multifunctional variable refrigerant flow heat recovery (MF-VRFHR) systems, are specifically designed for residential applications to manage both space conditioning and domestic hot water (DHW). They have attracted attention due to their potential for energy conservation through heat recovery. The incorporation of a hot water tank introduces various system configurations, each characterized by distinct pros and cons related to energy efficiency, system stability, and maintenance. Despite this, a critical gap exists as the specific energy performance remains unquantified under diverse operational modes (e.g., heating mode and heat recovery mode). This paper aims to bridge this gap by conducting a comprehensive comparative analysis of two prevalent system configurations while considering feasible proposed control logics. Configuration 1 integrates a separate hot water tank and a refrigerant-to-water heat exchanger (HEX), also known as a Hydro Kit while Configuration 2 incorporates a refrigerant-wrapped hot water tank. To facilitate this analysis, we developed high-fidelity system models for both configurations in Modelica, capturing system dynamics and detailed control sequences effectively. These system models were built upon the TIL library for HVAC equipment components and the Buildings library for residential building thermal load calculations. The validation of the simulation testbed utilized data from experiments conducted in the PNNL lab home for Configuration 1. To establish the simulation testbed for Configuration 2, we extended the modeling setup derived from Configuration 1. This extension specifically involved substituting the separate hot water tank and Hydro Kit with a refrigerant-wrapped hot water tank of similar sizing sourced from an actual product. The simulation analysis of heating-only and heat recovery modes reveals that Configuration 2 not only saves energy and maintains warmer tank temperatures but also demonstrates faster water heating capabilities. This is attributed to decreased energy loss and improved heat transfer. The study encompasses a wide range of scenarios, considering diverse thermal loads and water usage patterns across heating and heat recovery modes. Overall, the comprehensive results indicate that Configuration 2 achieves energy savings ranging from 3.5% to 12.2% compared to Configuration 1, depending on factors such as water usage patterns, thermal loads, and operational modes.
Configuration, Comparison, Multi-functional, Resid↗
Transient Gene and miRNA Expression Profile Changes of Confluent Human Fibroblast Cells in Space
Microgravity or an altered gravity environment from the static 1 gravitational constant has been shown to influence global gene expression patterns and protein levels in cultured cells. However, most of the reported studies conducted in space or using simulated microgravity on the ground have focused on the growth or differentiation of the cells. Whether non-dividing cultured cells will sense the presence of microgravity in space has not been specifically addressed. In an experiment conducted on the International Space Station, confluent human fibroblast cells were fixed after being cultured in space for 3 and 14 days for investigations of gene and miRNA (microRNA) expression profile changes in these cells. A fibroblast is a type of cell that synthesizes the extracellular matrix and collagen, the structural framework for tissues, and plays a critical role in wound healing and other functions. Results of the experiment showed that on Day 3, both the flown and ground cells were still proliferating slowly even though they were confluent, as measured by the expression of the protein Ki-67 positive cells, and the cells in space grew slightly faster. Gene and miRNA expression data indicated activation of NF(sub kappa)B (nuclear factor kappa-light-chain-enhancer of activated B cells) and other growth related pathways involving HGF and VEGF in the flown cells. On Day 14 when the cells were mostly non-dividing, the gene and miRNA expression profiles between the flight and ground samples were indistinguishable. Comparison of gene and miRNA expressions in the Day 3 samples in respect to Day 14 revealed that most of the changes observed on Day 3 were related to cell growth for both the flown and ground cells. Analysis of cytoskeleton changes by immunohistochemistry staining of the cells with antibodies for alpha-tubulin showed no difference between the flight and ground samples. Results of our study suggest that in true non-dividing human fibroblast cells, microgravity in space has little effect on the gene and miRNA expression. Gene and miRNA expression changes were observed in cells that were confluent, but still proliferating slowly. The faster growth in the flown cells was associated with the activation of NF(sub kappa)B pathways which triggers the expression of several growth factors and the suppression of the cell cycle checkpoint.
