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NASA NTRS1985

Study of application of space telescope science operations software for SIRTF use

The design and development of the Space Telescope Science Operations Ground System (ST SOGS) was evaluated to compile a history of lessons learned that would benefit NASA's Space Infrared Telescope Facility (SIRTF). Forty-nine specific recommendations resulted and were categorized as follows: (1) requirements: a discussion of the content, timeliness and proper allocation of the system and segment requirements and the resulting impact on SOGS development; (2) science instruments: a consideration of the impact of the Science Instrument design and data streams on SOGS software; and (3) contract phasing: an analysis of the impact of beginning the various ST program segments at different times. Approximately half of the software design and source code might be useable for SIRTF. Transportability of this software requires, at minimum, a compatible DEC VAX-based architecture and VMS operating system, system support software similar to that developed for SOGS, and continued evolution of the SIRTF operations concept and requirements such that they remain compatible with ST SOGS operation.

Dignam, F.↗

DOE OSTI2022

Simulation of the spatial shift in detector response for polarized protons within a calorimeter

Measurement of the helicity dependent elastic electron-proton scattering cross section provides a key means of investigating parity violation within the proton. However, such measurements exhibit potential instrumental effects associated with the detection of polarized recoiled protons. In particular, spin-orbit interactions within a massive detector induce a systematic spatial shift in the detector signal. In this study, we determine the size of this shift using the Geant4 simulation toolkit. For a typical hadron calorimeter, we found a polarization dependent shift on the order of 0.01-0.1 mm, multiple orders of magnitude smaller than the typical spatial resolution seen in hadronic calorimeters. Additionally, we provide the custom modifications required of the Geant4 source code to implement the quasi-elastic scattering of polarized protons incident on nuclei in the detector. The modifications are readily extendable to generic matter sources, and can be used for the study of additional spin dependent observables in Geant4.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

NASA NTRS1974

Tree encoding of Gaussian sources

Tree codes are known to be capable of performing arbitrarily close to the rate-distortion function for any memoryless source and single-letter fidelity criterion. Tree coding and tree search strategies are investigated for the discrete-time memoryless Gaussian source encoded for a signal-power-to-mean-squared-error ratio of about 30 dB (about 5 binary digits per source output). Also, a theoretical lower bound on average search effort is derived. Two code search strategies (the Viterbi algorithm and the stack algorithm) were simulated in assembly language on a large digital computer. After suitable modifications, both strategies yielded encoding with a signal-to-distortion ratio about 1 dB below the limit set by the rate-distortion function. Although this performance is better than that of any previously known instrumentable scheme, it unfortunately requires search computation of the order of 100,000 machine cycles per source output encoded.

Dick, R. J.↗

DOE OSTI2015

A novel approach to correct the coded aperture misalignment for fast neutron imaging

Aperture alignment is crucial for the diagnosis of neutron imaging because it has significant impact on the coding imaging and the understanding of the neutron source. In our previous studies on the neutron imaging system with coded aperture for large field of view, “residual watermark,” certain extra information that overlies reconstructed image and has nothing to do with the source is discovered if the peak normalization is employed in genetic algorithms (GA) to reconstruct the source image. Some studies on basic properties of residual watermark indicate that the residual watermark can characterize coded aperture and can thus be used to determine the location of coded aperture relative to the system axis. In this paper, we have further analyzed the essential conditions for the existence of residual watermark and the requirements of the reconstruction algorithm for the emergence of residual watermark. A gamma coded imaging experiment has been performed to verify the existence of residual watermark. Based on the residual watermark, a correction method for the aperture misalignment has been studied. A multiple linear regression model of the position of coded aperture axis, the position of residual watermark center, and the gray barycenter of neutron source with twenty training samples has been set up. Using the regression model and verification samples, we have found the position of the coded aperture axis relative to the system axis with an accuracy of approximately 20 μm. Conclusively, a novel approach has been established to correct the coded aperture misalignment for fast neutron coded imaging.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2020

