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At least 109 records · Page 6

Simulation System for Training in Laparoscopic Surgery

A computer-based simulation system creates a visual and haptic virtual environment for training a medical practitioner in laparoscopic surgery. Heretofore, it has been common practice to perform training in partial laparoscopic surgical procedures by use of a laparoscopic training box that encloses a pair of laparoscopic tools, objects to be manipulated by the tools, and an endoscopic video camera. However, the surgical procedures simulated by use of a training box are usually poor imitations of the actual ones. The present computer-based system improves training by presenting a more realistic simulated environment to the trainee. The system includes a computer monitor that displays a real-time image of the affected interior region of the patient, showing laparoscopic instruments interacting with organs and tissues, as would be viewed by use of an endoscopic video camera and displayed to a surgeon during a laparoscopic operation. The system also includes laparoscopic tools that the trainee manipulates while observing the image on the computer monitor (see figure). The instrumentation on the tools consists of (1) position and orientation sensors that provide input data for the simulation and (2) actuators that provide force feedback to simulate the contact forces between the tools and tissues. The simulation software includes components that model the geometries of surgical tools, components that model the geometries and physical behaviors of soft tissues, and components that detect collisions between them. Using the measured positions and orientations of the tools, the software detects whether they are in contact with tissues. In the event of contact, the deformations of the tissues and contact forces are computed by use of the geometric and physical models. The image on the computer screen shows tissues deformed accordingly, while the actuators apply the corresponding forces to the distal ends of the tools. For the purpose of demonstration, the system has been set up to simulate the insertion of a flexible catheter in a bile duct. [As thus configured, the system can also be used to simulate other endoscopic procedures (e.g., bronchoscopy and colonoscopy) that include the insertion of flexible tubes into flexible ducts.] A hybrid approach has been followed in developing the software for real-time simulation of the visual and haptic interactions (1) between forceps and the catheter, (2) between the forceps and the duct, and (3) between the catheter and the duct. The deformations of the duct are simulated by finite-element and modalanalysis procedures, using only the most significant vibration modes of the duct for computing deformations and interaction forces. The catheter is modeled as a set of virtual particles uniformly distributed along the center line of the catheter and connected to each other via linear and torsional springs and damping elements. The interactions between the forceps and the duct as well as the catheter are simulated by use of a ray-based haptic-interaction- simulating technique in which the forceps are modeled as connected line segments.

Basdogan, Cagatay↗

THERMAL MODELING OF HANFORD LEAD CANISTER’S HEATER BENCH TESTS

A computational fluid dynamics (CFD) model was built to simulate planned testing of heater assemblies for the Hanford Lead Canister (HLC) project. The HLC is a canister storage system that will contain heaters to simulate the decay heat of nuclear material and provide the canister storage system with environmental conditions equivalent to the operating conditions on a dry storage pad. The HLC will be equipped with long-term data collection and monitoring systems to provide an early warning of corrosion, pitting, cracking, or other signs of canister degradation that might threaten the integrity of the containment boundary over the potentially long term of dry storage. An important part of the HLC development is to confirm the function and ability of the electric heater assemblies that were specially designed to provide heating similar to the decay heat of nuclear material contained within the canister storage system. Heater bench testing is planned for early 2022 in a test configuration that does not include the canister. The goal of the bench testing is to verify that the heaters can replicate the decay heat of a canister with nuclear material and to validate the thermal models, which are critical to understanding the HLC’s thermal environment, including the local air flow within the canister storage system. Testing of the heater assemblies inside the canister system are planned in the future to validate canister level thermal models, and rigorous pre-deployment testing of the complete HLC cask and canister system is intended to be completed before the HLC is deployed in the 2025-2026 timeframe. This study presents the pre-test temperature predictions of the bench testing. A description of the heater assemblies and planned bench testing is presented. The model was developed with the commercial CFD code STAR-CCM+. An uncertainty analysis was run with the CFD model to determine the uncertainty in the temperature predictions and provide a range over which the predicted temperatures are expected to vary. The uncertainty analysis was performed by coupling STAR-CCM+ with the software Dakota, which provides advanced parametric analyses, including quantification of margins and uncertainty with computational models. This work is expected to provide insight into SNF canister behavior.

Suffield, Sarah R.↗

GridPACK Toolkit for Developing Power Grid Simulations on High Performance Computing Platforms

This paper describes the GridPACK™ framework, which is designed to help power grid engineers develop modeling software capable of running on todays high performance computers. The framework contains modules for setting up distributed power grid networks, assigning buses and branches with arbitrary behaviors to the network, creating distributed matrices and vectors, using parallel linear and non-linear solvers to solve algebraic equations, and mapping functionality to create matrices and vectors based on properties of the network. In addition, the framework contains additional functionality to support IO and to manage errors.

