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At least 109 records · Page 6

Karyotypes of Human Lymphocytes Exposed to High-Energy Iron Ions

Chromosomal aberrations were analyzed using multicolor fluorescence in situ hybridization (mFISH) in human peripheral blood lymphocytes after in vitro exposure to gamma rays or accelerated (56)Fe ions (1 GeV/nucleon, 145 keV/microm) at Brookhaven National Laboratory (Upton, NY). Doses of 0.3 and 3 Gy were used for both radiation types. Chromosomes were prematurely condensed by a phosphatase inhibitor (calyculin A) to avoid the population selection bias observed at metaphase as a result of the severe cell cycle delays induced by heavy ions. A total of 1053 karyotypes (G(2) and M phases) were analyzed in irradiated lymphocytes. Results revealed different distribution patterns for chromosomal aberrations after low- and high-LET radiation exposures: Heavy ions induced a much higher fraction of cells with multiple aberrations, while the majority of the aberrant cells induced by low doses of gamma rays contained a single aberration. The high fraction of complex-type exchanges after heavy ions leads to an overestimation of simple-type asymmetrical interchanges (dicentrics) from analysis of Giemsa-stained samples. However, even after a dose of 3 Gy iron ions, about 30% of the cells presented no complex-type exchanges. The involvement of individual chromosomes in exchanges was similar for densely and sparsely ionizing radiation, and no statistically significant evidence of a nonrandom involvement of specific chromosomes was detected.

NASA Center JSC↗

MOVPE of GaSb/InGaAsSb Multilayers and Fabrication of Dual Band Photodetectors

Metalorganic vapor phase epitaxy (MOVPE) of GaSb/InGaAsSb multilayer thin films and fabrication of bias-selectable dual band photodetectors are reported. For the dual band photodetectors the short wavelength detector, or the upper p- GaSb/n-GaSb junction photodiode, is placed optically ahead of the long wavelength one, or the lower photodiode. The latter is based on latticed-matched In0.13Ga0.87As0.11Sb0.89 with bandgap near 0.6 eV. Specifically, high quality multilayer thin films are grown sequentially from top to bottom as p+-GaSb/p-GaSb/n-GaSb/n-InGaAsSb/p-InGaAsSb/p-GaSb on undoped p-type GaSb substrate, and as n-GaSb/p-GaSb/p-InGaAsSb/n-InGaAsSb/n-GaSb on Te-doped n-type GaSb substrate respectively. The multilayer thin films are characterized by optical microscope, atomic force microscope (AFM), electron microprobe analyses etc. The photodiode mesa steps are patterned by photolithography with wet chemical etching and the front metallization is carried out by e-beam evaporation with Pd/Ge/Au/Ti/Au to give ohmic contact on both n- and p-type Sb based layer surfaces. Dark I-V measurements show typical diode behavior for both the upper and lower photodiodes. The photoresponsivity measurements indicate that both the upper and lower photodiodes can sense the infrared illumination corresponding to their cutoff wavelengths respectively, comparable with the simulation results. More work is underway to bring the long wavelength band to the medium infrared wavelength region near 4 micrometers.

Xiao, Ye-Gao↗

Filling in the Gaps: Xenoliths in Meteorites are Samples of "Missing" Asteroid Lithologies

We know that the stones that fall to earth as meteorites are not representative of the full diversity of small solar system bodies, because of the peculiarities of the dynamical processes that send material into Earth-crossing paths [1] which result in severe selection biases. Thus, the bulk of the meteorites that fall are insufficient to understand the full range of early solar system processes. However, the situation is different for pebble- and smaller-sized objects that stream past the giant planets and asteroid belts into the inner solar system in a representative manner. Thus, micrometeorites and interplanetary dust particles have been exploited to permit study of objects that do not provide meteorites to earth. However, there is another population of materials that sample a larger range of small solar system bodies, but which have received little attention - pebble-sized foreign clasts in meteorites (also called xenoliths, dark inclusions, clasts, etc.). Unfortunately, most previous studies of these clasts have been misleading, in that these objects have simply been identified as pieces of CM or CI chondrites. In our work we have found this to be generally erroneous, and that CM and especially CI clasts are actually rather rare. We therefore test the hypothesis that these clasts sample the full range of small solar system bodies. We have located and obtained samples of clasts in 81 different meteorites, and have begun a thorough characterization of the bulk compositions, mineralogies, petrographies, and organic compositions of this unique sample set. In addition to the standard e-beam analyses, recent advances in technology now permit us to measure bulk O isotopic compositions, and major- though trace-element compositions of the sub-mm-sized discrete clasts. Detailed characterization of these clasts permit us to explore the full range of mineralogical and petrologic processes in the early solar system, including the nature of fluids in the Kuiper belt and the outer main asteroid belt, as revealed by the mineralogy of secondary phases.

