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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 109 records · Page 6

Systematic Comparison of High-throughput Single-Cell and Single-Nucleus Transcriptomes during Cardiomyocyte Differentiation

A comprehensive reference map of all cell types in the human body is necessary for improving our understanding of fundamental biological processes and in diagnosing and treating disease. High-throughput single-cell RNA sequencing techniques have emerged as powerful tools to identify and characterize cell types in complex and heterogeneous tissues. However, extracting intact cells from tissues and organs is often technically challenging or impossible, for example in heart or brain tissue. Single-nucleus RNA sequencing provides an alternative way to obtain transcriptome profiles of such tissues. To systematically assess the differences between high-throughput single-cell and single-nuclei RNA-seq approaches, we compared Drop-seq and DroNc-seq, two microfluidic-based 3' RNA capture technologies that profile total cellular and nuclear RNA, respectively, during a time course experiment of human induced pluripotent stem cells (iPSCs) differentiating into cardiomyocytes. Clustering of timeseries transcriptomes from Drop-seq and DroNc-seq revealed six distinct cell types, five of which were found in both techniques. Furthermore, single-cell trajectories reconstructed from both techniques reproduced expected differentiation dynamics. We then applied DroNc-seq to postmortem heart tissue to test its performance on heterogeneous human tissue samples. Our data confirm that DroNcseq yields similar results to Drop-seq on matched samples and can be successfully used to generate reference maps for the human cell atlas.

59 BASIC BIOLOGICAL SCIENCES↗

Dynamics-Based Peptide–MHC Binding Optimization by a Convolutional Variational Autoencoder: A Use-Case Model for CASTELO

An unsolved challenge in the development of antigen-specific immunotherapies is determining the optimal antigens to target. Comprehension of antigen–major histocompatibility complex (MHC) binding is paramount toward achieving this goal. Here, we apply CASTELO, a combined machine learning-molecular dynamics (ML-MD) approach, to identify per-residue antigen binding contributions and then design novel antigens of increased MHC-II binding affinity for a type 1 diabetes-implicated system. We build upon a small-molecule lead optimization algorithm by training a convolutional variational autoencoder (CVAE) on MD trajectories of 48 different systems across four antigens and four HLA serotypes. We develop several new machine learning metrics including a structure-based anchor residue classification model as well as cluster comparison scores. ML-MD predictions agree well with experimental binding results and free energy perturbation-predicted binding affinities. Moreover, ML-MD metrics are independent of traditional MD stability metrics such as contact area and root-mean-square fluctuations (RMSF), which do not reflect binding affinity data. Finally, our work supports the role of structure-based deep learning techniques in antigen-specific immunotherapy design.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Robust training of machine learning interatomic potentials with dimensionality reduction and stratified sampling

Abstract Machine learning interatomic potentials (MLIPs) enable accurate simulations of materials at scales beyond that accessible by ab initio methods and play an increasingly important role in the study and design of materials. However, MLIPs are only as accurate and robust as the data on which they are trained. Here, we present DImensionality-Reduced Encoded Clusters with sTratified (DIRECT) sampling as an approach to select a robust training set of structures from a large and complex configuration space. By applying DIRECT sampling on the Materials Project relaxation trajectories dataset with over one million structures and 89 elements, we develop an improved materials 3-body graph network (M3GNet) universal potential that extrapolates more reliably to unseen structures. We further show that molecular dynamics (MD) simulations with the M3GNet universal potential can be used instead of expensive ab initio MD to rapidly create a large configuration space for target systems. We combined this scheme with DIRECT sampling to develop a reliable moment tensor potential for titanium hydrides without the need for iterative augmentation of training structures. This work paves the way for robust high-throughput development of MLIPs across any compositional complexity.

