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DOE OSTI2023

Reducing impacts of artificial ponding in modeling salt marshes using a conductivity-formulated subgrid model

The landforms of salt marsh systems are rather complex, with meandering channel networks cutting through low-lying, extensive marsh platforms. Some small-scale topographic details are critical to flooding and draining processes but cannot be reflected in the Digital Elevation Model (DEM) due to limited measurement resolution and vegetation bias. Numerical models need a grid with high enough resolution to capture the small-scale connectivity to correctly model the small-scale flow processes, making the model computationally unaffordable. Here, in this study, we derived a subgrid model, which couples two flow components, one is the regular subgrid model for simulating the subgrid-resolved flows, and the other is a conductivity-formulated porous flow model for modeling small-scale gut flows unresolved at the subgrid level. The model validation was performed using an idealized case with a narrow slot that was unresolved in the coupled flow model. Model results were compared with a slot-resolved regular subgrid model where only surface flows are solved and suggested that, with a proper model parameterization, the coupled flow model is capable of reproducing flooding and draining processes similar to the slot-resolved subgrid model of surface flow. The model was applied to simulating flooding and draining processes in a meso-tidal salt marsh. The model results demonstrate that the coupled subgrid model can be used to reduce the impacts of artificial ponding that usually occur in numerical simulations of salt marshes with numerous narrow gullies and creeks.

54 ENVIRONMENTAL SCIENCES↗

NASA NTRS2000

Surface Change Detection Using Large Footprint Laser Altimetry

Laser altimeters provide a precise and accurate method for mapping topography at fine horizontal and vertical scales. A laser altimeter provides range by measuring the roundtrip flight time of a short pulse of laser light from the laser altimeter instrument to the target surface. The range is then combined with laser beam pointing knowledge and absolute position knowledge to provide an absolute measurement of the surface topography. Newer generations of laser altimeters measure the range by recording the shape and time of the outgoing and received laser pulses. The shape of the return pulse can also provide unique information about the vertical structure of material such as vegetation within each laser footprint. Distortion of the return pulse is caused by the time-distributed reflections adding together and representing the vertical distribution of surfaces within the footprint. Larger footprints (10 - 100m in diameter) can support numerous target surfaces and thus provide the potential for producing complex return pulses. Interpreting the return pulse from laser altimeters has evolved from simple timing between thresholds, range-walk corrections, constant-fraction discriminators, and multi-stop time interval units to actual recording of the time varying return pulse intensity - the return waveform. Interpreting the waveform can be as simple as digitally thresholding the return pulse, calculating a centroid, to fitting one or more gaussian pulse-shapes to the signal. What we present here is a new technique for using the raw recorded return pulse as a raw observation to detect centimeter-level vertical topographic change using large footprint airborne and spaceborne laser altimetry. We use the correlation of waveforms from coincident footprints as an indication of the similarity in structure of the waveforms from epoch to epoch, and assume that low correlation is an indicator of vertical structure or elevation change. Thus, using vertically and horizontally geolocated waveforms as raw observables (i.e., waveforms tied to a common reference ellipsoid), we assess whether epoch-to-epoch vertical ground motion results in a decrease in the correlation of coincident waveforms over time, and whether this can be used to quantify the magnitude of the deformation. Results of computer models and an example over an area of eroded beachfront will be presented.

Blair, J. Bryan↗

NASA NTRS2010

ICESat-2 Simulated Data from Airborne Altimetery

Ice, Cloud, and land Elevation Satellite-2 (ICESat-2) is scheduled to launch in 2015 and will carry onboard the Advanced Topographic Laser Altimeter System (ATLAS), which represents a new approach to spaceborne determination of surface elevations. Specifically, the current ATLAS design is for a micropulse, multibeam, photon-counting laser altimeter with lower energy, a shorter pulse width, and a higher repetition rate relative to the Geoscience Laser Altimeter (GLAS), the instrument that was onboard ICESat. Given the new and untested technology associated with ATLAS, airborne altimetry data is necessary (1) to test the proposed ATLAS instrument geometry, (2) to validate instrument models, and (3) to assess the atmospheric effects on multibeam altimeters. We present an overview of the airborne instruments and datasets intended to address the ATLAS instrument concept, including data collected over Greenland (July 2009) using an airborne SBIR prototype 100 channel, photon-counting, terrain mapping altimeter, which addresses the first of these 3 scientific concerns. Additionally, we present the plan for further simulator data collection over vegetated and ice covered regions using Multiple Altimeter Beam Experimental Lidar (MABEL), intended to address the latter two scientific concerns. As the ICESAT-2 project is in the design phase, the particular configuration of the ATLAS instrument may change. However, we expect this work to be relevant as long as ATLAS pursues a photon-counting approach.

