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At least 109 records · Page 6

Stable hypermutators revealed by the genomic landscape of genes involved in genome stability among yeast species

Mutator phenotypes are short-lived due to the rapid accumulation of deleterious mutations. Yet, recent observations reveal that certain fungi can undergo prolonged accelerated evolution after losing genes involved in DNA repair. Here, we surveyed 1,154 yeast genomes representing nearly all known yeast species of the subphylum Saccharomycotina (phylum Ascomycota) to examine the relationship between reduced gene repertoires broadly associated with genome stability functions (e.g., DNA repair, cell cycle) and elevated evolutionary rates. We identified three distantly related lineages—encompassing 12% of species—that had both the most streamlined sets of genes involved in genome stability (specifically DNA repair) and the highest evolutionary rates in the entire subphylum. Two of these “faster-evolving lineages” (FELs)—a subclade within the order Pichiales and the Wickerhamiella/Starmerella (W/S) clade (order Dipodascales)—are described here for the first time, while the third corresponds to a previously documented Hanseniaspora FEL. Examination of genome stability gene repertoires revealed a set of genes predominantly absent in these three FELs, suggesting a potential role in the observed acceleration of evolutionary rates. In the W/S clade, genomic signatures are consistent with a substantial mutational burden, including pronounced A|T bias and endogenous DNA damage. Interestingly, we found that the W/S clade also contains DNA repair genes possibly acquired through horizontal gene transfer, including a photolyase of bacterial origin. These findings highlight how hypermutators can persist across macroevolutionary timescales, potentially linked to the loss of genes related with genome stability, with horizontal gene transfer as a possible avenue for partial functional compensation.

DNA repair

How Snow Drives the Seasonal Evolution of Land and Sea Surface Albedos in the Alaskan High Arctic: Final Technical Report

The purpose of the project was to observe and quantify temporal variation in snow albedo and snow characteristics across the Arctic coastal landscape as winter transitioned into spring and snowmelt occurred, both on tundra and sea ice. This transition is bounded by fully snow-covered landscapes with broadband albedos of approximately 0.8 and snow-free landscapes with albedos of 0.15 (tundra or ponded sea ice). For these landscapes, we monitored the spring surface characteristics and radiative properties nearly daily at three locations on or near the Department of Energy ARM North Slope of Alaska (NSA) User Facility in Utqiagvik, Alaska: the central NSA Facility (hereafter called ARM), one near NSA-E12 (BEO), and one on the sea ice of Elson Lagoon (ICE) during three melt seasons (2019, 2022, and 2024). The field campaign component of this award was named SALVO ( S now AL bedo E VO lution). Typical field seasons began in mid-April and lasted until mid-June. Main measurements included snow depth (at 1-m intervals), broadband albedo (at 5-m intervals), spectral albedo (at 5- m intervals), and multiple digital images. Orthomosaics were converted into binary images to determine the snow-covered fraction over time across various landscapes. Additional measurements included basic weather data and snow-ground (or ice) interface temperatures. Sky conditions were observed and photographed to help assess albedo values.

54 ENVIRONMENTAL SCIENCES

Continental rift evolution and drainage reorganization along the Dead Sea rift since the Miocene

