Results for “community evolution” — Page 6

NASA NTRS2001

Registered File Support for Critical Operations Files at (Space Infrared Telescope Facility) SIRTF

The SIRTF Science Center's (SSC) Science Operations System (SOS) has to contend with nearly one hundred critical operations files via comprehensive file management services. The management is accomplished via the registered file system (otherwise known as TFS) which manages these files in a registered file repository composed of a virtual file system accessible via a TFS server and a file registration database. The TFS server provides controlled, reliable, and secure file transfer and storage by registering all file transactions and meta-data in the file registration database. An API is provided for application programs to communicate with TFS servers and the repository. A command line client implementing this API has been developed as a client tool. This paper describes the architecture, current implementation, but more importantly, the evolution of these services based on evolving community use cases and emerging information system technology.

file management services↗

NASA NTRS2013

Scientific Objectives for UV-Visible Astrophysics Investigations: A Summary of Responses by the Community (2012)

Following several recommendations presented by the Astrophysics Decadal Survey 2010 centered around the need to define "a future ultraviolet-optical space capability," on 2012 May 25, NASA issued a Request for Information (RFI) seeking persuasive ultraviolet (UV) and visible wavelength astrophysics science investigations. The goal was to develop a cohesive and compelling set of science objectives that motivate and support the development of the next generation of ultraviolet/visible space astrophysics missions. Responses were due on 10 August 2012 when 34 submissions were received addressing a number of potential science drivers. A UV/visible Mission RFI Workshop was held on 2012 September 20 where each of these submissions was summarized and discussed in the context of each other. We present a scientific analysis of these submissions and presentations and the pursuant measurement capability needs, which could influence ultraviolet/visible technology development plans for the rest of this decade. We also describe the process and requirements leading to the inception of this community RFI, subsequent workshop and the expected evolution of these ideas and concepts for the remainder of this decade.

Galaxies↗

NASA NTRS2014

Scientific Objectives for UV-Visible Astrophysics Investigations: A Summary of Responses by the Community (2012)

Following several recommendations presented by the Astrophysics Decadal Survey 2010 centered around the need to define "a future ultraviolet-optical space capability," on 2012 May 25, NASA issued a Request for Information (RFI) seeking persuasive ultraviolet (UV) and visible wavelength astrophysics science investigations. The goal was to develop a cohesive and compelling set of science objectives that motivate and support the development of the next generation of ultraviolet/visible space astrophysics missions. Responses were due on 10 August 2012 when 34 submissions were received addressing a number of potential science drivers. A UV/visible Mission RFI Workshop was held on 2012 September 20 where each of these submissions was summarized and discussed in the context of each other. We present a scientific analysis of these submissions and presentations and the pursuant measurement capability needs, which could influence ultraviolet/visible technology development plans for the rest of this decade. We also describe the process and requirements leading to the inception of this community RFI, subsequent workshop and the expected evolution of these ideas and concepts for the remainder of this decade.

Astronomical Instrumentation↗

NASA NTRS2013

Scientific Objectives for UV-Visible Astrophysics Investigations: A Summary of Responses by the Community (2012)

Following several recommendations presented by the Astrophysics Decadal Survey 2010 centered around the need to define "a future ultraviolet-optical space capability," on 2012 May 25, NASA issued a Request for Information (RFI) seeking persuasive ultraviolet (UV) and visible wavelength astrophysics science investigations. The goal was to develop a cohesive and compelling set of science objectives that motivate and support the development of the next generation of ultraviolet/visible space astrophysics missions. Responses were due on 10 August 2012 when 34 submissions were received addressing a number of potential science drivers. A UV/visible Mission RFI Workshop was held on 2012 September 20 where each of these submissions was summarized and discussed in the context of each other. We present a scientific analysis of these submissions and presentations and the pursuant measurement capability needs, which could influence ultraviolet/visible technology development plans for the rest of this decade. We also describe the process and requirements leading to the inception of this community RFI, subsequent workshop and the expected evolution of these ideas and concepts for the remainder of this decade.

UV/visible↗

NASA NTRS2012

Scientific Objectives for UV/Visible Astrophysics Investigations: A Summary of Responses by the Community (2012)

Following several recommendations presented by the Astrophysics Decadal Survey 2010 centered around the need to define "a future ultraviolet-optical space capability," on 2012 May 25, NASA issued a Request for Information (RFI) seeking persuasive ultraviolet (UV) and visible wavelength astrophysics science investigations. The goal was to develop a cohesive and compelling set of science objectives that motivate and support the development of the next generation of ultraviolet/visible space astrophysics missions. Responses were due on 10 August 2012 when 34 submissions were received addressing a number of potential science drivers. A UV/visible Mission RFI Workshop was held on 2012 September 20 where each of these submissions was summarized and discussed in the context of each other. We present a scientific analysis of these submissions and presentations and the pursuant measurement capability needs, which could influence ultraviolet/visible technology development plans for the rest of this decade. We also describe the process and requirements leading to the inception of this community RFI, subsequent workshop and the expected evolution of these ideas and concepts for the remainder of this decade.

