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DOE OSTI2025

RWRtoolkit: multi-omic network analysis using random walks on multiplex networks in any species

Abstract We introduce RWRtoolkit, a multiplex generation, exploration, and statistical package built for R and command-line users. RWRtoolkit enables the efficient exploration of large and highly complex biological networks generated from custom experimental data and/or from publicly available datasets, and is species agnostic. A range of functions can be used to find topological distances between biological entities, determine relationships within sets of interest, search for topological context around sets of interest, and statistically evaluate the strength of relationships within and between sets. The command-line interface is designed for parallelization on high-performance cluster systems, which enables high-throughput analysis such as permutation testing. Several tools in the package have also been made available for use in reproducible workflows via the KBase web application.

Kainer, David (ORCID:0000000172714676)↗
DOE OSTI2020

Range-based memory system

A mechanism is provided for efficient coherence state modification of cached data stored in a range of addresses in a coherent data processing system in which data coherency is maintained across multiple caches. A tag search structure is maintained that identifies address tags and coherence states of cached data indexed by address tags. In response to a request from a device internal to or external from the coherence network, the tag search structure is searched to identify address tags of cached data for which the coherence state is to be modified and requests are issued in the data processing system to modify a coherence state of cached lines with the identified address tags. The request from the external device may specify a range of addresses for which a coherence state change is sought. The tag search structure may be implemented as search tree, for example.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2022

SDSS-IV MaNGA: a catalogue of spectroscopically detected strong galaxy–galaxy lens candidates

ABSTRACT We spectroscopically detected candidate emission-lines of 8 likely, 17 probable, and 69 possible strong galaxy–galaxy gravitational lens candidates found within the spectra of $\approx 10\, 000$ galaxy targets contained within the completed Mapping of Nearby Galaxies at Apache Point Observatory survey. This search is based upon the methodology of the Spectroscopic Identification of Lensing Objects project, which extends the spectroscopic detection methods of the BOSS Emission-Line Lensing Survey and the Sloan Lens ACS Survey. We scanned the co-added residuals that we constructed from stacks of foreground subtracted row-stacked-spectra so a sigma-clipping method can be used to reject cosmic rays and other forms of transients that impact only a small fraction of the combined exposures. We also constructed narrow-band images from the signal to noise of the co-added residuals to observe signs of lensed source images. We also use several methods to compute the probable strong lensing regime for each candidate lens to determine which candidate background galaxies may reside sufficiently near the galaxy centre for strong lensing to occur. We present the spectroscopic redshifts within a value-added catalogue (VAC) for data release 17 (DR17) of SDSS-IV. We also present the lens candidates, spectroscopic data, and narrow-band images within a VAC for DR17. High resolution follow-up imaging of these lens candidates are expected to yield a sample of confirmed grade-A lenses with sufficient angular size to probe possible discrepancies between the mass derived from a best-fitting lens model, and the dynamical mass derived from the observed stellar velocities.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2025

Detection of Thermal Emission at Millimeter Wavelengths from Low-Earth Orbit Satellites

The detection of satellite thermal emission at millimeter wavelengths is presented using data from the 3rd-Generation receiver on the South Pole Telescope (SPT-3G). This represents the first reported detection of thermal emission from artificial satellites at millimeter wavelengths. Satellite thermal emission is shown to be detectable at high signal-to-noise on timescales as short as a few tens of milliseconds. An algorithm for downloading orbital information and tracking known satellites given observer constraints and time-ordered observatory pointing is described. Consequences for cosmological surveys and short-duration transient searches are discussed, revealing that the integrated thermal emission from all large satellites does not contribute significantly to the SPT-3G survey intensity map. Measured satellite positions are found to be discrepant from their two-line element (TLE) derived ephemerides up to several arcminutes which may present a difficulty in cross-checking or masking satellites from short-duration transient searches.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2021

AGNs on the Move: A Search for Off-nuclear AGNs from Recoiling Supermassive Black Holes and Ongoing Galaxy Mergers with the Zwicky Transient Facility