Zolensky, Mike↗

Participatory Technology Assessment for Mars Mission Planning: Public Values and Rationales

Public support and interest are needed to design an ambitious human spaceflight program. However, it is difficult to understand what the public values and would support. And it is even more challenging and rare to consider public views prior to actually developing a mission. Participatory technology assessment (pTA) is a method that aims to understand public preferences and values in order to inform upstream government decision-making. We assess a recently completed experiment in pTA, the "Informing NASA's Asteroid Initiative" project. Through a cooperative agreement with NASA, the Expert and Citizen Assessment of Science and Technology (ECAST) network conducted a pTA-based forum on NASA's Asteroid Initiative and the Journey to Mars. ECAST organized two citizen forums in Phoenix, Arizona and Boston, Massachusetts in November 2014, with a total of 183 citizens selected so as to minimize self-selection biases. This paper focuses on the "Journey to Mars" session, which had the primary goal of soliciting citizen perceptions about different Mars exploration scenarios and mission planning approaches. Citizens were given background information about three potential Mars exploration scenarios that NASA could carry out: 1) Crewed orbital mission to direct robots on the surface of Mars; 2) Short exploratory crewed mission to the surface of Mars; and 3) establishing a permanent settlement. Citizens then engaged in structured facilitated discussions about their preferences among the scenarios and NASA's mission planning approach. Using a grounded theory coding approach, we analyzed participants' written rationales and dialogue about Mars exploration. In general, participants did not show a strong preference for any particular mission profile, but there was a slight preference for the crewed orbital robotics scenario. Participants who supported this approach saw it as the quickest, safest, and least costly road to a successful mission. However, many participants were interested in seeing "boots on the ground," as they believed this would propel scientific advancement, increase excitement about space exploration, and make humans a "two-planet species."

Bertrand, Pierre↗

Early Ultraviolet Observations of Type IIn Supernovae Constrain the Asphericity of Their Circumstellar Material

We present a survey of the early evolution of 12 Type IIn supernovae (SNe IIn) at ultraviolet and visible light wavelengths. We use this survey to constrain the geometry of the circumstellar material (CSM) surrounding SN IIn explosions, which may shed light on their progenitor diversity. In order to distinguish between aspherical and spherical CSM, we estimate the blackbody radius temporal evolution of the SNe IIn of our sample, following the method introduced by Soumagnac et al. We find that higher-luminosity objects tend to show evidence for aspherical CSM. Depending on whether this correlation is due to physical reasons or to some selection bias, we derive a lower limit between 35% and 66% for the fraction of SNe IIn showing evidence for aspherical CSM. This result suggests that asphericity of the CSM surrounding SNe IIn is common—consistent with data from resolved images of stars undergoing considerable mass loss. It should be taken into account for more realistic modeling of these events.