Hindsight logging for model training

In modern Machine Learning, model training is an iterative, experimental process that can consume enormous computation resources and developer time. To aid in that process, experienced model developers log and visualize program variables during training runs. Exhaustive logging of all variables is infeasible, so developers are left to choose between slowing down training via extensive conservative logging, or letting training run fast via minimalist optimistic logging that may omit key information. As a compromise, optimistic logging can be accompanied by program checkpoints; this allows developers to add log statements post-hoc, and "replay" desired log statements from checkpoint---a process we refer to as hindsight logging. Unfortunately, hindsight logging raises tricky problems in data management and software engineering. Done poorly, hindsight logging can waste resources and generate technical debt embodied in multiple variants of training code. In this paper, we present methodologies for efficient and effective logging practices for model training, with a focus on techniques for hindsight logging. Our goal is for experienced model developers to learn and adopt these practices. To make this easier, we provide an open-source suite of tools for Fast Low-Overhead Recovery (flor) that embodies our design across three tasks: (i) efficient background logging in Python, (ii) adaptive periodic checkpointing, and (iii) an instrumentation library that codifies hindsight logging for efficient and automatic record-replay of model-training. Model developers can use each flor tool separately as they see fit, or they can use flor in hands-free mode, entrusting it to instrument their code end-to-end for efficient record-replay. Our solutions leverage techniques from physiological transaction logs and recovery in database systems. Evaluations on modern ML benchmarks demonstrate that flor can produce fast checkpointing with small user-specifiable overheads (e.g. 7%), and still provide hindsight log replay times orders of magnitude faster than restarting training from scratch.

Computer Science↗

DOE OSTI2023

BatAnalysis - A Comprehensive Python Pipeline for Swift BAT Survey Analysis

The Swift Burst Alert Telescope (BAT) is a coded-aperture gamma-ray instrument with a large field of view that primarily operates in survey mode when it is not triggering on transient events. The survey data consist of 80- channel detector plane histograms that accumulate photon counts over periods of at least 5 minutes. These histograms are processed on the ground and are used to produce the survey data set between 14 and 195 keV. Survey data comprise >90% of all BAT data by volume and allow for the tracking of long-term light curves and spectral properties of cataloged and uncataloged hard X-ray sources. Until now, the survey data set has not been used to its full potential due to the complexity associated with its analysis and the lack of easily usable pipelines. Here, we introduce the BatAnalysis Python package, a wrapper for HEASoftpy, which provides a modern, opensource pipeline to process and analyze BAT survey data. BatAnalysis allows members of the community to use BAT survey data in more advanced analyses of astrophysical sources, including pulsars, pulsar wind nebula, active galactic nuclei, and other known/unknown transient events that may be detected in the hard X-ray band. We outline the steps taken by the Python code and exemplify its usefulness and accuracy by analyzing survey data of the Crab Nebula, NGC 2992, and a previously uncataloged MAXI transient. The BatAnalysis package allows for ~18 yr of BAT survey data to be used in a systematic way to study a large variety of astrophysical sources.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2018

On-board Radiation Sensor and Low-Altitude Contour Mapping of Radiation Fields using UAS Swarm - 18239

This paper addresses the design of light weight radiation sensors for the small-scale unmanned aerial system (UAS), and its implementation for low-altitude radiation source localization and contour mapping. The compact, high-resolution gamma-ray CZT sensors were integrated to UAS platforms as plug-and-play components using Robot Operation System (ROS). In this work, the UAS swarm consists of three platforms positioned in circular formation. The onboard data analysis provides time and position stamped intensities of gamma-ray peaks for each UAS-based sensor that are used as the input data for the swarm flight control algorithm. Each UAS measures radiation simultaneously for estimating gradient of radiation to compute a bulk heading angle of the swarm for contour mapping, which can provide relatively precise boundary of the safe area for potential human exploration. The UAS radiation sensors allow measurements from just few meters up to hundreds of meters thus filling the gap between land- and helicopter- based platforms. The swarm of UAS has advantages over a single agent based approach in detecting radiative sources and effectively mapping the area. The proposed method can locate sources of radiation as well as mapping the contaminated area for enhancing situation awareness capabilities for first responders. Computer simulation is presented for UAS swarm based source localization and contour mapping in the simulated radiation fields created by the MCNP code. Selected key gradient estimation and contour mapping algorithms are validated experimentally with small scale multicopter UAS in the indoor flight test bed. (authors)

