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NASA NTRS1989

Life cycles of persistent anomalies. I - Evolution of 500 mb height fields

The life cycles of persistent anomalies of the extratropical Northern Hemisphere wintertime circulation are studied, focusing on the typical characteristics of the 500 mb height anomaly and flow patterns accompanying the development and breakdown of large-scale flow anomalies in the eastern North Atlantic and the northern Soviet Union. Following onset, anomaly centers develop and intensify in sequence downstream from the main center, forming a quasi-stationary wavetrain pattern. From development through decay, corresponding positive and negative patterns have similar evolutions.

Dole, Randall M.↗

DOE OSTI2022

Title Coherent X-ray Studies of Surface Growth and Patterning Processes

X-ray Photon Correlation Spectroscopy (XPCS) is being developed as a tool to study nanoscale dynamics of fluctuations during thin film growth and surface patterning. XPCS examines the evolution of the X-ray scattering speckle pattern in reciprocal space to reveal dynamics information not accessible through any other means. Unlike low-coherence conventional X-ray scattering, which incoherently averages over different regions of a sample, coherent X-ray scattering is sensitive to the detailed structure of a given sample at that moment in time. In thin film growth processes, heterodyning, which occurs due to coherent mixing of two scattered signals, can be used to investigate the relationship between surface growth velocity and defect propagation. And, for polycrystalline thin film growth, the spatial coherence of the X-ray beam can substitute for the missing spatial coherence of the growth process to track layered growth in detail, even in a growth regime in which there are no conventional growth oscillations of the X-ray intensity. This has opened the door for detailed dynamics studies of individual atomic layers during real-world growth and patterning, not just in perfect single-crystal growth cases, which greatly expands the applicability of in-situ X-ray scattering methods. Step-flow dynamics in mounded polycrystalline growth has been studied separately for two thin film organic semiconductors deposited by thermal deposition in a vacuum environment, C60 and diindenoperylene (DIP). Highly oriented polycrystalline thin films are readily obtained in both systems, where mounds are composed of crystalline monolayer-height steps and terraces in a so-called wedding cake morphology. The formation of mounds is understood to be due to significant Ehrlich-Schwoebel step edge barriers that inhibit molecules from hopping down from one layer to the one below. The mounds exhibit local step flow, which can be monitored using coherent X-ray scattering. This is made possible due to heterodyning between scattering from the average mounds and the moving steps, which becomes visible in XPCS analysis. The effect of desorption, i.e. re-evaporation of deposited molecules is found to be important for understanding these processes. The impact of this work is to enable testing of models of step dynamics, the shape of mounds, and merging of mounds to form continuous thin films. Highly ordered polycrystalline thin films deposited on inexpensive substrates have applications in thin film solar cells and other organic electronic devices. In a separate set of experiments, speckle analysis during self-organized ion beam nanopatterning reveals memory stretching back to the beginning of patterning in the early stages and enables measurement of the velocity of self-organized patterns across surfaces providing the possibility of stringent new tests of the theory of pattern formation and motion.

36 MATERIALS SCIENCE↗

DOE OSTI2026

Comparative mitogenomics of kingdom Fungi – evolutionary insights and metagenomic applications

Mitochondria are essential components of eukaryotic cells, responsible for ATP production through oxidative phosphorylation. Despite their biological importance, unique challenges have hindered the adoption of automated mitochondrial genome (mitogenome) annotation methods, obstructing mitochondrial comparative genomics in a broad evolutionary context. Using Fungi as a study system and a Joint Genome Institute (JGI) annotated high-quality reference set, we observed broad patterns of mitochondrial evolution across the kingdom. We found that the median fungal mitogenome size is 58 kb and identified exceptionally large examples over 1 Mb in Pezizomycetes. All 14 expected oxidative phosphorylation protein-coding genes, plus rps3, were generally conserved. We found evidence of major evolutionary transitions within the Ascomycota, including the transfer of mitochondrially encoded atp8 and atp9 to the nuclear genomes across the Pezizomycotina and shifts in mitogenome tRNA patterns across the kingdom. We found substantial concordance between mitochondrial and nuclear evolution, enabling us to document 3131 total fungal mitogenomes from JGI-derived metagenomic datasets. We also identified 6467 total undeclared mitogenomes embedded in Genbank fungal nuclear assemblies. We provide interactive tools for mitogenome analysis through the JGI MycoCosm platform. Collectively, this work generated nearly 10 000 new fungal mitogenome annotations, providing a foundation and resources for future exploration of comparative fungal mitogenomics.

