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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 109 records · Page 6
All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

Optimization of nutrient utilization efficiency and productivity for algal cultures under light and dark cycles using genome-scale model process control

Abstract Algal cultivations are strongly influenced by light and dark cycles. In this study, genome-scale metabolic models were applied to optimize nutrient supply during alternating light and dark cycles of Chlorella vulgaris . This approach lowered the glucose requirement by 75% and nitrate requirement by 23%, respectively, while maintaining high final biomass densities that were more than 80% of glucose-fed heterotrophic culture. Furthermore, by strictly controlling glucose feeding during the alternating cycles based on model-input, yields of biomass, lutein, and fatty acids per gram of glucose were more than threefold higher with cycling compared to heterotrophic cultivation. Next, the model was incorporated into open-loop and closed-loop control systems and compared with traditional fed-batch systems. Closed-loop systems which incorporated a feed-optimizing algorithm increased biomass yield on glucose more than twofold compared to standard fed-batch cultures for cycling cultures. Finally, the performance was compared to conventional proportional-integral-derivative (PID) controllers. Both simulation and experimental results exhibited superior performance for genome-scale model process control (GMPC) compared to traditional PID systems, reducing the overall measured value and setpoint error by 80% over 8 h. Overall, this approach provides researchers with the capability to enhance nutrient utilization and productivity of cell factories systematically by combining genome-scale models and controllers into an integrated platform with superior performance to conventional fed-batch and PID methodologies.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

Leveraging public AI tools to explore systems biology resources in mathematical modeling

Predictive mathematical modeling is an essential part of systems biology and is interconnected with information management. Systems biology information is often stored in specialized formats to facilitate data storage and analysis. These formats are not designed for easy human readability and thus require specialized software to visualize and interpret results. Therefore, comprehending modeling and underlying networks and pathways is contingent on mastering systems biology tools, which is particularly challenging for users with no or little background in data science or system biology. To address this challenge, we investigated the usage of public Artificial Intelligence (AI) tools in exploring systems biology resources in mathematical modeling. We tested public AI’s understanding of mathematics in models, related systems biology data, and the complexity of model structures. Our approach can enhance the accessibility of systems biology for non-system biologists and help them understand systems biology without a deep learning curve.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Kibble-Zurek mechanism for nonequilibrium phase transitions in driven systems with quenched disorder

Abstract We show that the Kibble-Zurek mechanism applies to nonequilibrium phase transitions found in driven assemblies of superconducting vortices and colloids moving over quenched disorder where a transition occurs from a plastic disordered flowing state to a moving anisotropic crystal. We measure the density of topological defects as a function of quench rate through the nonequilibrium phase transition, and find that on the ordered side of the transition, the topological defect density ρ d scales as a power law, $${\rho }_{{{{{{{{\rm{d}}}}}}}}}\propto 1/{t}_{{{{{{{{\rm{q}}}}}}}}}^{\beta }$$ ρ d ∝ 1 / t q β , where t q is the quench time duration, consistent with the Kibble-Zurek mechanism. We show that scaling with the same exponent holds for varied strengths of quenched disorder and that the exponents fall in the directed percolation universality class. Our results suggest that the Kibble-Zurek mechanism can be applied to the broader class of systems that exhibit absorbing phase transitions.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2021

A framework for data-driven solution and parameter estimation of PDEs using conditional generative adversarial networks

We employ and adapt the image-to-image translation concept based on conditional generative adversarial networks (cGAN) for learning a forward and an inverse solution operator of partial differential equations (PDEs). We focus on steady-state solutions of coupled hydromechanical processes in heterogeneous porous media and present the parameterization of the spatially heterogeneous coefficients, which is exceedingly difficult using standard reduced-order modeling techniques. We show that our framework provides a speed-up of at least 2,000 times compared to a finite-element solver and achieves a relative root-mean-square error (r.m.s.e.) of less than 2% for forward modeling. For inverse modeling, the framework estimates the heterogeneous coefficients, given an input of pressure and/or displacement fields, with a relative r.m.s.e. of less than 7%, even for cases where the input data are incomplete and contaminated by noise. The framework also provides a speed-up of 120,000 times compared to a Gaussian prior-based inverse modeling approach while also delivering more accurate results.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2019

The nonconforming Virtual Element Method for eigenvalue problems

In this work, we analyse the nonconforming Virtual Element Method (VEM) for the approximation of elliptic eigenvalue problems. The nonconforming VEM allows to treat in the same formulation the two- and three-dimensional case. We present two possible formulations of the discrete problem, derived respectively by the nonstabilized and stabilized approximation of the $L^2$-inner product, and we study the convergence properties of the corresponding discrete eigenvalue problem. The proposed schemes provide a correct approximation of the spectrum, in particular we prove optimal-order error estimates for the eigenfunctions and the usual double order of convergence of the eigenvalues. Finally we show a large set of numerical tests supporting the theoretical results, including a comparison with the conforming Virtual Element choice.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2019