Maayane T Soumagnac↗

Brightest Cluster Galaxy ellipticity as proxy for halo shape: Orientation bias, assembly bias, and potential selection effects in SZ-selected clusters

The orientation of triaxial galaxy clusters with respect to the line-of-sight is expected to be one of the prime sources of scatter and potential bias in optical observables (e.g., richness and weak-lensing signal) of galaxy clusters. In this work, we use the observed shape of the central Brightest Cluster Galaxy (BCG) as proxy for the orientation along the line-of-sight for clusters selected via the Sunyaev-Zel'dovich (SZ) effect from the South Pole Telescope (SPT) and Atacama Cosmology Telescope (ACT) surveys, matched to optically selected clusters from the Dark Energy Survey Year 3 (DES). We construct two samples of clusters that are designed to be identical in SZ mass estimate and redshift but with the roundest vs. the most elliptical BCGs, which we expect to correspond to BCGs (and clusters) with major axes aligned along the line-of-sight vs. in the plane of the sky, respectively. We find that the optical richness of round-BCG clusters is $\sim 10$% larger than that of elliptical-BCG clusters, in agreement with the expectation from projection effects and presenting the first such detection in data. The density profiles, however, are not in agreement with the expectation from projection effects: the 1-halo term (below $6~h^{-1}\rm{Mpc}$) of both the weak-lensing and galaxy density profiles are the same for the subsamples, contrary to previous studies based on X-ray selected clusters. In the 2-halo regime (above $6~h^{-1}\rm{Mpc}$), we find a significant excess of the elliptical-BCG cluster profiles compared to the round-BCG cluster profiles, which is the opposite of the expectation from numerical simulations. We hypothesize that the intrinsic shape of the BCG reflects not just the orientation angle, but also intrinsic properties of the cluster which can affect both the SZ signal and the amplitude of the 2-halo term.

Srinivasan, Radhakrishnan [SUNY, Stony Brook] (ORC↗

The DEEP2 Galaxy Redshift Survey: Design, Observations, Data Reduction, and Redshifts

We describe the design and data analysis of the DEEP2 Galaxy Redshift Survey, the densest and largest high-precision redshift survey of galaxies at z approx. 1 completed to date. The survey was designed to conduct a comprehensive census of massive galaxies, their properties, environments, and large-scale structure down to absolute magnitude MB = −20 at z approx. 1 via approx.90 nights of observation on the Keck telescope. The survey covers an area of 2.8 Sq. deg divided into four separate fields observed to a limiting apparent magnitude of R(sub AB) = 24.1. Objects with z approx. < 0.7 are readily identifiable using BRI photometry and rejected in three of the four DEEP2 fields, allowing galaxies with z > 0.7 to be targeted approx. 2.5 times more efficiently than in a purely magnitude-limited sample. Approximately 60% of eligible targets are chosen for spectroscopy, yielding nearly 53,000 spectra and more than 38,000 reliable redshift measurements. Most of the targets that fail to yield secure redshifts are blue objects that lie beyond z approx. 1.45, where the [O ii] 3727 Ang. doublet lies in the infrared. The DEIMOS 1200 line mm(exp −1) grating used for the survey delivers high spectral resolution (R approx. 6000), accurate and secure redshifts, and unique internal kinematic information. Extensive ancillary data are available in the DEEP2 fields, particularly in the Extended Groth Strip, which has evolved into one of the richest multiwavelength regions on the sky. This paper is intended as a handbook for users of the DEEP2 Data Release 4, which includes all DEEP2 spectra and redshifts, as well as for the DEEP2 DEIMOS data reduction pipelines. Extensive details are provided on object selection, mask design, biases in target selection and redshift measurements, the spec2d two-dimensional data-reduction pipeline, the spec1d automated redshift pipeline, and the zspec visual redshift verification process, along with examples of instrumental signatures or other artifacts that in some cases remain after data reduction. Redshift errors and catastrophic failure rates are assessed through more than 2000 objects with duplicate observations. Sky subtraction is essentially photon-limited even under bright OH sky lines; we describe the strategies that permitted this, based on high image stability, accurate wavelength solutions, and powerful B-spline modeling methods. We also investigate the impact of targets that appear to be single objects in ground-based targeting imaging but prove to be composite in Hubble Space Telescope data; they constitute several percent of targets at z approx. 1, approaching approx. 5%-10% at z > 1.5. Summary data are given that demonstrate the superiority of DEEP2 over other deep high-precision redshift surveys at z approx. 1 in terms of redshift accuracy, sample number density, and amount of spectral information. We also provide an overview of the scientific highlights of the DEEP2 survey thus far.