42 ENGINEERING↗

DOE OSTI2018

SISTec: Mathematical Calibration of Large Clearance Monitors - 18265

One major path for clearance of large amount of waste arising from the decommission of nuclear power plants is based on measurement with large clearance monitors (also known as free release measurement facilities). These devices utilize multi-detector plastic scintillator arrays (large clearance monitors can consist of up to 24 plastic scintillators) to offer both, extremely low minimum detectable activities (MDA) and short measurement times for waste packages weighing up to one metric ton. However, a major problem with these devices is to obtain nuclide specific efficiencies, especially for geometrically complex large waste packages. Normal procedure for estimating the efficiency is to device dummy waste packages and attach point sources with well-known activities to unfavourable positions in these packages. In accordance with this procedure, calibration factors can be derived in a radiological conservative way. Devising such test dummies is not always possible and the procedure is prone to generating large measurement uncertainties. In this publication, we propose a new method to derive calibration factors by means of the Los Alamos National Laboratory (LANL) simulation tool Monte Carlo N-Particle (MCNP) and a statistical-phenomenological model for the detector characterization. In a multi-step approach, first the detector response for a distribution of activity in a waste package is calculated and subsequently the detectors are mathematically characterized. Applying state of the art statistical and optimizing procedures, parameters for the detector response are derived in a self-consistent way. This also allows to rigorously propagate the uncertainties to the final calculated calibration factors according to the Guide to the Expression of Uncertainty in Measurement (GUM supplement 1). To validate the derived parameters for the detector characterization a minimally invasive experimental setup was devised and installed into the large clearance monitor. It consisted of an aluminum swivel arm which could position point sources to the relevant coordinates. The so collected measurement data not only allowed to investigate the precision of the calculated calibration factors, but also to probe the location of concentrated activity sources in the waste package. Furthermore, data on measurements with dummy waste packages were collected to test the reproducibility of well-known calibration factors. We present the software tool SIStec, which will provide an intuitive user-interface to generate and simulate waste package models and execute the above-mentioned method. Using SIStec, different scenarios for the distribution of activity in the waste package can be probed. This will also allow to optimize the clearance process on various levels. For example, measurement time for pre-measurements can be reduced in exchange for unfavourable calibration factors, which would still allow to meet the regulator limits for clearance. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

DOE OSTI2016

Comparison of Martian meteorites with earth composition: Study of effective atomic numbers in the energy range 1 keV-100 GeV

Effective atomic (Z{sub eff}) and electron numbers (N{sub eff}) for 24 Martian meteorites have been determined in the energy range from 1 keV to 100 GeV and also for sixteen significant energies of commonly used radioactive sources. The values of Z{sub eff} and N{sub eff} for all sample were obtained from the DirectZeff program. The obtained results for Martian meteorites have been compared with the results for Earth composition and similarities or differences also evaluated.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

NASA NTRS1992

Instruction manual for UTEP weld gas hydrogen detector

The instrument described in this manual was developed at the University of Texas at El Paso under contract from the National Aeronautics and Space Administration Marshall Space Flight Center. The instrument has been used to detect hydrogen in the shielding gas of Variable Polarity Plasma Arc (VPPA) welds at concentrations of less than 100 ppm. The instrument makes measurements in real time during the welding operation and provides the operator with an easily readable graphic display of the present level of hydrogen in the arc as well as the level of hydrogen over the past approximately five minutes. In this way the welder can not only tell if the present level of hydrogen is excessive, but can see what changes in weld parameters have done to the level of hydrogen. The welder can set the level of hydrogen that is considered critical and the instrument display will indicate when that level has been exceeded. All detection is from the torch side. All needed equipment is supplied by the developer except for an IBM PC compatible computer which must be supplied by the user. Source code is supplied in this manual so that the user can modify the control program as desired.

Mcclure, John↗

NASA NTRS1994

Versatile Dual-Channel Waveform Generator

Programmable waveform generator synthesizes two independent waveforms simultaneously at frequencies up to 250 MHz. Can be in phase or out of phase with each other. Use of commercial integrated circuits helps keep cost low. Operation governed by BASIC source code enabling any user equipped with suitable personal computer to specify waveforms. User can modify source code to satisfy special needs. Other applications include simulation of Doppler waveforms for radar, and of video signals for testing color displays and computer monitors. With eventual substitution of gallium arsenide integrated circuits for its present silicon integrated circuits, instrument able to generate waveforms with 14-bit precision and sample rates as high as 2 GHz.