Ahrendt, Steven R. [USDOE Joint Genome Institute (↗

NASA NTRS2019

In Situ Observation of Growth Dynamics in DECLIC Directional Solidification Insert Onboard ISS: DSI-R Flight Campaign

The study of solidification microstructure formation is of utmost importance for materials design and processing, as solid-liquid interface patterns largely govern mechanical and physical properties. Pattern selection occurs under dynamic conditions of growth in which the initial morphological instability evolves nonlinearly and undergoes a reorganization process. The dynamic and nonlinear nature of this instability renders in situ observation of the interface an invaluable tool to gain knowledge on the time-evolution of the interface pattern. Transparent organic analogs, which solidify like metallic alloys, allow direct visualization of interface dynamics. Extensive ground-based studies of both metallic and organic bulk samples have established the presence of significant convection during solidification processes that alters the formation of interfacial microstructures. A reduced-gravity environment is therefore mandatory for fluid flow elimination in bulk samples. In the framework of the CNES project MISOL3D (MIcrostrutures de SOLidification 3D) and the NASA projects DSIP (Dynamical Selection of 3D Interface Patterns), SPADES (SPAtiotemporal Evolution of three-dimensional DEndritic array Structures) and CAMUS (ComputAtional Studies of MicrostrUcture Formation During Alloy Solidification in Microgravity), we participated in the development of the Directional Solidification Insert (DSI) of the DEvice for the study of Critical Liquids and Crystallization (DECLIC). The DECLIC-DSI is dedicated to in situ and real-time characterization of solid-liquid interface patterns during directional solidification of transparent alloys in diffusive transport regime. Between April 2010 and March 2011, the first ISS campaign (DSI) explored the entire range of microstructures resulting in unprecedented observations. A second campaign (DSI-R), performed between October 2017 and December 2018, in which the insert contained an alloy of higher solute concentration, allowed to complete the benchmark database. The increase of solute concentration resulted in well-developed dendritic patterns at lower velocities (lower interface curvature and larger tip radius). The microstructure resulting from dendritic growth is dominant in metallurgy so that it is fundamental to understand the mechanisms of its formation. The main aims of this experimental campaign are to understand: the mechanisms of the cell to dendrite transition, the fundamental mechanisms of sidebranching formation, the dependence of dendrite tip shapes on growth conditions, the interaction of primary array and secondary sidebranches, and the influence of subgrain boundaries on the spatiotemporal organization of the array structure. Preparation, analysis and interpretation of the experiments performed onboard ISS are considerably enhanced by experiments performed on ground using thin-samples (Pr. Trivedi’s group) and phase-field simulations of microstructure formation in a diffuse growth regime (Pr. Karma’s group). In this summary, we will present an initial assessment of the results obtained during the DSI-R campaign. Nomenclature Vp: pulling velocity G: thermal gradient L: solidified length rtip: tip curvature radius Acronyms/Abbreviations CADMOS: Centre d'Aide au Développement des activités en Micro-pesanteur et des Opérations Spatiales CNES: Centre National d’Études Spatiales DECLIC: Device for the study of Critical LIquids and Crystallization DSI: Directional Solidification Insert DSI-R: Directional Solidification Insert - Refurbish ISS: International Space Station NASA: National Aeronautics and Space Administration PF: phase-field SCN: Succinonitrile 3D: three-dimensional

Mota, F.L.↗

NASA NTRS1993

Multiple flow regimes in the Northern Hemisphere winter. I - Methodology and hemispheric regimes. II - Sectorial regimes and preferred transitions

Multivariate pdfs in the phase space of large-scale atmospheric motions are examined in order to identify recurrent and persistent flow patterns. The extent to which intraseasonal variablity can be described and understood in terms of multiple flow regimes is clarified. It is shown that the synoptically intriguing and statistically significant inhomogeneities exhibited by the 2D phase plane on the periphery of the distribution are due to the existence of persistent and recurrent anomaly patterns. It is argued that these inhomgeneities are obscured when PDFs are examined in a smaller-dimensional subspace than dynamically desired. A synoptic characterization of onsets and breaks for the flow regimes is given by compositing. In situ evolutions of anomaly patterns, slow westward shifts of high-latitude anomaly centers, and successive downstream increase of anomaly magnitudes are the typical signatures of such events.