Practical rare event sampling for extreme mesoscale weather

Extreme mesoscale weather, including tropical cyclones, squall lines, and floods, can be enormously damaging and yet challenging to simulate; hence, there is a pressing need for more efficient simulation strategies. Here, we present a new rare event sampling algorithm called quantile diffusion Monte Carlo (quantile DMC). Quantile DMC is a simple-to-use algorithm that can sample extreme tail behavior for a wide class of processes. We demonstrate the advantages of quantile DMC compared to other sampling methods and discuss practical aspects of implementing quantile DMC. To test the feasibility of quantile DMC for extreme mesoscale weather, we sample extremely intense realizations of two historical tropical cyclones, 2010 Hurricane Earl and 2015 Hurricane Joaquin. Our results demonstrate quantile DMC’s potential to provide low-variance extreme weather statistics while highlighting the work that is necessary for quantile DMC to attain greater efficiency in future applications.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2023

Dynamical commensuration effect in a two-dimensional Yukawa solid modulated by periodic substrates

Transverse depinning dynamics of a periodic-square-substrate modulated two-dimensional dusty plasma solid driven by a constant force in the longitudinal direction are investigated using Langevin dynamical simulations. When the commensuration ratio (the number ratio of particles to substrate potential wells) is increased, there is a nonmonotonic variation of the critical transverse depinning force, and the local maxima and minima of the critical transverse depinning force precisely correspond to the dynamical commensurate and incommensurate conditions, respectively. Here, the dynamical commensuration effect is also clearly visible in the stable one-dimensional channel particle trajectories and the highly ordered structure, while both the particle trajectories and the structure are more disordered under the incommensurate conditions. The nonmonotonic variation of the critical transverse depinning force is attributed to the stability of the lattice structure at specific commensuration ratios.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2019

Rejoinder

We would like to thank all of the discussants for their thoughtful and insightful comments. We heartily agree with Willis Jensen’s remark that the collection of views from multiple different perspectives possible with a discussion paper has added greatly to the overall contribution. Roger Hoerl compactly and eloquently summarized our thoughts about the role of statisticians on teams: “to objectively lead a team of subject matter experts through the minefield of problem resolution.” We agree with Benjamin Slade that this leadership role can be achieved either through formally leading the team or by being an active, engaged member of the team with an eye on the overall goals of the team and impacting the structure of the decision-making process. Hoerl also highlights what solutions interdisciplinary teams should be seeking – namely those that are “the best business … or scientific solution[s], rather than the best statistical solutions.” If this is how we define the objective of the team’s problem-solving or decision-making efforts, then establishing ourselves as fully-included team members or even working towards leading the team efforts should become easier.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2020

Where did the tumor start? An inverse solver with sparse localization for tumor growth models

In this work, we present a numerical scheme for solving an inverse problem for parameter estimation in tumor growth models for glioblastomas, a form of aggressive primary brain tumor. The growth model is a reaction–diffusion partial differential equation (PDE) for the tumor concentration. We use a PDE-constrained optimization formulation for the inverse problem. The unknown parameters are the reaction coefficient (proliferation), the diffusion coefficient (infiltration), and the initial condition field for the tumor PDE. Segmentation of magnetic resonance imaging (MRI) scans drive the inverse problem where segmented tumor regions serve as partial observations of the tumor concentration. Like most cases in clinical practice, we use data from a single time snapshot. Moreover, the precise time relative to the initiation of the tumor is unknown, which poses an additional difficulty for inversion. We perform a frozen-coefficient spectral analysis and show that the inverse problem is severely ill-posed. We introduce a biophysically motivated regularization on the structure and magnitude of the tumor initial condition. In particular, we assume that the tumor starts at a few locations (enforced with a sparsity constraint on the initial condition of the tumor) and that the initial condition magnitude in the maximum norm is equal to one. We solve the resulting optimization problem using an inexact quasi-Newton method combined with a compressive sampling algorithm for the sparsity constraint. Our implementation uses PETSc and AccFFT libraries. We conduct numerical experiments on synthetic and clinical images to highlight the improved performance of our solver over a previously existing solver that uses standard two-norm regularization for the calibration parameters. The existing solver is unable to localize the initial condition. Our new solver can localize the initial condition and recover infiltration and proliferation. In clinical datasets (for which the ground truth is unknown), our solver results in qualitatively different solutions compared to the two-norm regularized solver.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2019

Family of potentials with power law kink tails

Here, we provide examples of a large class of one-dimensional higher-order field theories with kink solutions which asymptotically have a power law tail either at one end or at both ends. In particular, we provide examples of a family of potentials which admit a kink as well as a mirror kink solution where all four ends of the two kinks, or only two extreme ends of the two kinks have a power law tail (while the two ends facing each other have an exponential tail). The remaining case includes the situation when the ends facing each other have a power law tail while the two extreme ends of the two kinks have an exponential tail. Further, we show that for a kink with a power law tail at either one end or at both ends, there is no gap between the zero mode and the continuum of the corresponding stability equation. This is in contrast with the kinks with an exponential tail at both ends, in which case there is always a gap between the zero mode and the continuum.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2019