Brunt, Kelly M.↗

DOE OSTI2025

Soil biogeochemical properties and metrics of tree-mycorrhizal dominance for a 25-Ha forest in South Central Indiana, USA.

This data package contains a dataset used in the papers “Seeing the forest for all the trees: Mycorrhizal-associated nutrient economies are modulated by stem density and the synchrony between overstory and understory communities” and “Mycorrhizal associations of tree species influence soil nitrogen dynamics via effects on soil acid–base chemistry”. Four csv files are included along with a dataset. The dataset features chemical soil properties for a single sampling campaign within the 25 Ha Lilly-Dickey Woods Smithsonian Forest Global Earth Observatory (ForestGEO) plot in South Central Indiana, USA (ldw_dat_raw.csv). Also included are separate files focused on pH (pH_data.csv), carbon and nitrogen (CN_data.csv), and nitrification rates (Nitrification_data.csv). These variables are commonly associated with the tree-mycorrhizal dominance of forest stands. In these data subsets, each soil variable was matched to a 10 meter radius neighborhood wherein metrics of tree-mycorrhizal dominance (basal area, stem count, importance value, etc.) were calculated. Models between these soil variables and dominance metrics were used to investigate how different assessments of mycorrhizal associated nutrient economies (MANE) capture these relationships. This research was performed as a part of the Smithsonian ForestGEO project. This data package can be used to explore spatial variability in soil chemistry within a mature hardwood forest, or it can be combined with the included tree data, other fine-scale spatial information, or other tree inventory data for the site to evaluate how soil chemistry varies with tree community composition or edaphic or topographic properties.

Craig, Matthew [ORNL] (ORCID:0000000288907920)↗

NASA NTRS2019

The Ice, Cloud, and Land Elevation Satellite-2 Mission: A Global Geolocated Photon Product Derived from the Advanced Topographic Laser Altimeter System

The Ice, Cloud, and land Elevation Satellite – 2 (ICESat-2) observatory was launched on 15 September 2018 to measure ice sheet and glacier elevation change, sea ice freeboard, and enable the determination of the heights of Earth’s forests. ICESat-2’s laser altimeter, the Advanced Topographic Laser Altimeter System (ATLAS) uses green (532 nm) laser light and single-photon sensitive detection to measure time of flight and subsequently surface height along each of its six beams. In this paper, we describe the major components of ATLAS, including the transmitter, the receiver and the components of the timing system. We present the major components of the ICESat-2 observatory, including the Global Positioning System, star trackers and inertial measurement unit. The ICESat-2 Level 1B data product (ATL02) provides the precise photon round-trip time of flight, among other data. The ICESat-2 Level 2A data product (ATL03) combines the photon times of flight with the observatory position and attitude to determine the geodetic location (i.e. the latitude, longitude and height) of the ground bounce point of photons detected by ATLAS. The ATL03 data product is used by higher-level (Level 3A) surface-specific data products to determine glacier and ice sheet height, sea ice freeboard, vegetation canopy height, ocean surface topography, and inland water body height.