A supermassive black hole (SMBH) ejected from the potential well of its host galaxy via gravitational wave recoil carries important information about the mass ratio and spin alignment of the pre-merger SMBH binary. Such a recoiling SMBH may be detectable as an active galactic nucleus (AGN) broad-line region offset by up to 10 kpc from a disturbed host galaxy. We describe a novel methodology using forward modeling with The Tractor to search for such offset AGNs in a sample of 5493 optically variable AGNs detected with the Zwicky Transient Facility (ZTF). We present the discovery of nine AGNs that may be spatially offset from their host galaxies and are candidates for recoiling SMBHs. Five of these offset AGNs exhibit double-peaked broad Balmer lines, which may have arisen from unobscured accretion disk emission, and four show radio emission indicative of a relativistic jet. The fraction of double-peaked emitters in our spatially offset AGN sample is significantly larger than the 16% double-peaked emitter fraction observed for ZTF AGNs overall. In our sample of variable AGNs we also identified 52 merging galaxies, including a new spectroscopically confirmed dual AGN. Finally, we detected the dramatic rebrightening of SDSS 1133, a previously discovered variable object and recoiling SMBH candidate, in ZTF. The flare was accompanied by the reemergence of strong P Cygni line features, indicating that SDSS 1133 may be an outbursting luminous blue variable star.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2026

Selecting Critical Scenarios of DER Adoption in Distribution Grids Using Bayesian Optimization

We develop a new methodology to select scenarios of DER adoption most critical for distribution grids. Anticipating risks of future voltage and line flow violations due to additional PV adopters is central for utility investment planning but continues to rely on deterministic or ad hoc scenario selection. We propose a highly efficient search framework based on multi-objective Bayesian Optimization. We treat underlying grid stress metrics as computationally expensive black-box functions, approximated via Gaussian Process surrogates and design an acquisition function based on probability of scenarios being Pareto-critical across a collection of line- and bus-based violation objectives. Our approach provides a statistical guarantee and offers an order of magnitude speed-up relative to a conservative exhaustive search. Case studies on realistic feeders with 200-400 buses demonstrate the effectiveness and accuracy of our approach.

Mulkin, Olivier↗
DOE OSTI2022

Cosmology and signals of light pseudo-Dirac dark matter

In this paper, we analyze the cosmological evolution, allowed parameter space, and observational prospects for a dark sector consisting of thermally produced pseudo-Dirac fermions with a small mass splitting, coupled to the Standard Model through a dark photon. This scenario is particularly notable in the context of sub-GeV dark matter, where the mass-off-diagonal leading interaction limits applicability of both CMB energy injection constraints and standard direct detection searches. We present the first general study of the thermal history of pseudo-Dirac DM with splittings from 100 eV to MeV, focusing on the depletion of the heavier “excited” state abundance via scatterings and decays, and on the distinctive signals arising from its small surviving abundance. We analyze CMB energy injection bounds on both DM annihilation and decay, accelerator-based probes, and new line-like direct-detection signals from the excited DM down-scattering on either nuclei or electrons, as well as future search prospects in each channel. We also comment on the relevance of this signal to the few-keV Xenon1T electron excess and on possible diurnal modulation of this signal, and introduce a signal-strength parametrization to facilitate the comparison of future experimental results to theoretical expectations.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2026

Identifying Anomalous DESI Galaxy Spectra with a Variational Autoencoder

The tens of millions of spectra being captured by the Dark Energy Spectroscopic Instrument (DESI) provide tremendous discovery potential. In this work we show how Machine Learning, in particular Variational Autoencoders (VAE), can detect anomalies in a sample of approximately 200,000 DESI spectra comprising galaxies, quasars and stars. We demonstrate that the VAE can compress the dimensionality of a spectrum by a factor of 100, while still retaining enough information to accurately reconstruct spectral features. We then detect anomalous spectra as those with high reconstruction error and those which are isolated in the VAE latent representation. The anomalies identified fall into two categories: spectra with artefacts and spectra with unique physical features. Awareness of the former can help to improve the DESI spectroscopic pipeline; whilst the latter can lead to the identification of new and unusual objects. To further curate the list of outliers, we use the Astronomaly package which employs Active Learning to provide personalised outlier recommendations for visual inspection. In this work we also explore the VAE latent space, finding that different object classes and subclasses are separated despite being unlabelled. We demonstrate the interpretability of this latent space by identifying tracks within it that correspond to various spectral characteristics. For example, we find tracks that correspond to increasing star formation and increase in broad emission lines along the Balmer series. In upcoming work we hope to apply the methods presented here to search for both systematics and astrophysically interesting objects in much larger datasets of DESI spectra.