Qi, Ji (ORCID:0000000158089931)↗

Complex motion of steerable vesicular robots filled with active colloidal rods

Abstract While the collective motion of active particles has been studied extensively, effective strategies to navigate particle swarms without external guidance remain elusive. We introduce a method to control the trajectories of two-dimensional swarms of active rod-like particles by confining the particles to rigid bounding membranes (vesicles) with non-uniform curvature. We show that the propelling agents spontaneously form clusters at the membrane wall and collectively propel the vesicle, turning it into an active superstructure. To further guide the motion of the superstructure, we add discontinuous features to the rigid membrane boundary in the form of a kinked tip, which acts as a steering component to direct the motion of the vesicle. We report that the system’s geometrical and material properties, such as the aspect ratio and Péclet number of the active rods as well as the kink angle and flexibility of the membrane, determine the stacking of active particles close to the kinked confinement and induce a diverse set of dynamical behaviors of the superstructure, including linear and circular motion both in the direction of, and opposite to, the kink. From a systematic study of these various behaviors, we design vesicles with switchable and reversible locomotions by tuning the confinement parameters. The observed phenomena suggest a promising mechanism for particle transportation and could be used as a basic element to navigate active matter through complex and tortuous environments.

42 ENGINEERING↗

Measurement of CPAS Main Parachute Rate of Descent

The Crew Exploration Vehicle Parachute Assembly System (CPAS) is being designed to land the Orion Crew Module (CM) at a safe rate of descent at splashdown. Flight test performance must be measured to a high degree of accuracy to ensure this requirement is met with the most efficient design possible. Although the design includes three CPAS Main parachutes, the requirement is that the system must not exceed 33 ft/s under two Main parachutes, should one of the Main parachutes fail. Therefore, several tests were conducted with clusters of two Mains. All of the steady-state rate of descent data are normalized to standard sea level conditions and checked against the limit. As the Orion design gains weight, the system is approaching this limit to within measurement precision. Parachute "breathing," cluster interactions, and atmospheric anomalies can cause the rate of descent to vary widely and lead to challenges in characterizing parachute terminal performance. An early test had contradictory rate of descent results from optical trajectory and Differential Global Positioning Systems (DGPS). A thorough analysis of the data sources and error propagation was conducted to determine the uncertainty in the trajectory. It was discovered that the Time Space Position Information (TSPI) from the optical tracking provided accurate position data. However, the velocity from TPSI must be computed via numerical differentiation, which is prone to large error. DGPS obtains position through pseudo-range calculations from multiple satellites and velocity through Doppler shift of the carrier frequency. Because the velocity from DGPS is a direct measurement, it is more accurate than TSPI velocity. To remedy the situation, a commercial off-the-shelf product that combines GPS and an Inertial Measurement Unit (IMU) was purchased to significantly improve rate of descent measurements. This had the added benefit of solving GPS dropouts during aircraft extraction. Statistical probability distributions for CPAS Main parachute rate of descent and drag coefficient were computed and plotted. Using test data, a terminal rate of descent at splashdown can be estimated as a function of canopy loading.

Ray, Eric S.↗

Chemical identification of new particle formation and growth precursors through positive matrix factorization of ambient ion measurements

Abstract. In the lower troposphere, rapid collisions between ions and trace gases result in the transfer of positive charge to the highest proton affinity species and negative charge to the lowest proton affinity species. Measurements of the chemical composition of ambient ions thus provide direct insight into the most acidic and basic trace gases and their ion–molecule clusters – compounds thought to be important for new particle formation and growth. We deployed an atmospheric pressure interface time-of-flight mass spectrometer (APi-ToF) to measure ambient ion chemical composition during the 2016 Holistic Interactions of Shallow Clouds, Aerosols, and Land Ecosystems (HI-SCALE) campaign at the United States Department of Energy Atmospheric Radiation Measurement facility in the Southern Great Plains (SGP), an agricultural region. Cations and anions were measured for alternating periods of ∼ 24 h over 1 month. We use binned positive matrix factorization (binPMF) and generalized Kendrick analysis (GKA) to obtain information about the chemical formulas and temporal variation in ionic composition without the need for averaging over a long timescale or a priori high-resolution peak fitting. Negative ions consist of strong acids including sulfuric and nitric acid, organosulfates, and clusters of NO3- with highly oxygenated organic molecules (HOMs) derived from monoterpene (MT) and sesquiterpene (SQT) oxidation. Organonitrates derived from SQTs account for most of the HOM signal. Combined with the diel profiles and back trajectory analysis, these results suggest that NO3 radical chemistry is active at this site. SQT oxidation products likely contribute to particle growth at the SGP site. The positive ions consist of bases including alkyl pyridines and amines and a series of high-mass species. Nearly all the positive ions contained only one nitrogen atom and in general support ammonia and amines as being the dominant bases that could participate in new particle formation. Overall, this work demonstrates how APi-ToF measurements combined with binPMF analysis can provide insight into the temporal evolution of compounds important for new particle formation and growth.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Isolating Added Mass Load Components of CPAS Main Clusters