ICESat-2↗

NASA NTRS1974

Geological evaluation and applications of ERTS-1 imagery over Georgia

ERTS-1 70mm and 9 x 9 film negatives are being used by conventional and color enhancement methods as a tool for geologic investigation. Geologic mapping and mineral exploration by conventional methods is very difficult in Georgia. Thick soil cover and heavy vegetation cause outcrops of bed rock to be small, rare and obscure. ERTS imagery, and remote sensing in general have helped delineate: (1) major tectonic boundaries; (2) lithologic contacts; (3) foliation trends; (4) topographic lineaments; and (5) faults. The ERTS-1 MSS imagery yields the greatest amount of geologic information on the Piedomont, Blue Ridge, and Valley and Ridge Provinces of Georgia where topography is strongly controlled by the bedrock geology. ERTS imagery, and general remote sensing techniques, have provided us with a powerful tool to assist geologic research; have significantly increased the mapping efficiency of our field geologists; have shown new lineaments associated with known shear and fault zones; have delineated new structural features; have provided a tool to re-evaluate our tectonic history; have helped to locate potential ground water sources and areas of aquifer recharge; have defined areas of geologic hazards; have shown areas of heavy siltation in major reservoirs; and by its close interval repetition, have aided in monitoring surface mine reclamation activities and the environmental protection of our intricate marshland system.

Pickering, S. M.↗

NASA NTRS1998

Lasers in Earth and Planetary Exploration

For over 3 decades, lasers have been a tool of the space programs of the world for accomplishing a variety of engineering and scientific objectives. The majority of these uses have, however, been largely Earth-based and only a few lasers have actually been flown and operated in Earth orbit and even fewer on missions to the planets. However, in the last few years laser altimeters, lidars, and ranging systems have been part of space missions to the moon, an asteroid, and Mars; and more are planned and contemplated in the future exploration of the Earth and solar system. Early in 1994, the Clementine mission was launched to the moon and carried a laser altimeter that made the first systematic topographic survey of the moon during its 2-month observation period. This mission significantly improved our understanding of the shape and topography of the moon and along with gravity information obtained from the tracking data modified some of our thinking about the moon, the thickness of ice crust and the isostatic state of the highlands and basins. On September 11, 1997, the Mars Global Surveyor (MGS) entered into orbit around Mars and the Mars Orbiter Laser Altimeter (MOLA) started to map the topography of the planet to unprecedented accuracy. On its first pass across the planet, MOLA showed large areas of the northern hemisphere to be flatter than any other known surface on Earth or any other body explored to date. In January 1999, the NEAR spacecraft which carries a laser ranger (NLR), will arrive at the S-type asteroid, Eros, and during the following year the NLR will help determine the shape and rotational dynamics of this asteroid. In the Spring of 2000, the Vegetation Canopy Lidar (VCL) mission will be launched and employing a multi-beam laser altimeter (MBLA) will measure the Earth's tree canopy shapes and heights and begin to globally monitor the biomass. The following year, in 2001, the Geoscience Laser Altimeter System, which carries a 2 wavelength laser altimeter of a few centimeter accuracy, will begin a multi-year observation program of the Earth's icecaps, land mass, oceans and the clouds of the atmosphere. At the same time, laser ranging to satellites and the moon is likely to be poised to reach to the planets and track spacecraft throughout the inner solar system by applying optical transponder technology to increase its distance capability.

Smith, David E.↗

NASA NTRS2004

Determining the Optimum Post Spacing of LIDAR-Derived Elevation Data in Varying Terrain for Flood Hazard Mapping Purposes in North Carolina and Texas

The major flood events in the United States in the past few years have made it apparent that many floodplain maps being used by State governments are outdated and inaccurate. In response, many Stated have begun to update their Federal Emergency Management Agency (FEMA) Digital Flood Insurance Rate Maps. Accurate topographic data is one of the most critical inputs for floodplain analysis and delineation. Light detection and ranging (LIDAR) altimetry is one of the primary remote sensing technologies that can be used to obtain high-resolution and high-accuracy digital elevation data suitable for hydrologic and hydraulic (H&H) modeling, in part because of its ability to "penetrate" various cover types and to record geospatial data from the Earth's surface. However, the posting density or spacing at which LIDAR collects the data will affect the resulting accuracies of the derived bare Earth surface, depending on terrain type and land cover type. For example, flat areas are thought to require higher or denser postings than hilly areas to capture subtle changes in the topography that could have a significant effect on flooding extent. Likewise, if an area has dense understory and overstory, it may be difficult to receive LIDAR returns from the Earth's surface, which would affect the accuracy of that bare Earth surface and thus would affect flood model results. For these reasons, NASA and FEMA have partnered with the State of North Carolina and with the U.S./Mexico Foundation in Texas to assess the effect of LIDAR point density on the characterization of topographic variation and on H&H modeling results for improved floodplain mapping. Research for this project is being conducted in two areas of North Carolina and in the City of Brownsville, Texas, each with a different type of terrain and varying land cover/land use. Because of various project constraints, LIDAR data were acquired once at a high posting density and then decimated to coarser postings or densities. Quality assurance/quality control analyses were performed on each dataset. Cross sections extracted form the high density and then the decimated datasets were individually input into an H&H model to determine the model's sensitivity to topographic variation and the effect of that variation on the resulting water profiles. Additional analysis was performed on the Brownsville, Texas, LIDAR data to determine the percentage of returns that "penetrated" various types of canopy or vegetative cover. It is hoped that the results of these studies will benefit state and local communities as they consider the post spacing at which to acquire LIDAR data (which affects cost) and will benefit FEMA as the Agency assesses the use of different technologies for updating National Flood Insurance Program and related products.