The Dead Sea fault is a section of the Arabian-African plate boundary. Widespread field relations indicate that three major drainage systems (stages) occupied the landscape west of the Dead Sea fault since its initiation at ca. 20 Ma. Specifically, (1) an early to middle Miocene drainage system, only minorly reconfigured by the fault (all sediments of this system belong to the Hazeva Formation); (2) a late Miocene to early Pleistocene fault-parallel drainage system named Paran-Neqarot (all sediments of this system belong to the Arava and Zehiha Formations; and (3) the early Pleistocene to present drainage configuration. The temporal and spatial frameworks of drainage stage 1 are generally constrained by radiometric dating of interfingering volcanic units, and the onset and temporal and spatial frameworks of drainage stage 3 are well constrained by cosmogenic 10 Be surface exposure ages. The timing and longevity of the rift-parallel drainage (stage 2) have until now been evasive to direct dating. The overall time gap between stages 1 and 3 is ~12–13 million years. Thus, an early age (within this time gap) of stage 2 would imply an immediate response of drainage reorganization to rift tectonics, while a later age of this drainage system would imply a delayed response. We present 11 10 Be- 26 Al cosmogenic burial ages of alluvial and colluvial units related to the fault-parallel drainage system (stage 2), which collectively constrain the time of deposition of the Arava Formation sediments in the central Negev to ca. 8 Ma. The general lack of stratigraphic order, together with the large dispersion of ages both across and within the sampling sites, attests to significant recycling of sediments from drainage stage 1 into the Arava Formation deposits. The termination of Arava and Zehiha Formation sediment deposition at ca. 1.8 Ma was determined previously using cosmogenic exposure ages of desert pavements that cover the formations. Combining the previously published data with our new data, we established the longevity and character of the Paran-Neqarot drainage system. In conlcusion, this framework highlights the temporal aspect of drainage system build-up and collapse as it responded to transform and extensional plate boundary tectonics during the Neogene.

58 GEOSCIENCES

Evolution of Hot Gas in Elliptical Galaxies

This theory grant was awarded to study the curious nature, origin and evolution of hot gas in elliptical galaxies and their surrounding groups. Understanding the properties of this X-ray emitting gas has profound implications over the broad landscape of modern astrophysics: cosmology, galaxy formation, star formation, cosmic metal enrichment, galactic structure and dynamics, and the physics of hot gases containing dust and magnetic fields. One of our principal specific objectives was to interpret the marvelous new observations from the XMM and Chandru satellite X-ray telescopes.

Mathews, William G.

Hyper-Spectral Infrared Remote Sensing for Wildfire-Related Research and Air Quality Monitoring

The National Airborne Sounder Testbed-Interferometer (NAST-I) is an airborne FTS remote sensor that nominally flies on NASA high-altitude aircraft to serve as a spaceborne instrument simulator. NAST-I continues to serve as a pathfinder for future satellite FTS systems and the next generation advanced atmospheric sounders in general. NAST-I provides high resolution spectrally resolved infrared radiances. NAST-I retrieval products characterizing the surface (i.e., skin temperature and spectral emissivity), atmosphere (i.e., profiles of temperature, moisture, ozone, carbon monoxide, and other trace species), and clouds (e.g., optical depth, particle size, temperature, and height) can be used to support fire-related monitoring and research. NAST-I provided 3-d characterizations of wildfire-induced plumes of CO during the FIREX-AQ field campaign (conducted during 2019) which showed the intensity and size evolution of wildfire plumes at high spatial and temporal resolutions. Wildfire-induced CO plumes, in conjunction with their evolution, transport, and age have been identified and recently published in scientific journals. Other research applications, such as surface emissivity changes due to fire burning of ground landscape, have been under investigation. These products could be used in support of wildfire management to better inform decision making and operations for pre-, active, and post-fire environments.

remote sensing

Physically-based parameterization of spatially variable soil and vegetation using satellite multispectral data

A stochastic-geometric landsurface reflectance model is formulated and tested for the parameterization of spatially variable vegetation and soil at subpixel scales using satellite multispectral images without ground truth. Landscapes are conceptualized as 3-D Lambertian reflecting surfaces consisting of plant canopies, represented by solid geometric figures, superposed on a flat soil background. A computer simulation program is developed to investigate image characteristics at various spatial aggregations representative of satellite observational scales, or pixels. The evolution of the shape and structure of the red-infrared space, or scattergram, of typical semivegetated scenes is investigated by sequentially introducing model variables into the simulation. The analytical moments of the total pixel reflectance, including the mean, variance, spatial covariance, and cross-spectral covariance, are derived in terms of the moments of the individual fractional cover and reflectance components. The moments are applied to the solution of the inverse problem: The estimation of subpixel landscape properties on a pixel-by-pixel basis, given only one multispectral image and limited assumptions on the structure of the landscape. The landsurface reflectance model and inversion technique are tested using actual aerial radiometric data collected over regularly spaced pecan trees, and using both aerial and LANDSAT Thematic Mapper data obtained over discontinuous, randomly spaced conifer canopies in a natural forested watershed. Different amounts of solar backscattered diffuse radiation are assumed and the sensitivity of the estimated landsurface parameters to those amounts is examined.