Kimoto, Masahide↗

NASA NTRS1999

Quantifying Void Ratio Variation in Sand using Computed Tomography

A series of displacement-controlled, conventional, drained axisymmetric (triaxial) experiments were conducted on dry Ottawa sand specimens at very low effective confining stresses in a microgravity environment aboard the Space Shuttle during the NASA STS-89 mission. Post-flight analysis included studying the internal fabric and failure patterns of these specimens using Computed Tomography (CT). The CT scans of three specimens subjected to different compression levels (uncompressed specimen, a specimen compressed to 3.3% nominal axial strain (epsilon(sub a)), and a specimen compressed to 25% epsilon(sub a)) are presented to investigate the evolution of instability patterns and to quantify void ratio variation. The progress of failure is described and discussed. Also, specimens' densities were calibrated using standard ASTM procedures and void ratio spatial variation was calculated and represented by contour maps and histograms. The CT technique demonstrated good ability to detect specimen inhomogeneities, localization patterns, and quantifying void ratio variation within sand specimens.

Alshibli, Khalid A.↗

NASA NTRS1984

The search for Martian life begins, 1959 - 1965

When the Viking spacecraft was launched to Mars in 1975, three biological experiments and a gas chromatograph-mass spectrometer, instruments with an intellectual and technological history reaching back to the early days of American space science, were on board. A systematic study of the evolution of the Martian surface and atmosphere was conceived with the following goals: (1) determination of the physical and chemical conditions of the martian surface as a potential environment for life; (2) determination whether life is or was present on Mars; (3) determination of the characteristics of that life, if present; and (4) investigation of the pattern of chemical evolution without life.

Source record↗

NASA NTRS1989

The evolution of ecological tolerance in prokaryotes

The ecological ranges of Archaeobacteria and Eubacteria are constrained by a requirement for liquid water and the physico-chemical stability limits of biomolecules, but within this broad envelope, prokaryotes have evolved adaptations that permit them to tolerate a remarkable spectrum of habitats. Laboratory experiments indicate that prokaryotes can adapt rapidly to novel environmental conditions, yet geological studies suggest early diversification and long-term stasis within the prokaryotic kingdoms. These apparently contradictory perspectives can be reconciled by understanding that, in general, rates and patterns of prokaryotic evolution reflect the developmental history of the Earth's surface environments. Our understanding of modern microbial ecology provides a lens through which our accumulating knowledge of physiology, molecular phylogeny and the Earth's history can be integrated and focussed on the phenomenon of prokaryotic evolution.

NASA Discipline Number 52-30↗

NASA NTRS2002

Global Precipitation Analyses at Time Scales of Monthly to 3-Hourly

Global precipitation analysis covering the last few decades and the impact of the new TRMM precipitation observations are discussed. The 20+ year, monthly, globally complete precipitation analysis of the World Climate Research Program's (WCRP/GEWEX) Global Precipitation Climatology Project (GPCP) is used to explore global and regional variations and trends and is compared to the much shorter TRMM (Tropical Rainfall Measuring Mission) tropical data set. The GPCP data set shows no significant trend in precipitation over the twenty years, unlike the positive trend in global surface temperatures over the past century. Regional trends are also analyzed. A trend pattern that is a combination of both El Nino and La Nina precipitation features is evident in the Goodyear data set. This pattern is related to an increase with time in the number of combined months of El Nino and La Nina during the Goodyear period. Monthly anomalies of precipitation are related to ENRON variations with clear signals extending into middle and high latitudes of both hemispheres. The GPCP daily, 1 degree latitude-longitude analysis, which is available from January 1997 to the present is described and the evolution of precipitation patterns on this time scale related to El Nino and La Nina is described. Finally, a TRMM-based Based analysis is described that uses TRMM to calibrate polar-orbit microwave observations from SSM/I and geosynchronous OR observations and merges the various calibrated observations into a final, Baehr resolution map. This TRMM standard product will be available for the entire TRMM period (January Represent). A real-time version of this merged product is being produced and is available at 0.25 degree latitude-longitude resolution over the latitude range from 50 deg. N -50 deg. S. Examples will be shown, including its use in monitoring flood conditions.