Berglund, Judith↗

DOE OSTI2024

The importance of accounting for landscape position when investigating grasslands: A multidisciplinary characterisation of a Californian coastal grassland

Data from the characterisation of the Point Reyes Field Site, published in AGU Earth's Future under the title: The importance of accounting for landscape position when investigating grasslands: A multidisciplinary characterisation of a Californian coastal grassland. This paper explored the effect of landscape position on the response of a Californian grassland to seasonal changes. All files are csv files. The EMI data contains 8 csv files with a metadata csv explaining the columns. The dataset also includes soil variables including total concentrations calculated from fused samples, then dissolved and measured on ICP-AES for whole-rock elements and ICP-MS for trace elements. Mineral composition was attained using X-ray diffraction at BL 11-3 at SSRL . Data was then run through the High Score database to characterise different mineral phases. total It also includes a table with bulk soil characteristics such as soil pH, cation exchange capacity, and soil textural data. Data from Teros 12 Meter soil moisture, electrical conductivity and temperature sensors are presented in SMS Csv file. While the WL bottom and top files contain data from Piezometers measuring the ground water table. We have included a csv file that contains soil CO2 efflux data from Feb 2021-Oct 2021 in the Point Reyes Grassland Experiment We have included the spatially orientated (easting northing) remotely sensed datasets that were used in the K-means clustering analysis conducted on our site with electrical conductivity, normalised difference vegetation index, elevation, slope, solar radiation, topographic position and wetness index, and a clustering score. Finally there is a list of all the identified grassland species at the site.For more information on flux data, please contact the corresponding author.

54 ENVIRONMENTAL SCIENCES↗

NASA NTRS2021

Maximum entropy modeling to identify physical drivers of shallow snowpack heterogeneity using unpiloted aerial system (UAS) lidar

Understanding the spatial variability of the snowpack is valuable for hydrologists and ecologists seeking to predict hydrological processes in a cold region. Snow distribution is a function of interactions among static variables, such as terrain, vegetation, and soil properties, and dynamic meteorological variables, such as solar radiation, wind speed and direction, and soil moisture. However, identifying the dominant physical drivers responsible for spatial patterns of the snowpack, particularly for ephemeral, shallow snowpacks, has been challenging due to the lack of the high-resolution snowpack and physical variables with high vertical accuracy as well as inherent limitations in traditional approaches. This study uses an Unpiloted Aerial System (UAS) lidar-based snow depth and static variables (1-m spatial resolution) to analyze field-scale spatial structures of snow depth and apply the Maximum Entropy (MaxEnt) model to identify primary controls over open terrain and forests at the University of New Hampshire Thompson Farm Research Observatory, New Hampshire, United States. We found that, among nine topographic and soil variables, plant functional type and terrain roughness contribute up to 80% and 76% of relative importance in the MaxEnt framework to predict locations of deeper or shallower snowpacks, respectively, across a mixed temperate forested and field landscape. Soil variables, such as organic matter and saturated hydraulic conductivity, were also important controls (up to 70% and 81%) on snow depth spatial variations for both open and forested landscapes suggesting spatial variations in soil variables under snow can control thermal transfer among soil, snowpack, and surface-atmosphere. This work contributes to improving land surface and snow models by informing parameterization of the sub-grid scale snow depths, down-scaling remotely sensed snow products, and understanding field scale snow states.