Nicolaou, C. [University Coll. London] (ORCID:0000↗
DOE OSTI2024

Optimization and Multimachine Learning Algorithms to Predict Nanometal Surface Area Transfer Parameters for Gold and Silver Nanoparticles

Interactions between gold metallic nanoparticles and molecular dyes have been well described by the nanometal surface energy transfer (NSET) mechanism. However, the expansion and testing of this model for nanoparticles of different metal composition is needed to develop a greater variety of nanosensors for medical and commercial applications. In this study, the NSET formula was slightly modified in the size-dependent dampening constant and skin depth terms to allow for modeling of different metals as well as testing the quenching effects created by variously sized gold, silver, copper, and platinum nanoparticles. Overall, the metal nanoparticles followed more closely the NSET prediction than for Förster resonance energy transfer, though scattering effects began to occur at 20 nm in the nanoparticle diameter. To further improve the NSET theoretical equation, an attempt was made to set a best-fit line of the NSET theoretical equation curve onto the Au and Ag data points. An exhaustive grid search optimizer was applied in the ranges for two variables, 0.1≤C≤2.0 and 0≤α≤4, representing the metal dampening constant and the orientation of donor to the metal surface, respectively. Three different grid searches, starting from coarse (entire range) to finer (narrower range), resulted in more than one million total calculations with values C=2.0 and α=0.0736. The results improved the calculation, but further analysis needed to be conducted in order to find any additional missing physics. With that motivation, two artificial intelligence/machine learning (AI/ML) algorithms, multilayer perception and least absolute shrinkage and selection operator regression, gave a correlation coefficient, R2, greater than 0.97, indicating that the small dataset was not overfitting and was method-independent. This analysis indicates that an investigation is warranted to focus on deeper physics informed machine learning for the NSET equations.

Demers, Steven M. E. (ORCID:0000000192213246)↗
DOE OSTI2026

A New Record Census of Dwarf AGN and a Bimodal $M_{\rm BH}$-$M_{\star}$ Scaling Relation with DESI DR1

Using the first spectroscopic data release from the Dark Energy Spectroscopic Instrument (DESI DR1), we search for AGN signatures in 1,678,787 low-redshift ($0.001 \le z \le 0.45$) line-emitting galaxies. Based on the [NII]-BPT emission-line ratio diagnostic, we identify AGN in 314,245/1,211,573 (25.9%) high-mass ($\log (M_{\star}/M_{\odot}) > 9.5$) and 9648/467,214 (2.1%) dwarf ($\log (M_{\star}/M_{\odot}) \le 9.5$) galaxies. Among these AGN, 17,949 are broad-line candidates (BL-AGN) with broad H$α$ emission, enabling black hole (BH) mass estimates using single-epoch virial methods. We find that the AGN fraction in line-emitting galaxies increases monotonically with stellar mass, rising from $\sim$1.4% at the low-mass end to $\sim$93.3% at the high-mass end. Using the large BL-AGN sample, we extend the $M_{\rm BH} - M_{\star}$ scaling relation down to $\log (M_{\star}/M_{\odot}) \approx 7.8$ and $\log (M_{\rm BH}/M_{\odot}) \approx 4.4$. In the context of high-redshift overmassive BHs, our results suggest that galaxies and their central BHs may follow two distinct evolutionary pathways across cosmic time. With this paper, we release the EmFit value-added catalog, containing emission-line flux and width measurements for $\sim$7.4 million galaxies, the largest catalog with emission-line decomposition into narrow, broad, and outflow components to date. This work significantly expands upon the early DESI results and provides a statistical sample for probing the galaxy$-$BH connection in the low-mass galaxy regime.

Pucha, Ragadeepika [Utah U.; Arizona U., Astron. D↗
DOE OSTI2022

Using Splunk® Enterprise Search Commands for Advanced Analysis of Ivanti Connect Secure© Logs

Analyzing the logs of even the smallest Information Technology (IT) system can be a challenge considering they can generate millions of lines of log data in a very short time. Splunk® Enterprise is an industry leading tool that allows analysis of log data, which can enhance troubleshooting capabilities, improve system performance, and improve the security posture of an IT system. Ivanti Connect Secure© (ICS) is a market-leading platform powered by the Ivanti Secure Socket Layer Virtual Private Network (SSL VPN) appliance, providing an architecture for secure access to and protection of network resources. This paper describes an approach for using Splunk Enterprise search capabilities to perform advanced data analysis of ICS logs.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2021

Measurement of the ionization response of amorphous selenium with 122 keV γ rays

In this work, we performed a measurement of the ionization response of 200 μm-thick amorphous selenium (aSe) layers under drift electric fields of up to 50 V/μm. The aSe target was exposed to ionizing radiation from a 57 Co radioactive source and the ionization pulses were recorded with high resolution. Using the spectral line from the photoabsorption of 122 keV γ rays, we measured the charge yield in aSe and the line width as a function of drift electric field. From a detailed microphysics simulation of charge generation and recombination in aSe, we conclude that the strong dependence of recombination on the ionization track density provides the dominant contribution to the energy resolution in aSe. These results provide valuable input to estimate the sensitivity of a proposed next-generation search for the neutrinoless ββ decay of 82 Se that aims to employ imaging sensors with an active layer of aSe. We estimate the RMS line width of the integrated ionization signal from neutrinoless ββ decay events (of deposited energy 3 MeV) to be 2.0% for a drift field of 50 V/μm. The energy resolution can be improved to 1% by correcting for the charge yield as a function of ionization density along the imaged electron tracks.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2021