The current simulation for the Capsule Parachute Assembly System (CPAS) lacks fidelity in representing added mass for the 116 ft Do ringsail Main parachute. The availability of 3-D models of inflating Main canopies allowed for better estimation the enclosed air volume as a function of time. This was combined with trajectory state information to estimate the components making up measured axial loads. A proof-of-concept for an alternate simulation algorithm was developed based on enclosed volume as the primary independent variable rather than drag area growth. Databases of volume growth and parachute drag area vs. volume were developed for several flight tests. Other state information was read directly from test data, rather than numerically propagated. The resulting simulated peak loads were close in timing and magnitude to the measured loads data. However, results are very sensitive to data curve fitting and may not be suitable for Monte Carlo simulations. It was assumed that apparent mass was either negligible or a small fraction of enclosed mass, with little difference in results.

Ray, Eric S.↗

Wildfire Emission Transport and Its Impact on the Local Air Quality – Case Study Example from the LISTOS Campaign

The high O3 concentration and large aerosol backscatter were measured in New York City(NYC) region and Connecticut (CT) coastline between August 15-16, 2018 during the Long Island Sound Tropospheric Ozone Study (LISTOS) campaign. Two TOLNet ozone lidar systems, NASA Goddard Space Flight Center Tropospheric Ozone Differential Absorption Lidar (GSFC TROPOZ DIAL)and Langley Research Center (LaRC) Mobile Ozone Lidar (LMOL),were used to obtain vertical and temporal variation of local O3 concentration. The airborne High Altitude Lidar Observatory (HALO) system was used to detect the regional aerosol characteristic during this episode. The complex relationship between ozone and aerosol characteristics of wildfire emission layers was investigated. The HYSPLIT back-trajectory of the measured air parcel shows that the increase of the O3 concentration and aerosol backscatter are attributed to the significant wildfires in the Pacific Northwest and British Columbia regions during August 2018. Through correlation analyses, unique clustering relationships are identified between ozone and aerosol for different air mass types. This case study is further investigated in relation to satellite data from MODIS, MISR and CALIPSO to characterize plume behavior during transport. The importance of wildfire emission transport will be discussed in context of its impact to surface air quality at significant distances from fire events.

Liqiao Lei↗

Using Density-Corrected DFT to Understand Density-Driven and Functional-Dependent Errors in Ab Initio Simulations of the Hydrated Electron

The hydrated electron, an excess electron in liquid water, plays a crucial role in a plethora of chemical processes, motivating extensive research efforts to characterize its structure, dynamics, and reactivity in solution. Recent theoretical approaches to understanding this intriguing object have involved ab initio simulations based on density functional theory (DFT). Although DFT allows for the study of hydrated electron reactivity and quantum mechanical behavior, it is well-known that anionic systems can suffer from significant density-driven errors (DDEs). Density-corrected DFT (DC-DFT) provides a framework to mitigate such errors; the method reduces DDEs by replacing the self-consistent (SC) density associated with a given density functional with the Hartree–Fock (HF) density. Since HF densities tend to be more localized than DFT SC densities, the DC-DFT scheme significantly improves errors in calculations where the SC density is spuriously delocalized. Here, we investigate how the use of density correction affects the calculated properties of the DFT-simulated (PBEh) hydrated electron, a particularly challenging diffuse anionic system to simulate. First, we analyze charge delocalization in a system consisting of a model octahedral hydrated electron water cluster (the so-called Kevan structure) along with a spatially separated sulfur atom. We show that the use of density correction indeed reduces DDEs in comparison to a standard DFT global hybrid functional. We then propagate molecular dynamics trajectories of the hydrated electron using DC-DFT, where we find that DC further localizes electron density in the cavity region, a signature of reduced charge delocalization. Unfortunately, the decreased radius of gyration of the spin density and corresponding tightening of the local solvation structure from density correction causes predicted observables to deviate further from experimental measurements than when density correction is not employed. Here, we argue that DC’s worse agreement with experiment results from the removal of a fortuitous cancellation of errors that is intrinsic to the PBEh functional. This indicates that the difficulties with DFT to simulate hydrated electrons are primarily due to the inherent approximations in DFT rather than to density-driven errors.