Eunsang Cho↗

DOE OSTI2025

Methane emission hotspots in a boreal forest-fen mosaic potentially linked to deep taliks

Permafrost thaw is transforming boreal forests into mosaics of wetlands and drier uplands. Topographic controls on hydrological and ecological conditions impact methane (CH 4 ) fluxes, contributing to uncertainty in local and regional CH 4 budgets and underlying drivers. The objective of this study was to explore CH 4 fluxes and their drivers in a transitioning boreal forest-fen ecosystem (Goldstream Valley, Alaska, USA). This landscape is characterized by thawing discontinuous permafrost and heterogeneous mosaics of fens, collapse-scar channels, and small mounds of permafrost soils. From a survey in July 2021, observed chamber CH4 fluxes included fen areas with intermediate to very high emissions (29.8–635.3 mg CH 4 m −2 d −1 ), clustered locations with CH 4 uptake (−2.11 to −0.7 mg CH 4 m −2 d −1 ), and three anomalous emission hotspots (342.4–772.4 mg CH 4 m −2 d −1 ) that were located near samples with lower emissions. Some surface and near-surface variables partially explained the spatial variation in CH 4 flux. Log-transformed CH 4 flux had a positive linear relationship with soil moisture at 20 cm depth ( R 2 = 0.31, p -value < 1e-5) and negative linear relationships with microtopography ( R 2 = 0.13, p -value < 0.006) and slope ( R 2 = 0.28, p -value < 2e-5). Methane emissions generally occurred in flat, wet, graminoid-dominated fens, whereas CH 4 uptake occurred on permafrost mounds dominated by feather mosses and woody vegetation. However, the CH 4 hotspots occurred on drier, slightly sloped locations with low or undetectable near-surface methanogen abundance, suggesting that CH 4 was produced in deeper soils. When the hotspot samples were omitted, log-transformed CH 4 flux had a positive linear relationship with near-surface methanogen abundance ( R 2 = 0.29, p -value = 0.0023), and stronger linear relationships with soil moisture, slope, and soil macronutrient concentrations. Our findings suggest that some CH 4 emission hotspots could arise from CH 4 in deep taliks. The inference that methanogenesis occurs in deep taliks was strengthened by the identification of intrapermafrost taliks across the study area using low-frequency geophysical induction. This study assesses surface spatial heterogeneity in the context of subsurface permafrost conditions and highlights the complexity of CH 4 flux patterns in transitioning forest-wetland ecosystems. To better inform regional CH 4 budgets, further research is needed to understand the spatial distribution of terrestrial CH 4 hotspots and to resolve their surface, near-surface, and subsurface drivers.

boreal↗

NASA NTRS1996

On the Capabilities of Using AIRSAR Data in Surface Energy/Water Balance Studies

The capabilities of using remote sensing data, and in particular multifrequency/multipolarization SAR data, like AIRSAR, for the retrieval of surface parameters, depend considerably on the specificity of each application. The potentials, and limitations, of SAR data in ecological investigations are well known. Because the chemistry is a major component in such studies and because of the almost lacking chemical information at the wavelengths of SAR data, the capabilities of using SAR-derived information in such studies are considerably limited. However, in the case of surface energy/water balance studies, the determination of the amount of water content, both in the soil and in the plants, is a major component in all modeling approaches. As the information about water content is present in the SAR signal, then the role of SAR data in studies where water content is to be determined becomes clearly predominant. Another situation where the role of SAR data becomes dominant over other remote sensing systems is the case of dense canopies. Because of the penetration capabilities of microwave data, which is especially superior as compared to optical data, information about the canopy as a whole and even the underlying soil is contained in the SAR data, while only the top canopy provides the information content in the case of optical data. In the case of relatively dense canopies, as has been demonstrated in this study, such different penetration capabilities provide very different results in terms of the derived total canopy water content, for instance. However, although all such capabilities are well known, unfortunately there are also well known limitations. Apart from calibration-related aspects (that we will not consider in this study), and apart from other intrinsic problems (like image noise, topographic corrections, etc.) which also significantly affect the derived results, we will concentrate on the problem of extracting information from the data. Even at this level, methods are still not fully well established, especially over vegetation-covered areas. In this paper, an algorithm is described which allows derivation of three fundamental parameters from SAR data: soil moisture, soil roughness and canopy water content, accounting for the effects of vegetation cover by using optical (Landsat) data as auxiliary. Capabilities and limitations of the data and algorithms are discussed, as well as possibilities to use these data in energy/water balance modeling studies. All the data used in this study were acquired as part of the Intensive Observation Period in June-July 1991 (European Multisensor Aircraft Campaign-91), as part of the European Field Experiment in a Desertification- threatened Area (EFEDA), a European contribution to the global-change research sponsored by the IGBP program (Bolle et al., 1993).