Palmer, Bruce J.↗

Towards real-time simulation of large space structures: Stabilization of fluid/thermal/structure interactions and implementation on high performance supercomputers

Within the Center for Space Construction, the SIMSTRUC project's objectives center around the development of simulation tools for the realistic analysis of large space structures. The word 'tools' is the broad sense; it designates mathematical models, finite element/finite difference formulations, computational algorithms, implementations on advanced computer architectures, and visualization capabilities. The results of our activities during the first year within the SIMSTRUC project are reported. On the modeling side, an alternative approach to fluid/thermal/structure interaction analysis that is a departure from the 'loosely coupled' and 'unified' approaches that are being currently practiced are described. The advantages of our approach both in terms of accuracy and computational efficiency were demonstrated. On the computational side, a software architecture for parallel/vector and massively parallel supercomputers that speeds up finite element and finite difference computations by several orders of magnitude is presented. As an example, the simulation of the deployment of a space structure that used to require over six hours of a workstation using a conventional finite element software, now runs on a multiprocessor using a parallel computation strategy in less than three seconds. In order to promote the physical understanding of the simulation behavior, a real-time visualization capability on the Connection Machine, which allows the analyst to watch the graphical animation of the results at the same time these are generated, was also developed. It is believed that by combining efficient analytical formulations with the state-of-the-art high performance computer implementations and superfast visualization capabilities, SIMSTRUC is moving fast towards the real-time simulation of large space structures. The designers as well as the researchers will certainly benefit from this technology.

Farhat, C.↗

TASK ALLOCATION IN GEO-DISTRIBUTED CYBER-PHYSICAL SYSTEMS

This paper studies the task allocation algorithm for a distributed test facility (DTF), which aims to assemble geo-distributed cyber (software) and physical (hardware in the loop components into a prototype cyber-physical system (CPS). This allows low cost testing on an early conceptual prototype (ECP) of the ultimate CPS (UCPS) to be developed. The DTF provides an instrumentation interface for carrying out reliability experiments remotely such as fault propagation analysis and in-situ testing of hardware and software components in a simulated environment. Unfortunately, the geo-distribution introduces an overhead that is not inherent to the UCPS, i.e. a significant time delay in communication that threatens the stability of the ECP and is not an appropriate representation of the behavior of the UCPS. This can be mitigated by implementing a task allocation algorithm to find a suitable configuration and assign the software components to appropriate computational locations, dynamically. This would allow the ECP to operate more efficiently with less probability of being unstable due to the delays introduced by geo-distribution. The task allocation algorithm proposed in this work uses a Monte Carlo approach along with Dynamic Programming to identify the optimal network configuration to keep the time delays to a minimum.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Task allocation in geo-distributed cyber-physical systems - 256

This paper studies the task allocation algorithm for a distributed test facility (DTF), which aims to assemble geo-distributed cyber (software) and physical (hardware in the loop) components into a prototype cyber-physical system (CPS). This allows low cost testing on an early conceptual prototype (ECP) of the ultimate CPS (UCPS) to be developed. The DTF provides an instrumentation interface for carrying out reliability experiments remotely such as fault propagation analysis and in-situ testing of hardware and software components in a simulated environment. Unfortunately, the geo-distribution introduces an overhead that is not inherent to the UCPS, i.e. a significant time delay in communication that threatens the stability of the ECP and is not an appropriate representation of the behavior of the UCPS. This can be mitigated by implementing a task allocation algorithm to find a suitable configuration and assign the software components to appropriate computational locations, dynamically. This would allow the ECP to operate more efficiently with less probability of being unstable due to the delays introduced by geo-distribution. The task allocation algorithm proposed in this work uses a Monte Carlo approach along with Dynamic Programming to identify the optimal network configuration to keep the time delays to a minimum. (authors)