A Sample of Massive Black Holes in Dwarf Galaxies Detected via [Fe x] Coronal Line Emission: Active Galactic Nuclei and/or Tidal Disruption Events

The massive black hole (BH) population in dwarf galaxies ( M BH ≲ 10 5 M ⊙ ) can provide strong constraints on the origin of BH seeds. However, traditional optical searches for active galactic nuclei (AGNs) only reliably detect high-accretion, relatively high-mass BHs in dwarf galaxies with low amounts of star formation, leaving a large portion of the overall BH population in dwarf galaxies relatively unexplored. Here, we present a sample of 81 dwarf galaxies ( M $\star$ ≤ 3 × 10 9 M ⊙ ) with detectable [Fe x]λ6374 coronal line emission indicative of accretion onto massive BHs, only two of which were previously identified as optical AGNs. Here, we analyze optical spectroscopy from the Sloan Digital Sky Survey and find [Fe x]λ6374 luminosities in the range L [Fe x] ≈ 10 36 –10 39 erg s –1 , with a median value of 1.6 × 10 38 erg s –1 . The [Fe x]λ6374 luminosities are generally much too high to be produced by stellar sources, including luminous Type IIn supernovae (SNe). Moreover, based on known SNe rates, we expect at most eight Type IIn SNe in our sample. That said, the [Fe x]λ6374 luminosities are consistent with accretion onto massive BHs from AGNs or tidal disruption events (TDEs). We find additional indicators of BH accretion in some cases using other emission line diagnostics, optical variability, and X-ray and radio emission (or some combination of these). However, many of the galaxies in our sample only have evidence for a massive BH based on their [Fe x]λ6374 luminosities. This work highlights the power of coronal line emission to find BHs in dwarf galaxies missed by other selection techniques and to probe the BH population in bluer, lower-mass dwarf galaxies.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2024

The DarkNESS mission: probing dark matter with a Skipper-CCD satellite observatory

The invention of Skipper-CCDs with sub-electron noise has paved the way for groundbreaking low-threshold dark matter (DM) experiments, such as SENSEI and DAMIC. Conventionally, these experiments are deployed underground to mitigate cosmogenic backgrounds; however, some DM signatures are inaccessible to underground experiments due to attenuation in the Earth’s atmosphere and crust. The DarkNESS mission will deploy an array of Skipper-CCDs on a 6U CubeSat in Low Earth Orbit (LEO) to search for electron recoils from strongly-interacting sub-GeV DM as well as X-ray line signatures from sterile neutrino decay. Using a series of observations from LEO, the DarkNESS mission will set competitive upper limits on the DM-electron scattering cross section and help resolve the experimental conundrum associated with the purported observation of a 3.5 keV X-ray line, potentially produced from sterile neutrino decay. This work will describe the DarkNESS instrument, the technical challenges in operating Skipper-CCDs in the space environment, the scientific objectives of the DarkNESS mission, and the DM parameter space that DarkNESS will probe.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

Hubble Space Telescope UV and Hα Measurements of the Accretion Excess Emission from the Young Giant Planet PDS 70 b

Recent discoveries of young exoplanets within their natal disks offer exciting opportunities to study ongoing planet formation. In particular, a planet’s mass accretion rate can be constrained by observing the accretion-induced excess emission. So far, planetary accretion is only probed by the Hα line, which is then converted to a total accretion luminosity using correlations derived for stars. However, the majority of the accretion luminosity is expected to emerge from hydrogen continuum emission, and is best measured in the ultraviolet (UV). In this paper, we present HST/WFC3/UVIS F336W (UV) and F656N (Hα) high-contrast imaging observations of PDS 70. Applying a suite of novel observational techniques, we detect the planet PDS 70 b with signal-to-noise ratios of 5.3 and 7.8 in the F336W and F656N bands, respectively. This is the first time that an exoplanet has been directly imaged in the UV. Our observed Hα flux of PDS 70 b is higher by 3.5σ than the most recent published result. However, the light curve retrieved from our observations does not support greater than 30% variability in the planet’s Hα emission in six epochs over a five month timescale. We estimate a mass accretion rate of 1.4±0.2×10{sup −8}M{sub Jup} yr{sup −1}. Hα accounts for 36% of the total accretion luminosity. Such a high proportion of energy released in line emission suggests efficient production of Hα emission in planetary accretion, and motivates using the Hα band for searches of accreting planets. These results demonstrate HST/WFC3/UVIS’s excellent high-contrast imaging performance and highlight its potential for planet formation studies.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2020