Jasinski, Michael F.

Reviews and syntheses: Variable inundation across Earth's terrestrial ecosystems

Abstract. The structure, function, and dynamics of Earth's terrestrial ecosystems are profoundly influenced by how often (frequency) and how long (duration) they are inundated with water. A diverse array of natural and human-engineered systems experience temporally variable inundation whereby they fluctuate between inundated and non-inundated states. Variable inundation spans extreme events to predictable sub-daily cycles. Variably inundated ecosystems (VIEs) include hillslopes, non-perennial streams, wetlands, floodplains, temporary ponds, tidal systems, storm-impacted coastal zones, and human-engineered systems. VIEs are diverse in terms of inundation regimes, water chemistry and flow velocity, soil and sediment properties, vegetation, and many other properties. The spatial and temporal scales of variable inundation are vast, ranging from sub-meter to whole landscapes and from sub-hourly to multi-decadal. The broad range of system types and scales makes it challenging to predict the hydrology, biogeochemistry, ecology, and physical evolution of VIEs. Despite all experiencing the loss and gain of an overlying water column, VIEs are rarely considered together in conceptual, theoretical, modeling, or measurement frameworks and approaches. Studying VIEs together has the potential to generate mechanistic understanding that is transferable across a much broader range of environmental conditions, relative to knowledge generated by studying any one VIE type. We postulate that enhanced transferability will be important for predicting changes in VIE function in response to global change. Here we aim to catalyze cross-VIE science that studies drivers and impacts of variable inundation across Earth's VIEs. To this end, we complement expert mini-reviews of eight major VIE systems with overviews of VIE-relevant methods and challenges associated with scale. We conclude with perspectives on how cross-VIE science can derive transferable understanding via unifying conceptual models in which the impacts of variable inundation are studied across multi-dimensional environmental space.

54 ENVIRONMENTAL SCIENCES

Impact craters on Venus

Compared with volcanism and tectonism, impact cratering on Venus has played an overall minor role in sculpting the present-day landscape. The study of Venus impact craters is vital to help place the chronology of the geologic features on the surface in the context of the planet's geological evolution. The degradation of impact craters also provides information on surface and interior processes, particularly alteration by tectonism and volcanism. Through orbit 1422, Magellan mapped about 450 impact craters, with diameters ranging from 2 to 275 km, within an area of about 226 million sq km, or 49 percent of the planet's surface. These craters and their associated deposits show surprisingly little evidence of degradation at the 75 m/pixel resolution of the Magellan SAR. Remarkably few craters in the Magellan images appear to be in the process of being buried by volcanic deposits or destroyed by tectonic activity.

Schaber, G. G.

Multi-purpose quantum laboratories from superconducting circuits

Superconducting circuits (SCs) are the cornerstone of modern quantum technology, enabling scalable computing through coherent control of macroscopic quantum states. Through a legacy that predates modern quantum computing, SCs have emerged as high-precision instruments for discovery. In this review, we highlight the role of SCs as general-purpose quantum laboratories, outlining the emerging landscape of correlated matter-circuit science. We review and unify the capabilities of superconducting quantum hardware across condensed matter, high energy and quantum information sciences. We trace the technical evolution of these architectures, illustrating how their foundational development has culminated in a toolkit for resolving the complexities of macroscopic quantum states.