Staples, Edward J.↗

NASA NTRS2011

A Tutorial on Interfacing the Object Management Group (OMG) Data Distribution Service (DDS) with LabView

This tutorial will explain the concepts and steps for interfacing a National Instruments LabView virtual instrument (VI) running on a Windows platform with another computer via the Object Management Group (OMG) Data Distribution Service (DDS) as implemented by the Twin Oaks Computing CoreDX. This paper is for educational purposes only and therefore, the referenced source code will be simplistic and void of all error checking. Implementation will be accomplished using the C programming language.

Smith, Kevin↗

DOE OSTI2017

Cyber security using multi-threaded architecture data diode at the NBSR - 114

Ongoing upgrades for the control room of the National Bureau of Standards Reactor (NBSR) located at the National Institute of Standards and Technology (NIST) require the ability to collect sensor data from the secured reactor network and transfer to the outside network for trend analysis, while maintaining the security of the reactor network. To accomplish this, a data diode was created to provide a physical barrier that prevents any outside data from reaching the secured reactor network. The hardware of the data diode consists of two embedded computers, running Unix based operating systems, connected by three DB-9 serial cables. The serial cables have been modified so that only two wires, a ground and a transmission line, provide connection between the computers. The data diode relies on a multi-threaded architecture to collect and simultaneously transfer data over three serial connections. A software program, implemented in Java, has been written to request data from the digital recorders installed to monitor the NBSR process instrumentation and transfer that data across the serial connections. The data diode can collect over 1200 data points from multiple digital recorders each second. The collected data can then be stored in a relational database for later analysis. The source codes for the software are available open source on GitHub. (authors)

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

NASA NTRS1990

The Nuclear Astrophysics Explorer

The Nuclear Astrophysics Explorer (NAE) is a concept for a possible future NASA Explorer mission which would obtain high resolution, E/Delta E about 500, observations of gamma-ray lines in order to study many fundamental problems in astrophysics. It operates from 15 keV to 10 MeV with a 3-sigma sensitivity of about 3 x 10 to the -6th ph/sq cm-s in a 10 to the 6th s observation. This is 100 times below the presently known gamma-ray line fluxes. The NAE uses a heavily shielded array of nine cooled Ge detectors in a very low background configuration. Its 10-deg field of view contains a versatile coded mask system which provides 2D imaging with 4-deg resolution, 1D imaging with 2-deg resolution and efficient measurements of emission from diffuse and point sources. The late 1990s is the earliest the NAE mission could begin. The scientific motivation, instrument concept, mission concept and expected results, and status and plans for the NAE are presented.

Matteson, James L.↗

NASA NTRS1994

Performance Measurement, Visualization and Modeling of Parallel and Distributed Programs

This paper presents a methodology for debugging the performance of message-passing programs on both tightly coupled and loosely coupled distributed-memory machines. The AIMS (Automated Instrumentation and Monitoring System) toolkit, a suite of software tools for measurement and analysis of performance, is introduced and its application illustrated using several benchmark programs drawn from the field of computational fluid dynamics. AIMS includes (i) Xinstrument, a powerful source-code instrumentor, which supports both Fortran77 and C as well as a number of different message-passing libraries including Intel's NX Thinking Machines' CMMD, and PVM; (ii) Monitor, a library of timestamping and trace -collection routines that run on supercomputers (such as Intel's iPSC/860, Delta, and Paragon and Thinking Machines' CM5) as well as on networks of workstations (including Convex Cluster and SparcStations connected by a LAN); (iii) Visualization Kernel, a trace-animation facility that supports source-code clickback, simultaneous visualization of computation and communication patterns, as well as analysis of data movements; (iv) Statistics Kernel, an advanced profiling facility, that associates a variety of performance data with various syntactic components of a parallel program; (v) Index Kernel, a diagnostic tool that helps pinpoint performance bottlenecks through the use of abstract indices; (vi) Modeling Kernel, a facility for automated modeling of message-passing programs that supports both simulation -based and analytical approaches to performance prediction and scalability analysis; (vii) Intrusion Compensator, a utility for recovering true performance from observed performance by removing the overheads of monitoring and their effects on the communication pattern of the program; and (viii) Compatibility Tools, that convert AIMS-generated traces into formats used by other performance-visualization tools, such as ParaGraph, Pablo, and certain AVS/Explorer modules.