Connections between complex PT-invariant solutions and complex periodic solutions of several nonlinear equations

We point out novel connections between complex PT-invariant solutions of several nonlinear equations such as $\phi$ 4 , $\phi$ 6 sine-Gordon, hyperbolic sine-Gordon, double sine-Gordon, double hyperbolic sine-Gordon, mKdV, etc. We then use these connections to obtain several new complex PT-invariant periodic solutions of some of these equations.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2020

Wide class of logarithmic potentials with power-tower kink tails

We present a wide class of potentials which admit kinks and corresponding mirror kinks with either a power law or an exponential tail at the two extreme ends and a power-tower form of tails at the two neighbouring ends. We analyse kink stability equation in all these cases and show that there is no gap between the zero mode and the beginning of the continuum. Finally, we provide a recipe for obtaining logarithmic potentials with power-tower kink tails and estimate kink–kink interaction strength.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2021

Behavior of solitary waves of coupled nonlinear Schrödinger equations subjected to complex external periodic potentials with odd-$\mathcal{PT}$ symmetry

In this work, we discuss the response of both moving and trapped solitary wave solutions of a two-component nonlinear Schrödinger system in 1 + 1 dimensions to an odd-$\mathcal{PT}$ external periodic complex potential. The dynamical behavior of perturbed solitary waves is explored by conducting numerical simulations of the nonlinear system and using a collective coordinate variational approximation. We present case examples corresponding to choices of parameter values and initial conditions involved therein. The results of the collective coordinate approximation are compared against numerical simulations where we observe qualitatively good agreement between the two. Unlike the case for a single-component solitary wave in a complex periodic $\mathcal{PT}$-symmetric potential, the collective coordinate equations do not have a small oscillation regime, and initially the height of the two components changes in opposite directions often causing instability. We find that the dynamic stability criteria we have used in the one-component case are a good indicator for the onset of dynamic instabilities in the present setup.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2020

Early Career Paths at Los Alamos National Laboratory

We represent a selection of early career staff at LANL with backgrounds in mathematics. There are many possible paths to a position at LANL. The lab has very active graduate research and postdoctoral programs, and it is not uncommon for graduate students to become postdocs, who can then be “converted” to staff. Conversion from being a postdoc is not the only route to a position at LANL, nor is it a guarantee, but most of us did postdocs here before becoming staff. Being a postdoc here also gives you an idea of whether you’d like living in northern New Mexico, a rugged, beautiful, and somewhat remote area. It is important to say here that citizenship is not a requirement for many of the positions at the lab. The lab historically and currently welcomes investigators from all over the world. LANL offers a broad spectrum of mathematical challenges that are largely problem driven. Particularly to those who feel that academic mathematics can be stove-piped, with a focus on deep but not necessarily broad expertise, the LANL environment gives the flexibility to move and grow in many different directions. The lab encourages a team-based approach to problems, which not only enhances the breadth of our approach to solving problems, but also gives team members access to new fields. From the outside (academia), however, it can be difficult to see how fields map between academia and the lab. This is one of the reasons that having interaction with the lab as a graduate student or postdoc can be helpful in understanding if the environment would be a good match for you. An important advantage of working at the lab is our high visibility both in academia, as well as in industry and the government. Because of its mission-driven projects, LANL, and more broadly the Department of Energy Laboratories, help set research directions that are picked up by researchers in academia. For this reason, many lab staff have worked at LANL for a number of years, then have transferred into academia after having set the agenda for their field of expertise. Below, we will share some of our experiences, opinions, and reflections in order to give the reader a feel for our own early career experiences.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2022

Nonlinear dimension reduction for surrogate modeling using gradient information

We introduce a method for the nonlinear dimension reduction of a high-dimensional function $u:{\mathbb{R}}^d\rightarrow{\mathbb{R}}$, $d\gg 1$. Our objective is to identify a nonlinear feature map $g:{\mathbb{R}}^d\rightarrow{\mathbb{R}}^m$, with a prescribed intermediate dimension $m\ll d$, so that $u$ can be well approximated by $f\circ g$ for some profile function $f:{\mathbb{R}}^m\rightarrow{\mathbb{R}}$. We propose to build the feature map by aligning the Jacobian $\nabla g$ with the gradient $\nabla u$, and we theoretically analyze the properties of the resulting $g$. Once $g$ is built, we construct $f$ by solving a gradient-enhanced least squares problem. Our practical algorithm uses a sample $\{{\textbf{x}}^{(i)},u({\textbf{x}}^{(i)}),\nabla u({\textbf{x}}^{(i)})\}_{i=1}^N$ and builds both $g$ and $f$ on adaptive downward-closed polynomial spaces, using cross validation to avoid overfitting. We numerically evaluate the performance of our algorithm across different benchmarks, and explore the impact of the intermediate dimension $m$. We show that building a nonlinear feature map $g$ can permit more accurate approximation of $u$ than a linear $g$, for the same input data set.

97 MATHEMATICS AND COMPUTING↗