Moreno, Jose F.↗

DOE OSTI2022

Variability in observed stable water isotopes in snowpack across a mountainous watershed in Colorado

In this study, isotopic information from 81 snowpits was collected over a 5-year period in a large, Colorado watershed. Data spans gradients in elevation, aspect, vegetation, and seasonal climate. They are combined with overlapping campaigns for water isotopes in precipitation and snowmelt, and a land-surface model for detailed estimates of snowfall and climate at sample locations. Snowfall isotopic inputs, describe the majority of δ18O snowpack variability. Aspect is a secondary control, with slightly more enriched conditions on east and north facing slopes. This is attributed to preservation of seasonally enriched snowfall and vapour loss in the early winter. Sublimation, expressed by decreases in snowpack d-excess in comparison to snowfall contributions, increases at low elevation and when seasonal temperature and solar radiation are high. At peak snow accumulation, post-depositional fractionation appears to occur in the top 25 ± 14% of the snowpack due to melt-freeze redistribution of lighter isotopes deeper into the snowpack and vapour loss to the atmosphere during intermittent periods of low relative humidity and high windspeed. Relative depth of fractionation increases when winter daytime temperatures are high and winter precipitation is low. Once isothermal, snowpack isotopic homogenization and enrichment was observed with initial snowmelt isotopically depleted in comparison to snowpack and enriching over time. The rate of δ18O increase (d-excess decrease) in snowmelt was 0.02‰ per day per 100-m elevation loss. Isotopic data suggests elevation dictates snowpack and snowmelt evolution by controlling early snow persistence (or absence), isotopic lapse rates in precipitation and the ratio of energy to snow availability. Hydrologic tracer studies using stable water isotopes in basins of large topographic relief will require adjustment for these elevational controls to properly constrain stream water sourcing from snowmelt.

54 ENVIRONMENTAL SCIENCES↗

NASA NTRS2000

Landscape Evolution, A Comparison of Form and Process

This project's goals were to collect, analyze and interpret 3-dimensional physiographic data for understanding the processes responsible for landscape modification. The primary landforms to be studied were Neogene cinder cones in Arizona (San Francisco Volcanic Field (SFVF), Coconino and Kaibab National Forests, Arizona). We also obtained and are still analyzing digital topographic data for the Long Valley-White Mountains area of California, which display Quaternary normal fault scarps, as well as extensive evidence of degradation. The work resulted in a large database of measured rates of downslope transport of slope debris. It was hypothesized that the work would increase our understanding of process-response models of hillslope degradation, and of the effects of climate change and other parameters on degradation rates. In greater detail, our primary goal was to compare evolutionary sequences of hillslopes, as exemplified by the topography of landforms of the same type but of different ages, with measurements of the surficial processes active on the landforms. Assuming that other parameters, such as hillslope materials and vegetation are held constant, and that the effects of changing climate are negligible, then the sediment transport rates measured today on the landforms should be the same as those calculated from the inversion of landform topography by use of a diffusion-type model. However, if the effects of changing climate or other factors are not negligible, then the observed transport rates would differ from those which must be invoked to explain the current topography. We hypothesized in fact that because degradation on the event scale is highly transient and localized, we would find a wide divergence between modern, measured transport rates, and rates calculated by global landform inversion or modeling. Because of the length of time involved in collection of sufficient data on current degradation rates, we are still continuing to analyse and interpret the data. Completion of the work will increase our understanding of the potential effects of anthropogenic climate and surficial change on the Earth's solid surface, and possibly allow us to constrain paths of hill-slope evolution following anthropogenic modifications, as well as compare the short-term with the long-term rates of hillslope degradation.