Density functional theory↗

Illustrating galaxy–halo connection in the DESI era with illustrisTNG

ABSTRACT We employ the hydrodynamical simulation illustrisTNG to inform the galaxy–halo connection of the Luminous Red Galaxy (LRG) and Emission Line Galaxy (ELG) samples of the Dark Energy Spectroscopic Instrument (DESI) survey at redshift z ∼ 0.8. Specifically, we model the galaxy colours of illustrisTNG and apply sliding DESI colour–magnitude cuts, matching the DESI target densities. We study the halo occupation distribution (HOD) model of the selected samples by matching them to their corresponding dark matter haloes in the illustrisTNG dark matter run. We find the HOD of both the LRG and ELG samples to be consistent with their respective baseline models, but also we find important deviations from common assumptions about the satellite distribution, velocity bias, and galaxy secondary biases. We identify strong evidence for concentration-based and environment-based occupational variance in both samples, an effect known as ‘galaxy assembly bias’. The central and satellite galaxies have distinct dependencies on secondary halo properties, showing that centrals and satellites have distinct evolutionary trajectories and should be modelled separately. These results serve to inform the necessary complexities in modelling galaxy–halo connection for DESI analyses and also prepare for building high-fidelity mock galaxies. Finally, we present a shuffling-based clustering analysis that reveals a 10–15 ${{\ \rm per\ cent}}$ excess in the LRG clustering of modest statistical significance due to secondary galaxy biases. We also find a similar excess signature for the ELGs, but with much lower statistical significance. When a larger hydrodynamical simulation volume becomes available, we expect our analysis pipeline to pinpoint the exact sources of such excess clustering signatures.

79 ASTRONOMY AND ASTROPHYSICS↗

Poster Abstract: Leveraging Large Language Models to Reveal Interpretable Cooling Behaviors from Smart Thermostat Data

Frequent heatwaves and hot summers increasingly challenge occupant comfort, health, and energy grid stability. Addressing these challenges requires a detailed understanding of household cooling behaviors, such as thermostat adjustments and adaptive responses to extreme conditions. Traditional analyses often rely on aggregated numerical metrics that overlook subtle but important household-specific variations. In this study, we introduce a generalizable methodology that integrates large language models (LLMs) with vision capabilities to enable scalable and detailed analysis of residential thermostat data. Using Ecobee's Donate Your Data (DYD) dataset—which provides five-minute records of indoor temperatures, thermostat setpoints, and HVAC runtimes—we focus on two U.S. cities with contrasting summer climates : Austin (TX) and Phoenix (AZ). Because raw time-series data are not well suited for direct LLM analysis, we transform them into visual representations, such as daily indoor temperature trajectories and weekly runtime histograms, to better capture behavioral variations. Leveraging LLMs' visual interpretation, we extract descriptive behavioral features, including temperature preferences, time-of-day cooling orientation, anticipatory versus reactive heatwave responses, and behavioral consistency. These semantic features support unsupervised clustering to identify distinct occupant archetypes at scale, revealing differences—such as morning-centric anticipatory coolers versus households that shift toward warmer setpoints during heatwaves—that can inform demand response, resilience planning, and health-aware interventions. By converting raw numerical data into interpretable behavioral patterns, this methodology enables scalable and practical analysis of occupant behavior, supporting actionable insights for comfort, resilience, and energy management.