97 MATHEMATICS AND COMPUTING↗

ExTreeM: Scalable Augmented Merge Tree Computation via Extremum Graphs

Over the last decade merge trees have been proven to support a plethora of visualization and analysis tasks since they effectively abstract complex datasets. Here, this paper describes the ExTreeM-Algorithm: A scalable algorithm for the computation of merge trees via extremum graphs. The core idea of ExTreeM is to first derive the extremum graph G of an input scalar field f defined on a cell complex K, and subsequently compute the unaugmented merge tree of f on G instead of K; which are equivalent. Any merge tree algorithm can be carried out significantly faster on G, since K in general contains substantially more cells than G. To further speed up computation, ExTreeM includes a tailored procedure to derive merge trees of extremum graphs. The computation of the fully augmented merge tree, i.e., a merge tree domain segmentation of K, can then be performed in an optional post-processing step. All steps of ExTreeM consist of procedures with high parallel efficiency, and we provide a formal proof of its correctness. Our experiments, performed on publicly available datasets, report a speedup of up to one order of magnitude over the state-of-the-art algorithms included in the TTK and VTK-m software libraries, while also requiring significantly less memory and exhibiting excellent scaling behavior.

97 MATHEMATICS AND COMPUTING↗

Historical Aerospace Software Errors Categorized to Influence Fault Tolerance

Since the first use of computers in space and aircraft, software errors have occurred. These errors can manifest as loss-of-life or less catastrophically. As the demand for automation increases, software in mission or safety-critical systems should be designed to be tolerant to the most likely software faults. This paper categorizes a set of 55 historic aerospace software error incidents from 1962 to 2023 to determine trends of how and where automation is most likely to fail, behaving unexpectedly. A distinction between software producing unexpected (erroneous) output versus no output (failsilent) is introduced. Of the historical incidents analyzed, 85% were from software producing wrong output rather than simply stopping. Rebooting was found to be ineffective to clear erroneous behavior, and not reliable to recover from silent failures. Error origin was within the code/logic itself in 58% of cases, 16% from configurable data, 15% from unexpected sensor input, and 11% from command/operator input. A substantial forty percent (40%) of unexpected software behavior was indicated by the absence of code, arising from unanticipated situations and missing requirements, and 16% of incidents were subjectively deemed “unknown-unknowns”. No incidents were found to be the result of programming language, compiler, tool, or operating system; and only sixteen percent (16%) of all incidents were considered errors traditional computer science/programming in nature. These findings indicate that for fault tolerance, erroneous automation behavior must be a primary consideration especially at critical moments, and reboot recoverability may not be viable. Special care should be taken to validate configurable data and commands prior to use. “Test-like-you-fly”, including hardware-in-the-loop combined with robust off-nominal testing should be used to uncover missing logic arising from unanticipated situations not covered by requirements alone. This study uniquely focuses on manifestations of unexpected flight software behavior, independent of ultimate root cause. We characterize software error behavior and origin to improve software design, test, and operations for resilience to the most common manifestations, and provide a rich dataset for further study.

Aerospace↗

Computer-aided operations engineering with integrated models of systems and operations

CONFIG 3 is a prototype software tool that supports integrated conceptual design evaluation from early in the product life cycle, by supporting isolated or integrated modeling, simulation, and analysis of the function, structure, behavior, failures and operation of system designs. Integration and reuse of models is supported in an object-oriented environment providing capabilities for graph analysis and discrete event simulation. Integration is supported among diverse modeling approaches (component view, configuration or flow path view, and procedure view) and diverse simulation and analysis approaches. Support is provided for integrated engineering in diverse design domains, including mechanical and electro-mechanical systems, distributed computer systems, and chemical processing and transport systems. CONFIG supports abstracted qualitative and symbolic modeling, for early conceptual design. System models are component structure models with operating modes, with embedded time-related behavior models. CONFIG supports failure modeling and modeling of state or configuration changes that result in dynamic changes in dependencies among components. Operations and procedure models are activity structure models that interact with system models. CONFIG is designed to support evaluation of system operability, diagnosability and fault tolerance, and analysis of the development of system effects of problems over time, including faults, failures, and procedural or environmental difficulties.

Malin, Jane T.↗

Report on the ASCR Workshop on Modeling and Simulation of Exascale Systems and Applications

