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At least 109 records · Page 6

Kinetics of template-directed pyrophosphate-linked dideoxyguanylate synthesis as a function of 2-MeImpdG and poly(C) concentration: insights into the mechanism

Aqueous solutions of deoxyguanosine 5'-monophosphate 2-methylimidazolide, 2-MeImpdG, yield primarily deoxyguanosine 5'-monophosphate, 5'dGMP, and pyrophosphate-linked dideoxyguanylate, dG5'ppdG, abbreviated G2p (see Chart 1). The initial rate of G2p formation, d[G2p]/dt in M h-1, determined at 23 degrees C, pH 7.8, 1.0 M NaCl and 0.2 M Mg2+ by timed high-performance liquid chromatography (HPLC) analysis, exhibits a second-order dependence on 2-MeImpdG concentration, [G]o, indicating a bimolecular mechanism of dimerization in the range 0.02 M < or = [G]o < or = 0.09 M. In the presence of polycytidylate, poly(C), G2p synthesis is accelerated and oligodeoxyguanylate products are formed by incorporation of 2-MeImpdG molecules. The kinetics of G2p formation as a function of both monomer and polymer concentration, expressed in C equivalents, were also determined under the above conditions and exhibited a complex behavior. Specifically, at a constant [poly(C)], values of d[G2p]/dt typically increased with [G]o with a parabolic upward curvature. At a constant [G]o, values of d[G2p]/dt increase with [poly(C)], but level off at the higher poly(C) concentrations. As [G]o increases this saturation occurs at a higher poly(C) concentration, a result opposite to expectation for a simple complexation of two reacting monomers with the catalyst prior to reaction. Nevertheless, these results are shown to be quantitatively consistent with a template-directed (TD) mechanism of dimerization where poly(C) acts as the template to bind 2-MeImpdG in a cooperative manner and lead, for the first time, to the formulation of principles that govern template-directed chemistry. Analysis of the kinetic data via a proposed TD cooperative model provides association constants for the affinity between polymer and monomer and the intrinsic reactivity of 2-MeImpdG toward pyrophosphate synthesis. To the best of our knowledge, poly(C)/2-MeImpdG is the first system that could serve as a textbook example of a TD reaction under conditions such that the template is fully saturated by monomers and under conditions that it is not.

NASA Discipline Exobiology↗

A survey of modal synthesis methods.

Several modal synthesis procedures for the dynamic analysis of largy composite structural systems are surveyed. The matrix formulation of the free-free modal synthesis procedures is presented. Also given are schematic flow charts of the analysis procedure used in three prominent methods. The advantages and disadvantages of several modal synthesis methods for different classes of structural problems are presented in order to enable the engineer to select the best procedure for his particular type of problem.

Hart, G. C.↗

Dynamic analysis of large structures by modal synthesis techniques.

Several criteria that may be used to evaluate the merits of some of the existing techniques for the dynamic analysis of large structures which involve division into substructures or components are examined. These techniques make use of component displacement modes to synthetize global systems of generalized coordinates and, for that reason, they have come to be known as modal synthesis or component mode methods. Two techniques have been found to be particularly useful - i.e., the modal synthesis method with fixed attachment modes, and the modal synthesis method with free attachment modes. These two methods are treated in detail, and general flow charts are presented for guidance in computer programming.

Hurty, W. C.↗

Multivariable system synthesis with step disturbance rejection

The primary objective of this paper is to present a constructive procedure for the synthesis of linear multivariable systems whose entire internal state and output are corrupted by unknown step disturbances. It is assumed that the dynamical behavior of the system is expressed in any one of three equivalent ways - i.e., the state space representation, the controllable and observable differential operator representation, and the transfer matrix representation. In terms of the transfer matrix representation, T(s), the synthesis procedure is shown to be capable of producing any stable, desired closed loop transfer matrix, Td(s), which can be expressed as the product of T(s) and any proper rational matrix, Tc(s), while simultaneously eliminating the steady-state effect of step disturbances at the output of the system. Furthermore, the synthesis scheme outlined employes only the known, directly measurable input and output signals.

Wolovich, W. A.↗

The prebiotic synthesis of oligonucleotides

This paper is primarily a review of recent developments in the abiotic synthesis of nucleotides, short chain oligonucleotides, and their mode of replication in solution. It also presents preliminary results from this laboratory on the prebiotic synthesis of thymidine oligodeoxynucleotides. A discussion, based on the physicochemical properties of RNA and DNA oligomers, relevant to the molecular evolution of these compounds leads to the tentative hypothesis that oligodeoxyribonucleotides of about 12 units may have been of sufficient length to initiate a self replicating coding system. Two models are suggested to account for the synthesis of high molecular weight oligomers using short chain templates and primers.