Galaxy and Mass Assembly: A Comparison between Galaxy–Galaxy Lens Searches in KiDS/GAMA

Strong gravitational lenses are a rare and instructive type of astronomical object. Identification has long relied on serendipity, but different strategies—such as mixed spectroscopy of multiple galaxies along the line of sight, machine-learning algorithms, and citizen science—have been employed to identify these objects as new imaging surveys become available. We report on the comparison between spectroscopic, machine-learning, and citizen-science identification of galaxy–galaxy lens candidates from independently constructed lens catalogs in the common survey area of the equatorial fields of the Galaxy and Mass Assembly survey. In these, we have the opportunity to compare high completeness spectroscopic identifications against high-fidelity imaging from the Kilo Degree Survey used for both machine-learning and citizen-science lens searches. We find that the three methods—spectroscopy, machine learning, and citizen science—identify 47, 47, and 13 candidates, respectively, in the 180 square degrees surveyed. These identifications barely overlap, with only two identified by both citizen science and machine learning. We have traced this discrepancy to inherent differences in the selection functions of each of the three methods, either within their parent samples (i.e., citizen science focuses on low redshift) or inherent to the method (i.e., machine learning is limited by its training sample and prefers well-separated features, while spectroscopy requires sufficient flux from lensed features to lie within the fiber). These differences manifest as separate samples in estimated Einstein radius, lens stellar mass, and lens redshift. The combined sample implies a lens candidate sky density of ∼0.59 deg{sup −2} and can inform the construction of a training set spanning a wider mass–redshift space. A combined approach and refinement of automated searches would result in a more complete sample of galaxy–galaxy lens candidates for future surveys.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

Oracle-Preserving Latent Flows

A fundamental task in data science is the discovery, description, and identification of any symmetries present in the data. We developed a deep learning methodology for the simultaneous discovery of multiple non-trivial continuous symmetries across an entire labeled dataset. The symmetry transformations and the corresponding generators are modeled with fully connected neural networks trained with a specially constructed loss function, ensuring the desired symmetry properties. The two new elements in this work are the use of a reduced-dimensionality latent space and the generalization to invariant transformations with respect to high-dimensional oracles. The method is demonstrated with several examples on the MNIST digit dataset, where the oracle is provided by the 10-dimensional vector of logits of a trained classifier. We find classes of symmetries that transform each image from the dataset into new synthetic images while conserving the values of the logits. We illustrate these transformations as lines of equal probability (“flows”) in the reduced latent space. These results show that symmetries in the data can be successfully searched for and identified as interpretable non-trivial transformations in the equivalent latent space.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2020

Search for TiO and Optical Nightside Emission from the Exoplanet WASP-33b

With a temperature akin to an M dwarf, WASP-33b is among the hottest Jupiters known, making it an ideal target for high-resolution optical spectroscopy. By analyzing both transmission and emission spectra, we aim to substantiate previous reports of atmospheric TiO and a thermal inversion within the planet’s atmosphere. We observed two transits and six arcs of the phase curve with the Echelle SpectroPolarimetric Device for the Observation of Stars (ESPaDOnS) on the Canada–France–Hawaii Telescope and High Resolution Echelle Spectrometer (HIRES) on the Keck telescope, which provide high spectral resolution and ample wavelength coverage. We employ the Doppler cross-correlation technique to search for the molecular signatures of TiO and H{sub 2}O in these spectra, using models based on the TiO line list of Plez. Though we cannot exclude line-list-dependent effects, our data do not corroborate previous indications of a thermal inversion. Instead we place a 3σ upper limit of 10{sup −9} on the volume mixing ratio of TiO for the T–P profile we consider. While we are unable to constrain the volume mixing ratio of water, our strongest constraint on TiO comes from dayside emission spectra. This apparent absence of a stratosphere sits in stark contrast to previous observations of WASP-33b as well as theoretical predictions for the atmospheres of highly irradiated planets. The discrepancy could be due to variances between line lists, and we stress that detection limits are only as good as the line list employed, and are only valid for the specific T–P profile considered due to the strong degeneracy between lapse rate (dT/dlogP) and molecular abundance.

79 ASTRONOMY AND ASTROPHYSICS↗