Conference Summary↗

DOE OSTI2016

Microbial communities for bioprocessing: lessons learned from nature

Microbial bioprocessing has evolved from the use of undefined natural consortia to the construction of synthetic communities tailored to specific processes and bioproducts. This evolution is enabled by recent advances in biotechnology, including cultivation of non-model microbes, metabolic engineering, bioinformatics, and numerical modeling. Equipped with these powerful tools, engineers have designed co-cultures and consortia with an expanded set of capabilities, mainly via ‘bottom-up’ approaches that tether isolates together in culture. We present a brief review of the opportunities, challenges, and recent developments in consortia-based bioprocessing with a focus on lignocellulosic biomass conversion. With improved understanding of microbial community composition and function, we further present a vision to harness defined consortia down-selected from nature via ‘top down’ approaches.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2018

Finding Long Lost Lexell's Comet: The Fate of the First Discovered Near-Earth Object

Jupiter-family Comet D/1770 L1 (Lexell) was the first discovered Near-Earth Object (NEO) and passed the Earth on 1770 July 1 at a recorded distance of 0.015 au. The comet was subsequently lost due to unfavorable observing circumstances during its next apparition followed by a close encounter with Jupiter in 1779. Since then, the fate of D/Lexell has attracted interest from the scientific community, and now we revisit this long-standing question. We investigate the dynamical evolution of D/Lexell based on a set of orbits recalculated using the observations made by Charles Messier, the comet’s discoverer, and find that there is a 98% chance that D/Lexell remains in the solar system by the year of 2000. This finding remains valid even if a moderate non-gravitational effect is imposed. Messier’s observations also suggest that the comet is one of the largest known near-Earth comets, with a nucleus of ≳10 km in diameter. This implies that the comet should have been detected by contemporary NEO surveys regardless of its activity level if it has remained in the inner solar system. We identify asteroid 2010 JL{sub 33} as a possible descendant of D/Lexell, with a 0.8% probability of chance alignment, but a direct orbital linkage of the two bodies has not been successfully accomplished. We also use the recalculated orbit to investigate the meteors potentially originating from D/Lexell. While no associated meteors have been unambiguously detected, we show that meteor observations can be used to better constrain the orbit of D/Lexell despite the comet being long lost.

79 ASTRONOMY AND ASTROPHYSICS↗

NASA NTRSDate not supplied

NASA’s Safety, Reliability, and Mission Assurance Digital Future

The evolution from “document-centric” to “data-centric” and “model-centric” information leveraging structured data and model-based approaches is at the heart of digital engineering transformational efforts underway across industry and government. It is these approaches that pave the way for data lakes, Authoritative Sources of Truth (ASOTs), and systems- of-systems interoperability and the corresponding transformational benefits thereof. Such benefits include increased data availability, data access equity, data traceability, real-time analytics, batch analytics, and (most importantly) acceleration of the time-to-value and time-to-insights associated with engineering products and analyses. The longer-term benefits of reusability, customization and traceability are even more promising. For Safety and Mission Assurance (SMA), and Mission Success (SMS) activities; realization of such benefits is essential to provide engineers and analysts alike vital information when needed to support critical decision making throughout the entire life cycle. The SMA community often operate in parallel with engineering activities, for which information exchange with relevant context is paramount. Far too often, such information lags key decision points and/or is absent of the robust, integrated, knowledge needed, given inherent barriers associated with traditional document-centric means to data sharing, analysis, and reporting. This paper provides an overview of how NASA’s Office of Safety and Mission Assurance (OSMA) is evolving its policies, standards, guidance, and training to transform to eliminate such barriers, thus realizing the benefits emerging in this new digital era. A roadmap for achieving this digital future is presented along with key building blocks involving use and implementation of concepts such as: Objectives-Hierarchies, Objective-Driven Requirements, Accepted Standards, Safety and Assurance Cases, data digitization (i.e., ontologies, structured data, and model-centric data), FAIR (Findable, Accessible, Interoperable, & Reusable) and/or FAIRUST (Findable, Accessible, Interoperable, Reusable, Understandable, Secure, and Trusted) principles [1]. This paper also describes how OSMA, leveraging the Agency’s overall commitment to Digital Transformation (DT), is using the power of Policy, “Digital” Domain representation, Product Evolution, and Community Outreach and Engagement as part of a strategic vision and roadmap to evolve and transform its SMA organizations to become better able to serve its stakeholders and customers. Future publications will elaborate on these building blocks and deeper concepts.