In the last few years, numerous studies commissioned by the Department of Energy (DOE), the Defense Advanced Research Projects Agency (DARPA), and others have examined the challenges that will have to be overcome for computational science to achieve exascale, a two order-of-magnitude increase in capability beyond what is possible today. Exponential growth in the number of devices (Moore’s Law) is expected to continue unabated, but the end of Dennard scaling, and hence the growth in performance of individual processors, has led to exponential growth in concurrency. Power consumption has also grown to the point where the cost of the electrical power for systems threatens to exceed the cost of acquiring them. Ever-shrinking devices, and the growth in their number, are expected to increase the rate of soft, or transient, errors such that applications will no longer be able to assume correct behavior of the underlying machine. Adapting to such systems will require new mathematical algorithms that minimize synchronization and data movement, and a new generation of scientific software. Rather than addressing these issues in isolation, a new process of “Co-Design” is being pursued in which application and computer scientists work toward the common goal of an exascale ecosystem of systems and applications. Modeling and simulation (ModSim) is a critical part of this process. It enables scientists and engineers to analyze future algorithms, applications, and computing systems, long before they are realized, and make the necessary design decisions such that exascale science is broadly achieved. Later, when exascale applications and systems are realized, ModSim technology will enable us to understand their behavior, debugging and optimizing them. Given the increasing importance of modeling and simulation, a workshop was organized by DOE/ASCR to assess the current state of the art and to identify research challenges that must be overcome in this field. Fifty experts, representing academia, industry, and government, participated in the workshop, and others contributed both beforehand and afterwards. This report summarizes their findings.

97 MATHEMATICS AND COMPUTING↗

Report on the ASCR Workshop on Modeling and Simulation of Exascale Systems and Applications

In the last few years, numerous studies commissioned by the Department of Energy (DOE), the Defense Advanced Research Projects Agency (DARPA), and others have examined the challenges that will have to be overcome for computational science to achieve exascale, a two order-of-magnitude increase in capability beyond what is possible today. Exponential growth in the number of devices (Moore's Law) is expected to continue unabated, but the end of Dennard scaling, and hence the growth in performance of individual processors, has led to exponential growth in concurrency. Power consumption has also grown to the point where the cost of the electrical power for systems threatens to exceed the cost of acquiring them. Ever-shrinking devices, and the growth in their number, are expected to increase the rate of soft, or transient, errors such that applications will no longer be able to assume correct behavior of the underlying machine. Adapting to such systems will require new mathematical algorithms that minimize synchronization and data movement, and a new generation of scientific software. Rather than addressing these issues in isolation, a new process of "Co-Design" is being pursued in which application and computer scientists work toward the common goal of an exascale ecosystem of systems and applications. Modeling and simulation (ModSim) is a critical part of this process. It enables scientists and engineers to analyze future algorithms, applications, and computing systems, long before they are realized, and make the necessary design decisions such that exascale science is broadly achieved. Later, when exascale applications and systems are realized, ModSim technology will enable us to understand their behavior, debugging and optimizing them. Given the increasing importance of modeling and simulation, a workshop was organized by DOE/ASCR to assess the current state of the art and to identify research challenges that must be overcome in this field. Fifty experts, representing academia, industry, and government, participated in the workshop, and others contributed both beforehand and afterwards. This report summarizes their findings.

97 MATHEMATICS AND COMPUTING↗

The SkyView Data Model: Handling Heterogeneous Data Using Dynamic Software

The SkyView Virtual Telescope allows users to query over 75 distinct datasets of astronomical imagery including more than 190 distinct surveys. These holdings are extraordinarily diverse ranging over more than 15 orders of magnitude in frequency and5 orders of magnitude in resolution. To accommodate supporting these data, SkyView has developed a simple data model for surveys. Nor surprisingly, given the diverse origins of the datasets included, some surveys do not easily fit within this model. The conventional approach to dealing with such outliers is to build a layer on top of the actual data which more faithfully adheres to the data model. With SkyView we have used a somewhat alternative approach. We allow the data model to define new behaviors in the SkyView code itself either by customizing the use of existing capabilities or pointing to new classes that have non-standard behavior. This approach is feasible since in modern computer languages the code that is run can be selected dynamically with new classes completely overriding traditional behavior. This paper describes this approach and considers how it may become more useful as our software structures become increasingly dynamically linked.

Thomas McGlynn↗

Data analysis and modeling pipelines for controlled networked social science experiments

There is large interest in networked social science experiments for understanding human behavior at-scale. Significant effort is required to perform data analytics on experimental outputs and for computational modeling of custom experiments. Moreover, experiments and modeling are often performed in a cycle, enabling iterative experimental refinement and data modeling to uncover interesting insights and to generate/refute hypotheses about social behaviors. The current practice for social analysts is to develop tailor-made computer programs and analytical scripts for experiments and modeling. This often leads to inefficiencies and duplication of effort. In this work, we propose a pipeline framework to take a significant step towards overcoming these challenges. Our contribution is to describe the design and implementation of a software system to automate many of the steps involved in analyzing social science experimental data, building models to capture the behavior of human subjects, and providing data to test hypotheses. The proposed pipeline framework consists of formal models, formal algorithms, and theoretical models as the basis for the design and implementation. We propose a formal data model, such that if an experiment can be described in terms of this model, then our pipeline software can be used to analyze data efficiently. The merits of the proposed pipeline framework is elaborated by several case studies of networked social science experiments.