Nihar, Kopal↗

Parallelization of a Six Degree of Freedom Entry Vehicle Trajectory Simulation Using OpenMP and OpenACC

The art and science of writing parallelized software, using methods such as Open Multi-Processing (OpenMP) and Open Accelerators (OpenACC), is dominated by computer scientists. Engineers and non-computer scientists looking to apply these techniques to their project applications face a steep learning curve, especially when looking to adapt their original single threaded software to run multi-threaded on graphics processing units (GPUs). There are significant changes in mindset that must occur; such as how to manage memory, the organization of instructions, and the use of if statements (also known as branching). The purpose of this work is twofold: 1) to demonstrate the applicability of parallelized coding methodologies, OpenMP and OpenACC, to tasks outside of the typical large scale matrix mathematics; and 2) to discuss, from an engineer’s perspective, the lessons learned from parallelizing software using these computer science techniques. This work applies OpenMP, on both multi-core central processing units (CPUs) and Intel® Xeon Phi™ 7210, and OpenACC on GPUs. These parallelization techniques are used to tackle the simulation of thousands of entry vehicle trajectories through the integration of six degree of freedom (DoF) equations of motion (EoM). The forces and moments acting on the entry vehicle, and used by the EoM, are estimated using multiple models of varying levels of complexity. Several benchmark comparisons are made on the execution of six DoF trajectory simulation: single thread Intel® Xeon® E5-2670 CPU, multi-thread CPU using OpenMP, multi-thread Xeon Phi™ 7210 using OpenMP, and multi-thread NVIDIA® Tesla® K40 GPU using OpenACC. These benchmarks are run on the Pleiades Supercomputer Cluster at the National Aeronautics and Space Administration (NASA) Ames Research Center (ARC), and a Xeon Phi™ 7210 node at NASA Langley Research Center (LaRC).

Green, Justin S.↗

Temperature statistics in a radiatively heated particle-laden turbulent square duct flow

Radiation absorption by preferentially concentrated particles in a turbulent square duct flow is studied experimentally. The particle-laden flow is exposed to near-infrared radiation, and the gas phase temperature statistics are measured along the wall bisector of the duct. It is found that the instantaneous temperature fluctuations are comparable to the overall mean temperature rise. The temperature statistics at the duct centerline and near the wall are qualitatively different. The former reflects preferential concentration in isotropic flows while the latter displays evidence of particle clustering into streamwise elongated streaks. Comparison of the experimental data to a simplified heat transfer model suggests that the Lagrangian evolution of particle clusters and voids, and turbulent mixing in the vicinity of particle clusters, are important. This work was motivated by particle solar receiver technology, but the findings are also relevant to systems where there is localized heat release or mass transfer from disperse particles or droplets. It shows that obtaining Lagrangian histories of particle trajectories is an important next step towards understanding thermal transport phenomena in particle-laden turbulent flows.

42 ENGINEERING↗

Improved CPAS Photogrammetric Capabilities for Engineering Development Unit (EDU) Testing

This paper focuses on two key improvements to the photogrammetric analysis capabilities of the Capsule Parachute Assembly System (CPAS) for the Orion vehicle. The Engineering Development Unit (EDU) system deploys Drogue and Pilot parachutes via mortar, where an important metric is the muzzle velocity. This can be estimated using a high speed camera pointed along the mortar trajectory. The distance to the camera is computed from the apparent size of features of known dimension. This method was validated with a ground test and compares favorably with simulations. The second major photogrammetric product is measuring the geometry of the Main parachute cluster during steady-state descent using onboard cameras. This is challenging as the current test vehicles are suspended by a single-point attachment unlike earlier stable platforms suspended under a confluence fitting. The mathematical modeling of fly-out angles and projected areas has undergone significant revision. As the test program continues, several lessons were learned about optimizing the camera usage, installation, and settings to obtain the highest quality imagery possible.