Authoritative Source of Truth (ASOT),↗

DOE OSTI2021

A genomic data resource for predicting antimicrobial resistance from laboratory-derived antimicrobial susceptibility phenotypes

Antimicrobial resistance (AMR) is a major global health threat that affects millions of people each year. Funding agencies worldwide and the global research community have expended considerable capital and effort tracking the evolution and spread of AMR by isolating and sequencing bacterial strains and performing antimicrobial susceptibility testing (AST). For the last several years, we have been capturing these efforts by curating data from the literature and data resources and building a set of assembled bacterial genome sequences that are paired with laboratory-derived AST data. This collection currently contains AST data for over 67 000 genomes encompassing approximately 40 genera and over 100 species. In this paper, we describe the characteristics of this collection, highlighting areas where sampling is comparatively deep or shallow, and showing areas where attention is needed from the research community to improve sampling and tracking efforts. In addition to using the data to track the evolution and spread of AMR, it also serves as a useful starting point for building machine learning models for predicting AMR phenotypes. Further, we demonstrate this by describing two machine learning models that are built from the entire dataset to show where the predictive power is comparatively high or low.

59 BASIC BIOLOGICAL SCIENCES↗

NASA NTRS2018

The Importance of User Feedback in Sustaining Trusted Repositories

The NASA Earth Observation System Data and Information System (EOSDIS) has been operating since 1994 and is serving a global user community with well-managed Earth science data in a variety of scientific disciplines. EOSDIS processes, archives and distributes data and information products resulting from spaceborne and airborne instruments as well as in situ measurements from field campaigns. The Earth Science Data and Information System (ESDIS) Project at the NASA Goddard Space Flight Center manages EOSDIS with its 12 Distributed Active Archive Centers (DAACs) located across the United States. During the entire life of EOSDIS, the ESDIS Project and the DAACs have deployed many different mechanisms for user feedback, which have proven extremely valuable to their evolution and performance in their service to user communities. Some of the inputs from our user groups have resulted in fundamental changes in the architecture, design and operations of EOSDIS, while others have provided novel ideas for incremental changes. The EOSDIS DAACs have User Working Groups (UWGs) that represent broad user communities in the Earth science disciplines served by the DAACs. The UWGs meet periodically to assess and provide feedback on dataset and service priorities. As regular users of the data and services of the DAAC and experts in the scientific disciplines, the UWG members provide valuable inputs for planning and prioritizing the services, as well as addition of new datasets, for the benefit of the community. The EOSDIS is evaluated annually through an independently administered survey of its users resulting in the American Customer Satisfaction Index (ACSI). The survey provides an ACSI score as well as free-text suggestions from users, which are also helpful in making specific system improvements. In addition, each of the DAACs has a user services group that address on-going requests for help and other comments from users. The ESDIS Project has established a mechanism through the "earthdata" website (http://earthdata.nasa.gov) for users to provide feedback of any kind and these questions/comments are routed to the appropriate individuals in the Project or the DAACs. These various forms of receiving user feedback and responding to them continue to be extremely valuable in evolving and sustaining our Earth Science repository.

Behnke, Jeanne↗

DOE OSTI2024

Exploring Ecological, Morphological, and Environmental Controls on Coastal Foredune Evolution at Annual Scales Using a Process-Based Model

Coastal communities commonly rely upon foredunes as the first line of defense against sea-level rise and storms, thus requiring management guidance to optimize their protective services. Here, we use the AeoLiS model to simulate wind-driven accretion and wave-driven erosion patterns on foredunes with different morphologies and ecological properties under modern-day conditions. Additional sets of model runs mimic potential future climate changes to inform how both morphological and ecological properties may have differing contributions to net dune changes under evolving environmental forcing. This exploratory study, applied to represent the morphological, environmental, and ecological conditions of the northern Outer Banks, North Carolina, USA, finds that dunes experiencing minimal wave collision have similar net volumetric growth rates regardless of beach morphology, though the location and density of vegetation influence sediment deposition patterns across the dune profile. The model indicates that high-density, uniform planting strategies trap sediment close to the dune toe, whereas low-density plantings may allow for accretion across a broader extent of the dune face. The initial beach and dune shape generally plays a larger role in annual-scale dune evolution than vegetation cover. For steeper beach slopes and/or low dune toe elevations, the model generally predicts wave-driven dune erosion at the annual scale.