97 MATHEMATICS AND COMPUTING↗

Performance Debugging and Tuning of Flash-X with Data Analysis Tools

State-of-the-art multiphysics simulations running on large scale leadership computing platforms have many variables contributing to their performance and scaling behavior. We recently encountered an interesting performance anomaly in Flash-X, a multiphysics multicomponent simulation software, when characterizing its performance behavior on several large-scale HPC platforms. The anomaly was tracked down to the interaction between the use of dynamic allocation of scratch data and data locality in the cache hierarchy. In this paper we present the details of unexpected performance variability of Flash-X, its extensive analysis using the performance measurement tool TAU to collect the data and Python data analysis libraries to explore the data, and our insights from this experience. In this process, we discovered and removed or mitigated two additional performance limiting bottlenecks for performance tuning.

Huck, Kevin↗

Wild Fire Computer Model Helps Firefighters

A high-tech computer model called HIGRAD/FIRETEC, the cornerstone of a collaborative effort between U.S. Forest Service Rocky Mountain Research Station and Los Alamos National Laboratory, provides insights that are essential for front-line fire fighters. The science team is looking into levels of bark beetle-induced conditions that lead to drastic changes in fire behavior and how variable or erratic the behavior is likely to be.

54 ENVIRONMENTAL SCIENCES↗

Virtual Observation System for Earth System Model: An Application to ACME Land Model Simulations

Investigating and evaluating physical-chemical-biological processes within an Earth system model (EMS) can be very challenging due to the complexity of both model design and software implementation. A virtual observation system (VOS) is presented to enable interactive observation of these processes during system simulation. Based on advance computing technologies, such as compiler-based software analysis, automatic code instrumentation, and high-performance data transport, the VOS provides run-time observation capability, in-situ data analytics for Earth system model simulation, model behavior adjustment opportunities through simulation steering. A VOS for a terrestrial land model simulation within the Accelerated Climate Modeling for Energy model is also presented to demonstrate the implementation details and system innovations.

58 GEOSCIENCES↗

Beam rider for an Articulated Robot Manipulator (ARM) accurate positioning of long flexible manipulators

Laser beam positioning and beam rider modules were incorporated into the long hollow flexible segment of an articulated robot manipulator (ARM). Using a single laser beam, the system determined the position of the distal ARM endtip, with millimetric precision, in six degrees of freedom, at distances of up to 10 meters. Preliminary designs, using space rated technology for the critical systems, of a two segmented physical ARM, with a single and a dual degree of freedom articulation, were developed, prototyped, and tested. To control the positioning of the physical ARM, an indirect adaptive controller, which used the mismatch between the position of the laser beam under static and dynamic conditions, was devised. To predict the behavior of the system and test the concept, a computer simulation model was constructed. A hierarchical artificially intelligent real time ADA operating system program structure was created. The software was designed for implementation on a dedicated VME bus based Intel 80386 administered parallel processing multi-tasking computer system.

Malachowski, M. J.↗

An Axial-Torsional, Thermomechanical Fatigue Testing Technique

A technique for conducting strain-controlled, thermomechanical, axial-torsional fatigue tests on thin-walled tubular specimens was developed. Three waveforms of loading, namely, the axial strain waveform, the engineering shear strain waveform, and the temperature waveform were required in these tests. The phasing relationships between the mechanical strain waveforms and the temperature and axial strain waveforms were used to define a set of four axial-torsional, thermomechanical fatigue (AT-TMF) tests. Real-time test control (3 channels) and data acquisition (a minimum of 7 channels) were performed with a software program written in C language and executed on a personal computer. The AT-TMF testing technique was used to investigate the axial-torsional thermomechanical fatigue behavior of a cobalt-base superalloy, Haynes 188. The maximum and minimum temperatures selected for the AT-TMF tests were 760 and 316 C, respectively. Details of the testing system, calibration of the dynamic temperature profile of the thin-walled tubular specimen, thermal strain compensation technique, and test control and data acquisition schemes, are reported. The isothermal, axial, torsional, and in- and out-of-phase axial-torsional fatigue behaviors of Haynes 188 at 316 and 760 C were characterized in previous investigations. The cyclic deformation and fatigue behaviors of Haynes 188 in AT-TMF tests are compared to the previously reported isothermal axial-torsional behavior of this superalloy at the maximum and minimum temperatures.

Kalluri, Sreeramesh↗