Bursik, Marcus I.↗

DOE OSTI2021

Slope-Aspect Induced Climate Differences Influence How Water Is Exchanged Between the Land and Atmosphere

Cross-slope climate differences in the midlatitudes are ecologically important, and impact vegetation-mediated water balance between the earth surface and the atmosphere. We made high-resolution in situ observations of air temperature, relative humidity, soil moisture, insolation, and sap velocity observations on 14 Pacific madrone trees (Arbutus menziesii) spanning adjacent north and south slopes at the University of California's Angelo Coast Range Reserve. To understand the cross-slope response of sap velocity, a proxy for transpiration, to microclimate, we modeled the sap velocity on each slope using a transpiration model driven by ambient environment and parameterized with a Markov Chain Monte Carlo parameter estimation process. The results show that trees on opposing slopes do not follow a shared pattern of physiological response to transpiration drivers. This means that the observed sap velocity differences are not due entirely to observed microclimate differences, but also due to population-level physiological differences, which indicates acclimation to inhabited microclimate. While our present data set and analytical tools do not identify mechanisms of acclimation, we speculate that differing proportions of sun-adapted and shade-adapted leaves, differences in stomatal regulation, and cross-slope root zone moisture differences could explain some of the observed and modeled differences.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2020

Characterizing the uppermost 100 m structure of the San Jacinto fault zone southeast of Anza, California, through joint analysis of geological, topographic, seismic and resistivity data

We present results from complementary geological, topographic, seismic and electrical resistivity surveys at the Sagebrush Flat (SGB) site along the Clark fault (CF) strand of the San Jacinto fault zone trifurcation area southeast of Anza, California. Joint interpretation of these data sets, each with unique spatiotemporal sensitivities, allow us to better characterize the shallow (<100 m) fault zone at this structurally complex site. Geological mapping at the surface shows the CF has three main subparallel strands within a <100 m zone with varying degrees of rock damage. These strands intersect units of banded gneiss and tonalite, and various sedimentary units. Near the surface, the weathered but more intact tonalite and gneiss to the southwest have relatively high VP. The low-lying flat sedimentary basins around the two southwestern-most CF strands and elevated damaged gneiss to the northeast have lowest VP <500 m s–1. The high relief of the northeast gneiss unit may in part be explained by its extensive damage and inferred increased relative rock uplift. Resistivity imaging shows the unconsolidated dry basin sediments (maximum >1300 Ohm.m) contrasted against the compacted fine-grained (potentially wet) materials within the CF core and the Bautista Formation (minimum <40 Ohm.m), which is slightly elevated above the flat basins. The inverse relationship between VP (increases) and resistivity (decreases) in the uppermost ~15 m can be characterized as log–log linear with slopes of –2.6 to –4. At depths >30 m, the velocity heterogeneity near the surface merges into larger-scale structures that are generally slower on the northeast side of the CF core compared to the southwest side (as much as ~40 per cent reduction in average VP). A previous study revealed a 20–37 per cent variability in peak ground velocities across the SGB site from local earthquakes. The upper end of that range is associated with the near-surface unconsolidated sedimentary basins and northeast damaged gneiss unit. Preliminary analysis of time-dependent topography mostly shows effects of changing vegetation and anthropogenic activity.