Yan, Jerry C.↗

DOE OSTI2020

Ultra-Fast Electron Microscopic Imaging of Single Molecules With a Direct Electron Detection Camera and Noise Reduction

Time-resolved imaging of molecules and materials made of light elements is an emerging field of transmission electron microscopy (TEM), and the recent development of direct electron detection cameras, capable of taking as many as 1,600 fps, has potentially broadened the scope of the time-resolved TEM imaging in chemistry and nanotechnology. However, such a high frame rate reduces electron dose per frame, lowers the signal-to-noise ratio (SNR), and renders the molecular images practically invisible. Here, we examined image noise reduction to take the best advantage of fast cameras and concluded that the Chambolle total variation denoising algorithm is the method of choice, as illustrated for imaging of a molecule in the 1D hollow space of a carbon nanotube with ~1 ms time resolution. Through the systematic comparison of the performance of multiple denoising algorithms, we found that the Chambolle algorithm improves the SNR by more than an order of magnitude when applied to TEM images taken at a low electron dose as required for imaging at around 1,000 fps. Open-source code and a standalone application to apply Chambolle denoising to TEM images and video frames are available for download.

47 OTHER INSTRUMENTATION↗

DOE OSTI2021

Deep Learning Segmentation of Complex Features in Atomic-Resolution Phase-Contrast Transmission Electron Microscopy Images

Phase-contrast transmission electron microscopy (TEM) is a powerful tool for imaging the local atomic structure of materials. TEM has been used heavily in studies of defect structures of two-dimensional materials such as monolayer graphene due to its high dose efficiency. However, phase-contrast imaging can produce complex nonlinear contrast, even for weakly scattering samples. It is, therefore, difficult to develop fully automated analysis routines for phase-contrast TEM studies using conventional image processing tools. For automated analysis of large sample regions of graphene, one of the key problems is segmentation between the structure of interest and unwanted structures such as surface contaminant layers. In this study, we compare the performance of a conventional Bragg filtering method with a deep learning routine based on the U-Net architecture. We show that the deep learning method is more general, simpler to apply in practice, and produces more accurate and robust results than the conventional algorithm. We provide easily adaptable source code for all results in this paper and discuss potential applications for deep learning in fully automated TEM image analysis.

47 OTHER INSTRUMENTATION↗

DOE OSTI2017

OpenMSI Arrayed Analysis Toolkit: Analyzing Spatially Defined Samples Using Mass Spectrometry Imaging

Mass spectrometry imaging (MSI) has primarily been applied in localizing biomolecules within biological matrices. Although well-suited, the application of MSI for comparing thousands of spatially defined spotted samples has been limited. One reason for this is a lack of suitable and accessible data processing tools for the analysis of large arrayed MSI sample sets. In this paper, the OpenMSI Arrayed Analysis Toolkit (OMAAT) is a software package that addresses the challenges of analyzing spatially defined samples in MSI data sets. OMAAT is written in Python and is integrated with OpenMSI (http://openmsi.nersc.gov), a platform for storing, sharing, and analyzing MSI data. By using a web-based python notebook (Jupyter), OMAAT is accessible to anyone without programming experience yet allows experienced users to leverage all features. OMAAT was evaluated by analyzing an MSI data set of a high-throughput glycoside hydrolase activity screen comprising 384 samples arrayed onto a NIMS surface at a 450 μm spacing, decreasing analysis time >100-fold while maintaining robust spot-finding. The utility of OMAAT was demonstrated for screening metabolic activities of different sized soil particles, including hydrolysis of sugars, revealing a pattern of size dependent activities. Finally, these results introduce OMAAT as an effective toolkit for analyzing spatially defined samples in MSI. OMAAT runs on all major operating systems, and the source code can be obtained from the following GitHub repository: https://github.com/biorack/omaat.

47 OTHER INSTRUMENTATION↗