Arora, Arpit [UCLA, Los Angeles (main); UCLA; Haim

Tracking dissociation pathways of nitrobenzene via mega-electron-volt ultrafast electron diffraction

As the simplest nitroaromatic compound, nitrobenzene is an interesting model system to explore the rich photochemistry of nitroaromatic compounds. Previous investigations of nitrobenzene's photochemical dynamics have probed structural and electronic properties. These investigations paint, at times, a convoluted and sometimes contradictory description of the photochemical landscape. Here, we investigate the ultrafast dynamics of nitrobenzene triggered by photoexcitation at 267 nm for the first time using a structural probe with femtosecond time resolution. Our probe complements previous measurements of nitrobenzene's electronic structure evolution and aids in determining the photochemical dynamics with less ambiguity. We employ megaelectronvolt ultrafast electron diffraction to follow nitrobenzene's structural evolution within the first 5 ps after photoexcitation. We observe ground state recovery within 160 ± 60 fs through nonadiabatic dynamics. Based on comparisons of the experimental signal with molecular dynamics simulations, we exclude a significant population of the triplet manifold. Furthermore, we do not observe fragmentation of nitrobenzene within the investigated time window, which indicates that previously observed photofragmentation reactions take place in the vibrationally 'hot' ground state on timescales considerably beyond 5 ps.

74 ATOMIC AND MOLECULAR PHYSICS

Observation of Iso-Symmetric Structural and Lifshitz Transitions in Quasi-One-Dimensional CrNbSe 5

Chalcogenides-rich transition metal compounds host a rich landscape of emergent quantum phenomena that are intimately governed by their quasi-onedimensional chemical-bonding frameworks and their response to external perturbations such as pressure. Here, we report a pressure-induced iso-symmetric structural transition in the quasi-one-dimensional compound CrNbSe 5 , in which the electronic ground state is controlled not by symmetry breaking but by a continuous reorganization of local bonding interactions. Applied pressure reversibly tunes CrNbSe 5 between semiconducting and semimetallic states, enabling access to low- and high-carrier electronic regimes through direct modulation of metal−chalcogen bonding. High-pressure singlecrystal X-ray diffraction directly resolves the evolution of Cr−Se and Nb−Se bond distances, coordination polyhedra, and connectivity, revealing a fully reversible semimetal−semiconductor−semimetal transition driven by gradual yet cooperative bond rearrangements within a preserved crystallographic symmetry. In contrast to chemical substitution, which irreversibly alters composition and introduces disorder, pressure acts as a clean, continuous control parameter that reshapes the bonding landscape without disrupting structural symmetry. These results establish CrNbSe 5 as a model system for electronically driven phase switching via tunable chemical bonding, highlighting iso-symmetric bond reorganization as a powerful design principle for pressure-controlled electronic and spintronic functionalities.

Compression

Dynamics and Formation of Antiferromagnetic Textures in MnBi 2 Te 4 Single Crystal

We report coherent X-ray imaging of antiferromagnetic (AFM) domains and domain walls in MnBi 2 Te 4 , an intrinsic AFM topological insulator. This technique enables direct visualization of domain morphology without reconstruction algorithms, allowing us to resolve antiphase domain walls as distinct dark lines arising from the A-type AFM structure. The wall width is determined to be 550(30) nm, in good agreement with earlier magnetic force microscopy results. The temperature dependence of the AFM order parameter extracted from our images closely follows previous neutron scattering data. Remarkably, however, we find a pronounced hysteresis in the evolution of domains and domain walls: upon cooling, dynamic reorganizations occur within a narrow ∼1 K interval below 𝑇 𝑁 , whereas upon warming, the domain configuration remains largely unchanged until AFM order disappears. These findings reveal a complex energy landscape in MnBi 2 Te 4 , governed by the interplay of exchange, anisotropy, and domain-wall energies, and underscore the critical role of AFM domain-wall dynamics in shaping its physical properties. These sharply defined and hysteretically evolving walls may provide a controllable AFM texture in MnBi 2 Te 4 , hinting at potential use in low-power spintronic devices based on domain-wall dynamics.