Galaxy↗

Benchmarking CME Arrival Time and Impact: Progress on Metadata, Metrics, and Events

Accurate forecasting of the arrival time and subsequent geomagnetic impacts of coronal mass ejections (CMEs) at Earth is an important objective for space weather forecasting agencies. Recently, the CME Arrival and Impact working team has made significant progress toward defining communit yagreed metrics and validation methods to assess the current state of CME modeling capabilities. This will allow the community to quantify our current capabilities and track progress in models over time. First, it is crucial that the community focuses on the collection of the necessary metadata for transparency and reproducibility of results. Concerning CME arrival and impact we have identified six different metadata types: 3D CME measurement, model description, model input, CME (non)arrival observation, model output data, and metrics and validation methods. Second, the working team has also identified a validation time period, where all events within the following two periods will be considered: 1 January 2011 to 31 December 2012 and January 2015 to 31 December 2015. Those two periods amount to a total of about 100 hit events at Earth and a large amount of misses. Considering a time period will remove any bias in selecting events and the event set will represent a sample set that will not be biased by user selection. Lastly, we have defined the basic metrics and skill scores that the CME Arrival and Impact working team will focus on.

Verbeke, C.↗

Investigating the impacts of solid phase extraction on dissolved organic matter optical signatures and the pairing with high‐resolution mass spectrometry data across a freshwater stream network

Abstract Advancing our understanding of dissolved organic matter (DOM) chemistry in aquatic systems necessitates the integration of data streams from multiple analytical platforms. Some measurements require pretreatment with solid phase extraction (SPE), while others are performed directly on whole water samples. Evidence has suggested that SPE will be biased against select DOM fractions, leading to concerns over the ability to establish data linkages across platforms with variable needs for SPE pretreatment, such as those from optical measurements and those that provide high‐resolution molecular information. Here, we directly addressed this concern by assessing the impact of SPE on DOM optical properties through excitation–emission matrices with parallel factor analysis (PARAFAC) for 47 samples across a stream network within a single watershed reflective of variable DOM sources. PARAFAC data was further paired with molecular information obtained by Fourier transform ion cyclotron resonance mass spectrometry (FTICR‐MS). A comparison of PARAFAC models first revealed no systematic qualitative differences in major components between whole water DOM and DOM isolated by SPE (SPE‐DOM); however, quantitative biases against select components were observed. Further linkages with FTICR‐MS data revealed that the molecular fingerprint associated with each PARAFAC component was consistent between the whole water DOM and SPE‐DOM. Our results suggest that bulk scale linkages across these analytical platforms could be inferred irrespective of the observed quantitative biases resulting from SPE for samples within this example watershed. This work represents a key step toward the systematic evaluation of linkages between optical and high‐resolution mass spectrometry datasets in freshwater lotic environments.

59 BASIC BIOLOGICAL SCIENCES↗

Plastome evolution in annual Brachypodium species reveals widespread heteroplasmy and chloroplast capture, lineage-specific codon usage bias, and low positive selection

Comparative genomics and plastome phylogenomics have advanced significantly in recent years, highlighting the diversity, possible admixture, and non-neutral evolution of the predominantly considered non-recombinant chloroplast genomes in angiosperms. The grass genus Brachypodium serves as a powerful model for studying evolutionary processes in monocots. We analyzed 287 plastomes across the native circum-Mediterranean range of the three annual Brachypodium species ( B. distachyon, B. stacei, B. hybridum ), focusing on their structural variation, selection patterns and phylogenomic relationships. Our analyses confirmed the differentiation of the S and D plastomes, inherited respectively from the diploid progenitor species B. stacei and B. distachyon . We identified novel structural rearrangements and indels, and unique repeat motifs, along with widespread heteroplasmy, particularly in ancestral B. hybridum -D plastotypes. SNP diversity varied among plastotypes, reflecting population dynamics and evolutionary histories, with B. hybridum -D plastotypes showing the highest normalized diversity and B. hybridum -S the lowest. Positive selection was detected in 29 plastid genes by Tajima’s neutrality test, and in nine genes by site and branch-site evolutionary models, including matK, ndhF, rbcL, and rpoC2. Phylogenomic analyses revealed well-supported clades corresponding to the S and D plastome lineages, with frequent chloroplast capture events and long-distance dispersals shaping their evolutionary trajectories.