Adler, Robert F.↗

NASA NTRS2002

Global Precipitation Analyses at Monthly to 3-HR Time Scales

Global precipitation analysis covering the last few decades and the impact of the new TRMM precipitation observations are discussed. The 20+ year, monthly, globally complete precipitation analysis of the World Climate Research Program's (WCRP/GEWEX) Global Precipitation Climatology Project (GPCP) is used to explore global and regional variations and trends and is compared to the much shorter TRMM(Tropica1 Rainfall Measuring Mission) tropical data set. A trend pattern that is a combination of both El Nino and La Nina precipitation features is evident in the 20-year data set. This pattern is related to an increase with time in the number of combined months of El Nino and La Nina during the 20 year period. Monthly anomalies of precipitation are related to ENSO variations with clear signals extending into middle and high latitudes of both hemispheres. The GPCP daily, 1deg latitude-longitude analysis, which is available from January 1997 to the present is described and the evolution of precipitation patterns on this time scale related to El Nino and La Nina is described. Finally, a TRMM-based 3-hr analysis is described that uses TRMM to calibrate polar-orbit microwave observations from SSM/I and geosynchronous IR observations and merges the various calibrated observations into a final, 3-hr resolution map. This TRMM standard product will soon be available for the entire TRMM period (January 1998- present). A real-time version of this merged product is being produced and is available at 0.25deg latitude-longitude resolution over the latitude range from 50degN-50degS. Images from this data set can be seen at the U.S. TRMM web site (trmm.gsfc.nasa.gov). Examples will be shown, including its use in monitoring flood conditions and relating weather-scale events to climate variations.

Adler, Robert F.↗

NASA NTRS2002

Global Precipitation Analyses (3-Hourly to Monthly) Using TRMM, SSM/I and other Satellite Information

Global precipitation analysis covering the last few decades and the impact of the new TRMM precipitation observations are discussed. The 20+ year, monthly, globally complete precipitation analysis of the World Climate Research Program's (WCRP/GEWEX) Global Precipitation Climatology Project (GPCP) is used to explore global and regional variations and trends and is compared to the much shorter TRMM(Tropical Rainfall Measuring Mission) tropical data set. The GPCP data set shows no significant trend in precipitation over the twenty years, unlike the positive trend in global surface temperatures over the past century. Regional trends are also analyzed. A trend pattern that is a combination of both El Nino and La Nina precipitation features is evident in the 20-year data set. This pattern is related to an increase with time in the number of combined months of El Nino and La Nina during the 20 year period. Monthly anomalies of precipitation are related to ENS0 variations with clear signals extending into middle and high latitudes of both hemispheres. The GPCP daily, 1 deg. latitude-longitude analysis, which is available from January 1997 to the present is described and the evolution of precipitation patterns on this time scale related to El Nino and La Nina is discussed. Finally, a TRMM-based 3-hr analysis is described that uses TRMM to calibrate polar-orbit microwave observations from SSM/I and geosynchronous IR observations and merges the various calibrated observations into a final, 3-hr resolution map. This TRMM standard product will be available for the entire TRMM period (January 1998-present). A real-time version of this merged product is being produced and is available at 0.25 deg. latitude-longitude resolution over the latitude range from 5O deg. N-50 deg. S. Examples are shown, including its use in monitoring flood conditions.

Adler, Robert F.↗

NASA NTRS1980

Doppler radar observations of the three-dimensional turbulent structure of a quasi-steady thunderstorm

The spatial patterns and temporal evolution of Doppler radar-inferred turbulence within a quasi-steady, left-moving thunderstorm are reported. An organized downdraft circulation was observed, which maintained a persistent, continuously-propagating, anticyclonic and turbulent updraft. The updrafts attained peak speeds of 25 m/s, and maximum estimated reflectivity factors exhibited peak magnitudes of 50-55 dBZ. Mechanical and buoyant production appeared to be the primary generators of turbulence, although buoyancy generation may have also significantly contributed, since turbulent and dynamic entrainment into the vertically accelerating updraft was appreciable below the strongest turbulent activity at 7 km. Patterns of the radial shears of radial velocity exhibited a significant decrease in strength and areal coverage as the storm weakened, which is attributed to decreased activity of large turbulent eddies and the diminution of large-scale mean wind gradients produced by vertical exchanges of horizontal momentum and strong updraft gradients.