Zhang, Ye↗
Comparative Small-Signal Stability Analysis of Grid-Forming and Grid-Following Inverters in Low-Inertia Power Systems: Preprint
Inverter-based resources (IBRs) are gradually replacing conventional fossil energy in modern power systems, which could make the system susceptible due to insufficient inertia, especially when moving towards a 100% inverter-based power grid. Grid-forming (GFM) and grid-following (GFL) controls are two common inverter control algorithms. However, the corresponding stability issues along with a comparative study on low-inertia power systems should still be investigated. This paper focuses on small-signal stability and conducts a comprehensive analysis of GFM and GFL controls, with emphases on the interactions between synchronous generators and IBRs. The detailed modeling of GFM and GFL inverters, and synchronous generators (SGs) are established. The coupling mechanism of IBRs and SGs is then conducted through participation factor analysis. The impacts of critical parameters on system stability are finally identified. The theoretical analyses are validated through time-domain simulation in MATLAB/Simulink.
grid-following↗
Near-adjacent heavy lanthanide separation and sensing using dimerizing lanmodulins
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Biological and medical sciences↗
Systems Biology to Improve Camelina Seed and Oil Quality Traits (Final Report)
Camelina has great potential to become a sustainable high energy-yielding source of biofuel in the US. This project aims to address two critical needs for realizing this potential: to increase seed size and oil content for improved seedling establishment and oil yield, and to optimize oil quality for satisfactory fuel properties. Specifically, quantitative trait loci (QTL) and molecular markers associated with these important traits will be identified using high-density genome maps and repeated field trials in Montana and Washington states. Modern genomics and biotechnological approaches will be employed to uncover novel molecular mechanisms (including genes and gene networks regulated by microRNAs and transcription factors) regulating fatty acid modification, oil accumulation and seed size in Camelina.
59 BASIC BIOLOGICAL SCIENCES↗
Investigation of hydrometeorological influences on reservoir releases using explainable machine learning methods
Long short-term memory (LSTM) networks have demonstrated successful applications in accurately and efficiently predicting reservoir releases from hydrometeorological drivers including reservoir storage, inflow, precipitation, and temperature. However, due to its black-box nature and lack of process-based implementation, we are unsure whether LSTM makes good predictions for the right reasons. In this work, we use an explainable machine learning (ML) method, called SHapley Additive exPlanations (SHAP), to evaluate the variable importance and variable-wise temporal importance in the LSTM model prediction. In application to 30 reservoirs over the Upper Colorado River Basin, United States, we show that LSTM can accurately predict the reservoir releases with NSE ≥ 0.69 for all the considered reservoirs despite of their diverse storage sizes, functionality, elevations, etc. Additionally, SHAP indicates that storage and inflow are more influential than precipitation and temperature. Moreover, the storage and inflow show a relatively long-term influence on the release up to 7 days and this influence decreases as the lag time increases for most reservoirs. These findings from SHAP are consistent with our physical understanding. However, in a few reservoirs, SHAP gives some temporal importances that are difficult to interpret from a hydrological point of view, probably because of its ignorance of the variable interactions. SHAP is a useful tool for black-box ML model explanations, but the hydrological processes inferred from its results should be interpreted cautiously. More investigations of SHAP and its applications in hydrological modeling is needed and will be pursued in our future study.
54 ENVIRONMENTAL SCIENCES↗
Modeling the interaction of ultrasound with pores
Factors that affect ultrasonic velocity sensing of density during consolidation of metal powders are examined. A comparison is made between experimental results obtained during the final stage of densification and the predictions of models that assume either a spherical or a spheroidal pore shape. It is found that for measurements made at low frequencies during the final stage of densification, relative density (pore fraction) and pore shape are the two most important factors determining the ultrasonic velocity, the effect of pore size is negligible.
Lu, Yichi↗