Geochemistry & Geophysics↗

DOE OSTI2025

PAVC Gridded 20m Alaska NGEE Tier3 PFTs v1.0

These 20-meter spatial resolution gridded products provide per-pixel fractional cover (%) of Next Generation Ecosystem Experiments (NGEE) Arctic Plant Functional Types (PFTs) Tier 3 across Alaska, north of the boreal treeline. The products were developed for the NGEE Arctic project, which is improving Arctic vegetation representation and parameterization of the E3SM Land Model. This dataset includes 8 files containing fractional cover for NGEE Tier 3 PFTs (https://data.ess-dive.lbl.gov/view/doi:10.15485/2529470): (1) bryophytes; (2) lichens; (3) non-vascular plants, i.e., the sum of lichens and bryophytes; (4) deciduous shrubs, (5) evergreen shrubs, (6) forbs, (7) graminoids, and a non-PFT class, (8) litter. Each pixel contains the percent cover (expressed as a fraction of total ground cover) that was predicted by random-forest regression models. The random-forest models were trained on cover data collected at 978 plots from 2010 to 2021, of which are archived in the Pan-Arctic Vegetation Cover (PAVC) database (https://data.ess-dive.lbl.gov/datasets/doi:10.15485/2483557). The plot cover was linked to 20-meter spatial resolution, satellite-derived predictor variables: Sentinel-2 spectra and Sentinel-1 polarizations averaged over the 2019 growing season, as well as topographical features derived from ArcticDEM. Then, spatio-temporally anomalous plot data that introduced large variability to the regression outcomes were dropped using the Cook’s distance outlier detection method, and the models were re-created using high-quality plots and their associated satellite derived explanatory variables per each PFT. The correlations between plot-observed and satellite-derived fractional cover for all PFTs were well correlated (R2 = 0.69–0.95 and 0.5 for litter) and had low RMSE bias (0.02–0.11). This research was performed as a part of the NGEE Arctic project. The NGEE Arctic project was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2025

Metagenome-assembled genomes from topsoils collected during NEON campaign in East River, CO (06/14/2018-06/28/2018)

The Watershed Function Science Focus Area (WF SFA) at Lawrence Berkeley National Lab is working to build a mechanistic understanding of the distribution and dynamics of biogeochemical processes in mountainous watersheds and their response to perturbation. In June 2018, the NEON (National Ecological Observatory Network) Airborne Observatory Platform (AOP) performed a taskable airborne imaging campaign to collect visible to shortwave infrared (VSWIR) imaging spectroscopy and LiDAR data across 330 km2 in the Upper East River at Crested Butte, CO. We conducted a parallel ground sampling campaign to sample vegetation traits, as well as soil physical, chemical, and microbiological characteristics. We collected these samples from 438 sites across 12 locations spanning much of the elevation, topographic, and geologic variability across the study area. A subset of 250 samples were used for soil metagenomics which is presented here. In addition, at each site, vegetation samples were collected to measure species-specific leaf water content and leaf mass area, foliar elemental composition and foliar CN stable isotope ratios. Soil samples were collected to measure soil physical properties which include bulk density and soil texture analysis. A suite of soil chemical properties was measured from the samples collected at each site, including pH, organic matter, concentrations exchangeable cations, total elemental composition, and the concentrations of extractable N pools (e.g. total free amino acids, ammonium, nitrate, dissolved organic N, and total dissolved N). Additionally, we have measured soil microbial biomass CN stoichiometry. Here, we present 1982 metagenome-assembled genomes (MAGs) for the bacterial and archaeal community from topsoil collected from during NEON 2018 campaign. All metagenomes were sequenced at JGI (Joint Genome Institute) (GOLD Study ID: Gs0149986). Metagenomes were assembled using JGI Metagenome Workflow (10.1128/mSystems.00804-20). The dataset includes (1) zip files for 1982 MAG fasta files (neon_genomes1-5.tar.gz, split into 5 tarballs to keep tarballs under 0.5 GB), (2) neon_Gs0149986_samples_soilproperties_metagenomes.csv: the sample information together with the accession numbers for the underlying metagenomes and the associated soil physical and chemical measurements in NMDC (National Microbiome Data Collaborative) compliant format, (3) neon_Gs0149986.kml: location bounding box file for the sampled locations, (4) samples.csv: sample metadata file used to register Internationall Generic Sample Numbers (IGSNs), (5) flmd.csv: file level metadata file, and (6) dd.csv: data dictionary file. This work was supported by the Watershed Function Science Focus Area at Lawrence Berkeley National Laboratory funded by the US Department of Energy, Office of Science, Biological and Environmental Research under Contract No. DE-AC02-05CH11231.

2018 NEON and 2025 CHESS Campaigns↗