36 MATERIALS SCIENCE

AIRSAR Data for Geological and Geomorphological Mapping in the Great Sandy Desert and Pilbara Regions of Western Australia

Enhancements of AIRSAR data have demonstrated the benefits of synthetic aperture radar (SAR) for revealing an additional and mich higher level of information about the composition of the terrain than enhancements f either SPOT-PAN or Landsat TM data. With appropriate image processing techniques, surface and near surface geological structures, hydrological systems (both current and ancient) and landform features, have been evidenced in a diverse range of landscapes. In the Great Sandy Desert region where spectral variability is minimal, radar's sensitivity to the micromorphology of sparse exposures of subcrop and lag gravels has provided a new insight into the region's geological framework, its landforms, and their evolution. In the Pilbara region, advanced processing of AIRSAR data to unmix the backscatter between and within the three frequencies of data has highlighted subsurface extensions of greenstone lithologies below sand cover and morphological evidence of past flow conditions under former climate regimes. On the basis of these observations, it is recommend that radar remote sensing technology involving the use of high resolution, polarimetric data be seriously considered as a viable tool for exploration in erosional and depositional environments located within Australia's mineral and oil-prospective provinces.

Tapley, Ian J.

Artificial intelligence-driven approaches for materials design and discovery

Materials design is an important component of modern science and technology, yet traditional approaches rely heavily on trial and error and can be inefficient. Computational techniques, enhanced by modern artificial intelligence, have reshaped the landscape of designing new materials. Among these approaches, inverse design has shown great promise in designing materials that meet specific property requirements. Here, in this Review, we present key computational advances in materials design over the past few decades. We follow the evolution of relevant materials design techniques, from high-throughput forward machine learning methods and evolutionary algorithms, to advanced artificial intelligence strategies such as reinforcement learning and deep generative models. We highlight the paradigm shift from conventional screening approaches to inverse generation driven by deep generative models. Finally, we discuss current challenges and future perspectives of materials inverse design. This Review may serve as a brief guide to the approaches, progress and outlook of designing future functional materials with technological relevance.

computational methods

Star & Planet Formation Studies and Opportunities with SOFIA

Star formation, the most fundamental process in the universe, is linked to planet formation and thus to the origin and evolution of life. We have a general outline of how planets and stars form, yet unraveling the details of the physics and chemistry continues to challenge us. The infrared and submillimeter part of the spectrum hold the most promise for studying the beginnings of star formation. The observational landscape recently shaped by Spitzer, Herschel and ALMA, continues to challenge our current theories. SOFIA, the Stratospheric Observatory for Infrared Astronomy, equipped with state-of-the-art infrared instrumentation to a vantage point at 45,000 feet (13.7 kilometers) flight altitude that is above 99.9 percent of the Earth's water vapor, enables observations in the infrared through terahertz frequencies not possible from the ground. SOFIA is a community observatory, about to start its sixth annual observing cycle. My talk will focus on recent results in advancing star and planet formation processes using SOFIAʼs imaging and polarimetric capabilities, and the upcoming science enabled by the 3rd generation instrument High-Resolution Mid-Infrared Spectrometer (HIRMES) to be commissioned in 2019. I will show how mid-infrared imaging is used to test massive star formation theories, how far-infrared polarimetry on sub-parsec scales is directly testing the role of magnetic fields in molecular clouds, and how velocity-resolved high-resolution spectroscopy will push forward our understanding of proto-planetary disk science. I will also summarize upcoming opportunities with the SOFIA observatory. For the latest news about your flying observatory, see https://sofia.usra.edu/.

Star formation

Ohio River Basin Water Resources: Monitoring Flash Drought Potential and Quantifying the Hydrologic Impacts in the Ohio River Basin