Knupp, K. R.↗

NASA NTRS2002

The Effects of Amazon Deforestation on Rainfall

This study begins with the hypothesis that heavily deforested regions will experience increased surface heating, leading to local circulations that will ultimately enhance the rainfall, or at least, change the pattern of diurnal evolution of rainfall. This would be an important finding because several modeling studies have concluded that widespread deforestation would lead to decreased rainfall. Towards that end rain estimates from a combined GOES infrared/TRMM microwave technique were analyzed with respect to percent forest cover from Landsat data (courtesy of TRFIC at Michigan State University) and GOES visible channel data over a deforested area in Rondonia (southwest Brazil). Five 1" x 1" areas of varying forest cover were examined during the onset of the wet season in Amazonia (Aug-Sept), when the effects of the surface would not be dominated by large-scale synoptic weather patterns. Preliminary results revealed that: maximum rainfall fell in most deforested area; heavily forested areas received the least rainfall; cumulus cloud development initiated at borders; the amplitude of the diurnal cycle of precipitation was a function of th surface cover. Further work will be presented detailing effects of land surface cover on the GOES infrared-measured surface heating, GOES visible observed cumulus development, thunderstorm initiation based on the location of temperature minima in the infrared data, and estimated rainfall and its diurnal cycle from a combined GOES/TRMM technique. Rainfall estimates derived from non-geosynchronous microwave observations (i.e. Goddard Profiling Algorithm, GPROF) will also be examined.

Starr, David OC.↗

NASA NTRS1986

Spectral evolution of pulse structures in gamma-ray bursts

The Hard X-Ray Burst Spectrometer (HXRBS) and Gamma-Ray Spectrometer (GRS) data from the Solar Maximum Mission satellite have been searched for gamma-ray bursts with sufficient intensities and relatively simple time profiles such that their spectral behavior may be studied on a time scale of about 1 s. Ten such events were observed with the GRS experiment, and four of these were also detected within the HXRBS field of view. Details are presented for two moderately intense bursts with relatively simple structure. The spectral evolutions of the remaining events are summarized briefly. Results suggest a pattern in the spectral evolution within burst pulses: a tendency for the high-energy emission to lead the low-energy emission, in contrast to the correlation of intensity and spectral hardness reported by Golenetskii et al. (1983).

Norris, J. P.↗

NASA NTRS1999

Direct Numerical Simulation of Wetting and Spreading Behavior on Heterogeneous and Roughened Substrates

A method of calculation is presented that allows the simulation of the time-dependent three-dimensional motion of thin liquid layers on solid substrates for systems with finite equilibrium contact angles. The contact angle is a prescribed function of position on the substrate. Similar mathematical models are constructed for substrates with a pattern of roughness. Evolution equations are given, using the lubrication approximation, that include viscous, capillary and disjoining forces. Motion to and from dry substrate regions is made possible by use of a thin energetically-stable wetting layer. We simulate motion on heterogeneous substrates with periodic arrays of high contact-angle patches. Two different problems are treated for heterogenous substrates. The first is spontaneous motion driven only by wetting forces. If the contact-angle difference is sufficiently high, the droplet can find several different stable positions, depending on the previous history of the motion. A second simulation treats a forced cyclical motion. Energy dissipation per cycle for a heterogeneous substrate is found to be larger than for a uniform substrate with the same total energy. The Landau-Levich solution for plate removal from a liquid bath is extended to account for a pattern of roughness on the plate.