allopolyploidy↗

Cation–polymer interactions and local heterogeneity determine the relative order of alkali cation diffusion coefficients in PEGDA hydrogels

Current research efforts are focused on endowing polymer membranes with ion–ion selectivity by incorporating ion–polymer interactions into materials to bias the selective partitioning and or diffusivity of one species over another. However, little is known about the impact of such interactions on the mechanisms of ion transport. In this study, we probe the influence of cation–polymer interactions on cation, anion, and salt diffusivity in a model membrane material, poly(ethylene glycol) diacrylate (PEGDA) by modeling concentrated polyethylene oxide solutions via molecular dynamics simulations. These results are compared to published experimental data for LiCl, NaCl, and KCl diffusion in PEGDA. Experimentally, the order of salt and cation diffusion coefficients for LiCl, NaCl, and KCl deviate from the order in aqueous solutions. Here, simulations identify these deviations to arise from cation–polymer coordination in the membrane. Both the fraction of bound cations and the average binding lifetime increases with decreasing cation hydration free energy (moving down the alkali series), leading to different diffusivity trends in the membrane compared to solution. However, to recover the experimentally observed order of diffusivities cations and salt in our simulations, we needed to incorporate membrane heterogeneity explicitly via a polymer charge scaling procedure. Together, our results indicate that cation–polymer interactions, as well as spatial heterogeneity within the membrane, play a critical role in dictating the observed order of alkali cation and salt diffusion coefficients in membranes.

36 MATERIALS SCIENCE↗

Pentaerythritol structure-directing agents bias aluminum siting in MFI zeolites to increase para -xylene selectivity during toluene methylation

MFI zeolites contain ten-membered ring channels (∼0.55 nm diameter) that intersect to form larger voids (∼0.70 nm diameter). The distribution of framework Al sites dictates the void environments that confine active H + sites. MFI synthesized with pentaerythritol (PET) and Na + as structure-directing agents are interrogated using kinetically controlled toluene methylation rates and xylene isomer selectivities. High para-xylene selectivity and low toluene methylation rates indicate that MFI-PET samples contain H + sites predominantly in smaller channels. As-synthesized samples contain more framework Al than Na + , indicating that some charge compensation is provided by protonated PET-solvent complexes that bias Al siting towards these smaller channels.

36 MATERIALS SCIENCE↗

Comparison of Social Media, Syndromic Surveillance, and Microbiologic Acute Respiratory Infection Data: Observational Study

Internet data can be used to improve infectious disease models. However, the representativeness and individual-level validity of internet-derived measures are largely unexplored as this requires ground truth data for study. This study sought to identify relationships between Web-based behaviors and/or conversation topics and health status using a ground truth, survey-based dataset. This study leveraged a unique dataset of self-reported surveys, microbiological laboratory tests, and social media data from the same individuals toward understanding the validity of individual-level constructs pertaining to influenza-like illness in social media data. Logistic regression models were used to identify illness in Twitter posts using user posting behaviors and topic model features extracted from users’ tweets. Of 396 original study participants, only 81 met the inclusion criteria for this study. Of these participants’ tweets, we identified only two instances that were related to health and occurred within 2 weeks (before or after) of a survey indicating symptoms. It was not possible to predict when participants reported symptoms using features derived from topic models (area under the curve [AUC]=0.51; P=.38), though it was possible using behavior features, albeit with a very small effect size (AUC=0.53; P≤.001). Individual symptoms were also generally not predictable either. The study sample and a random sample from Twitter are predictably different on held-out data (AUC=0.67; P≤.001), meaning that the content posted by people who participated in this study was predictably different from that posted by random Twitter users. Individuals in the random sample and the GoViral sample used Twitter with similar frequencies (similar @ mentions, number of tweets, and number of retweets; AUC=0.50; P=.19). To our knowledge, this is the first instance of an attempt to use a ground truth dataset to validate infectious disease observations in social media data. The lack of signal, the lack of predictability among behaviors or topics, and the demonstrated volunteer bias in the study population are important findings for the large and growing body of disease surveillance using internet-sourced data.