Oro, J.↗

Brain catechol synthesis - Control by brain tyrosine concentration

Brain catechol synthesis was estimated by measuring the rate at which brain dopa levels rose following decarboxylase inhibition. Dopa accumulation was accelerated by tyrosine administration, and decreased by treatments that lowered brain tyrosine concentrations (for example, intraperitoneal tryptophan, leucine, or parachlorophenylalanine). A low dose of phenylalanine elevated brain tyrosine without accelerating dopa synthesis. Our findings raise the possibility that nutritional and endocrine factors might influence brain catecholamine synthesis by controlling the availability of tyrosine.

Wurtman, R. J.↗

Experiences in using modal synthesis within project requirements

Modal synthesis methods were developed for use by engineers for cost-effective solutions of large structural dynamics problems. Different methods were proposed by various investigators based upon comparative solutions of relatively simple structures using different forms of displacement functions. The application of modal synthesis methods to a large complex structure in a project environment is described. The considerations include analysis, hardware interfaces, schedules, tests, resources, and other project requirements. Good technical results were obtained through the use of an integrated analysis/test modal synthesis on both substructures and systems.

Garba, J. A.↗

Synthesis of the antenna pattern for a radiating slot in a metal cylinder

The synthesis of a prescribed far-field pattern by means of a radiating slot in a perfectly conducting infinite circular cylinder is considered. The narrow circumferential slot and the infinite axial slot are studied in detail. In either case, the problem is to find the distribution of the electromagnetic field in the aperture that yields a radiation pattern that is the best mean-square approximation to a given pattern, under certain constraints. Various quality factors for cylindrical models are discussed, and a detailed comparison with the synthesis problem for a planar aperture is performed. It turns out that Rhodes' synthesis method has no equivalent in the cylindrical case, and that the best admissible mean-square approximation to a given pattern may be a very poor approximation in amplitude. However, an iteration scheme is developed in which the phase approximation is sacrificed for the sake of substantially improving the amplitude approximation. Numerical results based on such a scheme are displayed, for prescribed omnidirectional and sectoral patterns.

Einarsson, O.↗

Development of an automated multi-stage modal synthesis system for NASTRAN

A mode synthesis development to be scheduled in the NASTRAN multi-level substructuring system for general dynamics applications is described. The method combines the better features of several state of the art mode synthesis techniques, yet is general enough to provide for any arbitrary combination of boundary degrees of freedom and normal mode boundary conditions. Normal modes or complex eigenvectors may be used in the definition of a structure component which may be combined with other components of any type. Combination structures fabricated from component modes may be processed as normal substructures, including further multi-stage mode synthesis reductions. Included are discussions of the user control of the system and advantages in actual application.

Herting, D. N.↗

Low-speed single-element airfoil synthesis

The use of recently developed airfoil analysis/design computational tools to clarify, enrich and extend the existing experimental data base on low-speed, single element airfoils is demonstrated. A discussion of the problem of tailoring an airfoil for a specific application at its appropriate Reynolds number is presented. This problem is approached by use of inverse (or synthesis) techniques, wherein a desirable set of boundary layer characteristics, performance objectives, and constraints are specified, which then leads to derivation of a corresponding viscous flow pressure distribution. Examples are presented which demonstrate the synthesis approach, following presentation of some historical information and background data which motivate the basic synthesis process.

Mcmasters, J. H.↗

Synthesis of amino acyl adenylates using the tert-butoxycarbonyl protecting group

The synthesis of amino acyl adenylates using N-tert-butoxycarbonyl-protected amino acids is reported. Anhydrous solutions containing N-tert-butoxycarbonyl alanine, phenylalanine, and methionine were combined with the anhydrous mono (tri-n-octylammonium) salt of adenosine 5'-phosphate and the resultant amino acyl adenylates were characterized by means of elemental analysis, and infrared and proton NMR spectroscopy. Amino acyl adenylate yields of up to 60% were obtained with high purity at room temperatures. The reported synthesis is considered to represent a large improvement over previous methods due to the purity of the products, normal temperature requirements, and the stability of the starting compounds, which suggests its use in investigations of prebiotic oligo- and polypeptide synthesis.

Armstrong, D. W.↗

Multivariable synthesis with transfer functions

A transfer function design theory for multivariable control synthesis is highlighted. The use of unique transfer function matrices and two simple, basic relationships - a synthesis equation and a design equation - are presented and illustrated. This multivariable transfer function approach provides the designer with a capability to specify directly desired dynamic relationships between command variables and controlled or response variables. At the same time, insight and influence over response, simplifications, and internal stability is afforded by the method. A general, comprehensive multivariable synthesis capability is indicated including nonminmum phase and unstable plants. Gas turbine engine examples are used to illustrate the ideas and method.