Schwartz, Leonard W.↗

DOE OSTI2020

Analyzing the Validity of Brazilian Testing Using Digital Image Correlation and Numerical Simulation Techniques

Characterizing the mechanical behavior of rocks plays a crucial role to optimize the fracturing process in unconventional reservoirs. However, due to the intrinsic anisotropy and heterogeneity in unconventional resources, fracture process prediction remains the most significant challenge for sustainable and economic hydrocarbon production. During the deformation tracking under compression, deploying conventional methods (strain gauge, extensometer, etc.) is insufficient to measure the deformation since the physical attachment of the device is restricted to the size of the sample, monitoring limited point-wise deformation, producing difficulties in data retrieval, and a tendency to lose track in failure points, etc. Where conventional methods are limited, the application of digital image correlation (DIC) provides detailed and additional information of strain evolution and fracture patterns under loading. DIC is an image-based optical method that records an object with a camera and monitors the random contrast speckle pattern painted on the facing surface of the specimen. To overcome the existing limitations, this paper presents numerical modeling of Brazilian disc tests under quasi-static conditions to understand the full-field deformation behaviors and finally, it is validated by DIC. As the direct tensile test has limitations in sample preparation and test execution, the Brazilian testing principle is commonly used to evaluate indirectly the tensile strength of rocks. The two-dimensional numerical model was built to predict the stress distribution and full-field deformation on Brazilian disc under compression based on the assumptions of a homogenous, isotropic and linear elastic material. The uniaxial compression test was conducted using the DIC technique to determine the elastic properties of Spider Berea sandstone, which were used as inputs for the simulation model. The model was verified by the analytical solution and compared with the digital image correlation. The numerical simulation results showed that the solutions matched reasonably with the analytical solutions where the maximum deviation of stress distribution was obtained as 14.59%. The strain evolution (normal and shear strains) and displacements along the central horizontal and vertical planes were investigated in three distinguishable percentages of peak loads (20%, 40%, and 90%) to understand the deformation behaviors in rock. The simulation results demonstrated that the strain evolution contours consistently matched with DIC generated contours with a reasonable agreement. The changes in displacement along the central horizontal and vertical planes showed that numerical simulation and DIC generated experimental results were repeatable and matched closely. In terms of validation, Brazilian testing to measure the indirect tensile strength of rocks is still an issue of debate. The numerical model of fracture propagation supported by digital image correlation from this study can be used to explain the fracturing process in the homogeneous material and can be extended to non-homogeneous cases by incorporating heterogeneity, which is essential for rock mechanics field applications.

58 GEOSCIENCES↗

DOE OSTI2022

Oxygen vacancy dynamics in monoclinic metallic VO 2 domain structures

It was demonstrated recently that the nano-optical and nanoelectronic properties of VO 2 can be spatially programmed through the local injection of oxygen vacancies by atomic force microscope writing. In this work, we study the dynamic evolution of the patterned domain structures as a function of the oxygen vacancy concentration and the time. A threshold doping level is identified that is critical for both the metal–insulator transition and the defect stabilization. The diffusion of oxygen vacancies in the monoclinic phase is also characterized, which is directly responsible for the short lifetimes of sub-100 nm domain structures. This information is imperative for the development of oxide nanoelectronics through defect manipulations.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

DOE OSTI2020

The impact of long-range dispersal on gene surfing

Range expansions lead to distinctive patterns of genetic variation in populations, even in the absence of selection. These patterns and their genetic consequences have been well studied for populations advancing through successive short-ranged migration events. However, most populations harbor some degree of long-range dispersal, experiencing rare yet consequential migration events over arbitrarily long distances. Although dispersal is known to strongly affect spatial genetic structure during range expansions, the resulting patterns and their impact on neutral diversity remain poorly understood. Here, we systematically study the consequences of long-range dispersal on patterns of neutral variation during range expansion in a class of dispersal models which spans the extremes of local (effectively short-ranged) and global (effectively well-mixed) migration. We find that sufficiently long-ranged dispersal leaves behind a mosaic of monoallelic patches, whose number and size are highly sensitive to the distribution of dispersal distances. We develop a coarse-grained model which connects statistical features of these spatial patterns to the evolution of neutral diversity during the range expansion. We show that growth mechanisms that appear qualitatively similar can engender vastly different outcomes for diversity: Depending on the tail of the dispersal distance distribution, diversity can be either preserved (i.e., many variants survive) or lost (i.e., one variant dominates) at long times. Our results highlight the impact of spatial and migratory structure on genetic variation during processes as varied as range expansions, species invasions, epidemics, and the spread of beneficial mutations in established populations.

59 BASIC BIOLOGICAL SCIENCES↗