59 BASIC BIOLOGICAL SCIENCES↗

The Quest for New Correlations in the Realm of the Gamma-Ray Burst—Supernova Connection

Gamma-ray bursts (GRBs) are very energetic cosmological transients. Long GRBs are usually associated with Type Ib/c supernovae (SNe), and we refer to them as GRB-SNe. Since the associated SN for a given GRB is observed only at low redshift, a possible selection effect exists when we consider intrinsically faint sources that cannot be observed at high redshift. Thus, it is important to explore the possible relationships between GRB and SN parameters after these have been corrected for astrophysical biases due to the instrumental selection effects and redshift evolution of the variables involved. So far, only GRB prompt emission properties have been checked against the SN Ib/c properties without considering the afterglow (AG). This work investigates the existence of relationships among GRBs’ prompt and AG and associated SN properties. We investigate 91 bidimensional correlations among the SN and GRB observables before and after their correction for selection biases and evolutionary effects. As a result of this investigation, we find hints of a new correlation with a Pearson correlation coefficient >0.50 and a probability of being drawn by chance <0.05. This correlation is between the luminosity at the end of the GRB optical plateau emission and the rest-frame peak time of the SN. According to this relation, the brightest optical plateaus are accompanied by the largest peak times. This correlation is corrected for selection biases and redshift evolution and may provide new constraints for the astrophysical models associated with the GRB-SN connection.

79 ASTRONOMY AND ASTROPHYSICS↗

Exploratory geological analysis of AVIRIS data

The size and complexity of AVIRIS data sets makes analysis difficult. We present a technique that allows the researcher to rapidly scan the full data set in image form in order to empirically find significant spatial patterns anywhere across the spectrum. Our approach takes advantage of the speed and power of computer graphics workstations to allow real-time, interactive data manipulation and display. Empirical data selection avoids the bias inherent in theoretical selection criteria, and allows discovery of unexpected relationships within the data set. Link Winds, a prototype data analysis system under development, provides the visualization tools used in this study. We are applying this approach to geological studies in the eastern Mojave Desert.

Beratan, K. K.↗

The Stars Kepler Missed: Investigating the Kepler Target Selection Function Using Gaia DR2

The Kepler Mission revolutionized exoplanet science and stellar astrophysics by obtaining highly precise photometry of over 200,000 stars over 4 yr. A critical piece of information to exploit Kepler data is its selection function, since all targets had to be selected from a sample of half a million stars on the Kepler CCDs using limited information. Here we use Gaia DR2 to reconstruct the Kepler selection function and explore possible biases with respect to evolutionary state, stellar multiplicity, and kinematics. We find that the Kepler target selection is nearly complete for stars brighter than Kp < 14 mag and was effective at selecting main-sequence stars, with the fraction of observed stars decreasing from 95% to 60% between 14 < Kp < 16 mag. We find that the observed fraction for subgiant stars is only 10% lower, confirming that a significant number of subgiants selected for observation were believed to be main-sequence stars. Conversely we find a strong selection bias against low-luminosity red giant stars (R ≈ 3–5R {sub ⊙}, T {sub eff} ≈ 5500 K), dropping from 90% at Kp = 14 mag to below 30% at Kp = 16 mag, confirming that the target selection was efficient at distinguishing dwarfs from giants. We compare the Gaia Re-normalized Unit Weight Error (RUWE) values of the observed and nonobserved main-sequence stars and find a difference in elevated (>1.2) RUWE values at ∼σ significance, suggesting that the Kepler target selection shows some bias against either close or wide binaries. We furthermore use the Gaia proper motions to show that the Kepler selection function was unbiased with respect to kinematics.

47 OTHER INSTRUMENTATION↗