Flash drought conditions emerge in a matter of weeks following persistent weather anomalies, such as high temperatures or large vapor pressure deficits, that drive increased evaporative demand. Vegetation response rapidly depletes soil moisture, threatening surface water supplies, triggering significant crop loss, and increasing wildfire risk. Drought indices sensitive to flash drought are currently not included in drought forecast models in the Ohio River Basin (ORB). The team assessed and compared drought indices, gauge-based data, and satellite measurements over the course of the September 2019 flash drought event in the Ohio River Basin to investigate environmental fingerprints throughout flash drought evolution. Potential leading flash drought indicators were compared to the Standardized Precipitation Index (SPI) to aid the National Weather Service (NWS) Ohio River Forecast Center and Kentucky Climate Center in producing early warning flash drought forecasts. These drought indices included Evaporative Demand Drought Index (EDDI), Standardized Precipitation Evapotranspiration Index (SPEI), and Landscape Evaporative Response Index (LERI) (derived from Terra Moderate Resolution Imaging Spectroradiometer (MODIS)). Drought index behavior inherently varies based on parameters incorporated - EDDI measures evaporative demand through potential evapotranspiration, and demonstrates more variations due to sensitivity to seasonal changes in evaporative demand throughout the 2010-2019 study period. Conversely, LERI measures evaporative response through actual evapotranspiration, representing different environmental changes. Soil moisture response was evaluated using Soil Moisture Active Passive (SMAP) L-band radiometer data and Kentucky Mesonet gauge-based measurements. This analysis enables climatologists and weather forecasters to keep decision-makers and stakeholders better informed about drought risks, and to implement the appropriate actions for preparation of drought onset.

Adelaide Schmid

Ohio River Basin Water Resources: Monitoring Flash Drought Potential and Quantifying the Hydrologic Impacts in the Ohio River Basin Utilizing NASA Earth Observations

Flash drought conditions emerge in a matter of weeks following persistent weather anomalies, such as high temperatures or large vapor pressure deficits, that drive increased evaporative demand. Vegetation response rapidly depletes soil moisture, threatening surface water supplies, triggering significant crop loss, and increasing wildfire risk. Drought indices sensitive to flash drought are currently not included in drought forecast models in the Ohio River Basin (ORB). The team assessed and compared drought indices, gauge-based data, and satellite measurements over the course of the September 2019 flash drought event in the Ohio River Basin to investigate environmental fingerprints throughout flash drought evolution. Potential leading flash drought indicators were compared to the Standardized Precipitation Index (SPI) to aid the National Weather Service (NWS) Ohio River Forecast Center and Kentucky Climate Center in producing early warning flash drought forecasts. These drought indices included Evaporative Demand Drought Index (EDDI), Standardized Precipitation Evapotranspiration Index (SPEI), and Landscape Evaporative Response Index (LERI) (derived from Terra Moderate Resolution Imaging Spectroradiometer (MODIS)). Drought index behavior inherently varies based on parameters incorporated -EDDI measures evaporative demand through potential evapotranspiration, and and demonstrates more variations due to sensitivity to seasonal changes in evaporative demand throughout the 2010-2019 study period. Conversely, LERI measures evaporative response through actual evapotranspiration, representing different environmental changes. Soil moisture response was evaluated using Soil Moisture Active Passive (SMAP) L-band radiometer data and Kentucky Mesonet gauge-based measurements. This analysis enables climatologists and weather forecasters to keep decision-makers and stakeholders better informed about drought risks to implement the appropriate actions for preparation of drought onset.

DEVELOP Project Summary

A Chemoselective and Stereodivergent Platform of Heme‐Nitrene Transferases to Access Chiral Aryl‐β‐Amino Esters and An Investigation of the Sequence‐Activity Landscape

Engineered biocatalysts can utilize nitrene precursors to access enantioenriched amination products, yet they have not been applied to produce valuable, enantiomerically enriched noncanonical β-amino esters. Current approaches to synthesizing β-amino acids rely on pre-oxidized precursors and multistep synthetic approaches involving various protecting groups. We engineered a platform of heme enzymes for stereoselective C–H bond amination of readily available carboxylic ester derivatives to install primary amines. A directed evolution campaign coupled with sequencing of over 1000 variants enabled us to develop engineered variants that use either O-pivaloylhydroxylamine triflic acid (PONT) or hydroxylamine hydrochloride (H 2 NOH∙HCl) as aminating reagents. An analysis of the resulting sequence–activity dataset revealed additional improvements that could be made to the final variant, highlighting the utility of sequencing data to guide future steps in directed evolution campaigns. Furthermore, the evolved nitrene transferases expand the scope of accessible chiral β-amino acid building blocks for peptidomimetic applications and provide new starting points for the design and synthesis of enantioenriched β-amino acid motifs.

amino ester building blocks