Ray, Eric S.↗

Using Machine-Learning to Dynamically Generate Operationally Acceptable Strategic Reroute Options

The newly developed Trajectory Option Set (TOS), a preference-weighted set of alternative routes submitted by flight operators, is a capability in the U.S. traffic flow management system that enables automated trajectory negotiation between flight operators and Air Navigation Service Providers. The objective of this paper is to describe and demonstrate an approach for automatically generating pre-departure and airborne TOSs that have a high probability of operational acceptance. The approach uses hierarchical clustering of historical route data to identify route candidates. The probability of operational acceptance is then estimated using predictors trained on historical flight plan amendment data using supervised machine learning algorithms, allowing the routes with highest probability of operational acceptance to be selected for the TOS. Features used describe historical route usage, difference in flight time and downstream demand to capacity imbalance. A random forest was found to be the best performing algorithm for learning operational acceptability, with a model accuracy of 0.96. The approach is demonstrated for an historical pre-departure flight from Dallas/Fort Worth International Airport to Newark Liberty International Airport.

Evans, Antony↗

Using Machine-Learning to Dynamically Generate Operationally Acceptable Strategic Reroute Options

The newly developed Trajectory Option Set (TOS), a preference-weighted set of alternative routes submitted by flight operators, is a capability in the U.S. traffic flow management system that enables automated trajectory negotiation between flight operators and Air Navigation Service Providers. The objective of this paper is to describe and demonstrate an approach for automatically generating pre-departure and airborne TOSs that have a high probability of operational acceptance. The approach uses hierarchical clustering of historical route data to identify route candidates. The probability of operational acceptance is then estimated using predictors trained on historical flight plan amendment data using supervised machine learning algorithms, allowing the routes with highest probability of operational acceptance to be selected for the TOS. Features used describe historical route usage, difference in flight time and downstream demand to capacity imbalance. A random forest was found to be the best performing algorithm for learning operational acceptability, with a model accuracy of 0.96. The approach is demonstrated for an historical pre-departure flight from Dallas/Fort Worth International Airport to Newark Liberty International Airport.

Evans, Antony↗

Navigation of the Twin GRAIL Spacecraft into Science Formation at the Moon

On February 29, 2012 the twin NASA Gravity Recovery And Interior Laboratory (GRAIL) spacecraft, Ebb and flow, achieved precise synchronized formation for collecting highly sensitive lunar gravity data. This was accomplished after performing a total of 27 propulsive maneuvers between the two spacecraft (13 on Ebb, 14 on Flow) over six months. Each 300 kg GRAIL spacecraft independently flew a 3.8-month, low-energy trajectory to reach the Moon after separation from the launch vehicle on September 10, 2011. The space craft were captured into 11.5 hr co- planar polar orbits after performing Lunar Orbit Insertion (LOI) maneuvers on New Years Eve (Dec 31, 2011) and New Years Day (Jan 1, 2012), respectively for Ebb, and Flow. Once captured, each spacecraft performed clusters of period reduction maneuvers to bring their orbit periods down to just less than 2 hrs. Finally, the orbiters we replaced into science formation by performing five strategic maneuvers (2 on Ebb, 3 on Flow). These maneuvers ensured 3 months of orbit life time with mean altitudes of 55 km and separations of 82-217 km by targeting the orbits' eccentricity vectors to specific locations. This paper will discuss the navigation strategy and performance of the twin GRAIL spacecraft from the September 10, 2011 launch through the end of the Prime Mission Science Phase in June 2012.

lunar gravity↗

Dynamics of inspiraling dark energy

Abstract We investigate the dynamics of a multifield dark energy model, which arises from certain rapid-turning and inspiraling trajectories in field space. We find the speed of sound $$c_s$$ c s of the dark energy perturbations around the background and show that $$c_s$$ c s is monotonically decreasing with time. Furthermore, it has a positive-definite lower bound that implies a certain clustering scale. We also extend the previously known background solution for dark energy to an exact solution that includes matter. This allows us to address the implications of our model for two cosmological tensions. More precisely, we argue that the $$\sigma _8$$ σ 8 tension can be alleviated generically, while reducing the Hubble tension requires certain constraints on the parameter space of the model. Notably, a necessary condition for alleviating the Hubble tension is that the transition from matter domination to the dark energy epoch begins earlier than in $$\Lambda $$ Λ CDM.

Anguelova, Lilia↗