Peczkowski, J. L.↗

The effects of cutting or of stretching skeletal muscle in vitro on the rates of protein synthesis and degradation

Skeletal muscle preparations using cut muscle fibers have often been used in studies of protein metabolism. The present paper reports an investigation of the effect of muscle cutting or stretching in vitro on the rates of protein synthesis and/or degradation. Protein synthesis and content, and ATP and phosphocreatine levels were monitored in soleus and extensor digitorum longus muscles from the rat with various extents of muscle fiber cuts and following stretching to about 120% the resting length. Rates of protein synthesis are found to be significantly lower and protein degradation higher in the cut muscles than in uncut controls, while ATP and phosphocreatine concentrations decreased. Stretched intact muscles, on the other hand, are observed to have higher concentrations of high-energy phosphates than unstretched muscles, while rates of protein degradation were not affected. Results thus demonstrate that the cutting of skeletal muscle fibers alters many aspects of muscle metabolism, and that moderate decreases in ATP concentration do not alter rates of protein concentration in intact muscles in vitro.

Seider, M. J.↗

Synthesis of phosphatidylcholine under possible primitive earth conditions

Using a primitive earth evaporating pond model, the synthesis of phosphatidylcholine was accomplished when a reaction mixture of choline chloride and disodium phosphatidate, in the presence of cyanamide and traces of acid, was evaporated and heated at temperatures ranging from 25 to 100 C for 7 hours. Optimum yields of about 15% were obtained at 80 C. Phosphatidylcholine was identified by chromatographic, chemical and enzymatic degradation methods. On enzymatic hydrolysis with phospholipase A2 and phospholipase C, lysophosphatidylcholine and phosphorylcholine were formed, respectively. Alkaline hydrolysis gave glycerophosphorylcholine. The synthesis of phosphatidylcholine as the major compound was accompanied by the formation of lysophosphatidylcholine in smaller amounts. Cyanamide was found to be essential for the formation of phosphatidylcholine, and only traces of HCl, of the order of that required to convert the disodium phosphatidate to free phosphatidic acid were found necessary for the synthesis. This work suggests that phosphatidylcholine, which is an essential component of most biological membranes, could have been synthesized on the primitive earth.

Rao, M.↗

Automatic hardware synthesis

The complexity of the circuit that can fit on an integrated circuit (IC) chip has reached the level of a million transistors with the advent of Very-Large-Scale Integration (VLSI). Several automatic synthesis systems have evolved that 'aid' the human designer in managing this complexity. This paper surveys such efforts. The synthesis is viewed as the process of transforming a high-level design specification into a lower level design specification that includes more structural details, leading to the physical design of the IC. The characteristics of ten automatic synthesis systems are summarized.

Shiva, S. G.↗

Interactive systems design and synthesis of future spacecraft concepts

An interactive systems design and synthesis is performed on future spacecraft concepts using the Interactive Design and Evaluation of Advanced spacecraft (IDEAS) computer-aided design and analysis system. The capabilities and advantages of the systems-oriented interactive computer-aided design and analysis system are described. The synthesis of both large antenna and space station concepts, and space station evolutionary growth is demonstrated. The IDEAS program provides the user with both an interactive graphics and an interactive computing capability which consists of over 40 multidisciplinary synthesis and analysis modules. Thus, the user can create, analyze and conduct parametric studies and modify Earth-orbiting spacecraft designs (space stations, large antennas or platforms, and technologically advanced spacecraft) at an interactive terminal with relative ease. The IDEAS approach is useful during the conceptual design phase of advanced space missions when a multiplicity of parameters and concepts must be analyzed and evaluated in a cost-effective and timely manner.

Wright, R. L.↗

Conceptual spacecraft systems design and synthesis

An interactive systems design and synthesis is performed on future spacecraft concepts using the Interactive Design and Evaluation of Advanced Systems (IDEAS) computer-aided design and analysis system. The capabilities and advantages of the systems-oriented interactive computer-aided design and analysis system are described. The synthesis of both large antenna and space station concepts, and space station evolutionary growth designs is demonstrated. The IDEAS program provides the user with both an interactive graphics and an interactive computing capability which consists of over 40 multidisciplinary synthesis and analysis modules. Thus, the user can create, analyze, and conduct parametric studies and modify earth-orbiting spacecraft designs (space stations, large antennas or platforms, and technologically advanced spacecraft) at an interactive terminal with relative ease. The IDEAS approach is useful during the conceptual design phase of advanced space missions when a multiplicity of parameters and concepts must be analyzed and evaluated in a cost-effective and timely manner.

Wright, R. L.↗

Study to determine potential flight applications and human factors design guidelines for voice recognition and synthesis systems

A study was conducted to determine potential commercial aircraft flight deck applications and implementation guidelines for voice recognition and synthesis. At first, a survey of voice recognition and synthesis technology was undertaken to develop a working knowledge base. Then, numerous potential aircraft and simulator flight deck voice applications were identified and each proposed application was rated on a number of criteria in order to achieve an overall payoff rating. The potential voice recognition applications fell into five general categories: programming, interrogation, data entry, switch and mode selection, and continuous/time-critical action control. The ratings of the first three categories showed the most promise of being beneficial to flight deck operations. Possible applications of voice synthesis systems were categorized as automatic or pilot selectable and many were rated as being potentially beneficial. In addition, voice system implementation guidelines and pertinent performance criteria are proposed. Finally, the findings of this study are compared with those made in a recent NASA study of a 1995 transport concept.

White, R. W.↗