Environmental Sciences & Ecology↗

DOE OSTI2022

The Evolution of the Peridynamics Co-Authorship Network

We report peridynamics is a relatively new field in continuum mechanics that has developed over the past 20 years. This paper studies the evolution of collaborations in the field of peridynamics since its inception using social network analysis. For this purpose, we construct a network for each year from 2000 to 2019 describing co-authorship between scientists in peridynamics. In these networks, each node represents a scientist and each link connects two co-authoring scientists with a link weight representing the frequency and strength of their collaboration; each network as a whole can be thought of as a graph representation of the peridynamics community for the given year. By constructing a network for each year, we are able to analyze the evolution of the network in time and discuss the implications of this evolution for the peridynamics community. Our study demonstrates that the peridynamics community has been growing exponentially in size in recent years. Centrality metrics are also used to identify the most collaborative scientists in the community. Moreover, we compute link recommendations based on both elevating a scientist’s position in the network with respect to certain centrality metrics or closing structural holes in the network identified with persistent homology. We further extend the analysis to higher-order networks whose nodes represent groups of scientists in the community and whose links connect collaborating groups. In some sense, our work studies the past, present, and future of the peridynamics community.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2024

Origin of biogeographically distinct ecotypes during laboratory evolution

Resource partitioning is central to the incredible productivity of microbial communities, including gigatons in annual methane emissions through syntrophic interactions. Previous work revealed how a sulfate reducer (Desulfovibrio vulgaris, Dv) and a methanogen (Methanococcus maripaludis, Mm) underwent evolutionary diversification in a planktonic context, improving stability, cooperativity, and productivity within 300-1000 generations. Here, we show that mutations in just 15 Dv and 7 Mm genes within a minimal assemblage of this evolved community gave rise to co-existing ecotypes that were spatially enriched within a few days of culturing in a fluidized bed reactor. The spatially segregated communities partitioned resources in the simulated subsurface environment, with greater lactate utilization by attached Dv but partial utilization of resulting H 2 by low affinity hydrogenases of Mm in the same phase. The unutilized H 2 was scavenged by high affinity hydrogenases of planktonic Mm, producing copious amounts of methane. Our findings show how a few mutations can drive resource partitioning amongst niche-differentiated ecotypes, whose interplay synergistically improves productivity of the entire mutualistic community.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2019

Climate-driven reduction of genetic variation in plant phenology alters soil communities and nutrient pools

Here, we examined the hypothesis that climate–driven evolution of plant traits will influence associated soil microbiomes and ecosystem function across the landscape. Using a foundation tree species, Populus angustifolia , observational and common garden approaches, and a base population genetic collection that spans 17 river systems in the western United States, from AZ to MT, we show that (a) as mean annual temperature (MAT) increases, genetic and phenotypic variation for bud break phenology decline; (b) soil microbiomes, soil nitrogen (N), and soil carbon (C) vary in response to MAT and conditioning by trees; and (c) with losses of genetic variation due to warming, population–level regulation of community and ecosystem functions strengthen. These results demonstrate a relationship between the potential evolutionary response of populations and subsequent shifts in ecosystem function along a large temperature gradient.

59 BASIC BIOLOGICAL SCIENCES↗

NASA NTRS1996

Achieving cost reductions in EOSDIS operations through technology evolution

The earth observing system (EOS) data information system (EOSDIS) mission includes the cost-effective management and distribution of large amounts of data to the earth science community. The effect of the introduction of new information system technologies on the evolution of EOSDIS is considered. One of the steps taken by NASA to enable the introduction of new information system technologies into the EOSDIS is the funding of technology development through prototyping. Recent and ongoing prototyping efforts and their potential impact on the performance and cost-effectiveness of the EOSDIS are discussed. The technology evolution process as it related to the effective operation of EOSDIS is described, and methods are identified for the support of the transfer of relevant technology to EOSDIS components.

Newsome, Penny↗

DOE OSTI2018

Adaptation limits ecological diversification and promotes ecological tinkering during the competition for substitutable resources

Microbial communities can evade competitive exclusion by diversifying into distinct ecological niches. This spontaneous diversification often occurs amid a backdrop of directional selection on other microbial traits, where competitive exclusion would normally apply. Yet despite their empirical relevance, little is known about how diversification and directional selection combine to determine the ecological and evolutionary dynamics within a community. To address this gap, we introduce a simple, empirically motivated model of eco-evolutionary feedback based on the competition for substitutable resources. Individuals acquire heritable mutations that alter resource uptake rates, either by shifting metabolic effort between resources or by increasing the overall growth rate. While these constitutively beneficial mutations are trivially favored to invade, we show that the accumulated fitness differences can dramatically influence the ecological structure and evolutionary dynamics that emerge within the community. Competition between ecological diversification and ongoing fitness evolution leads to a state of diversification–selection balance, in which the number of extant ecotypes can be pinned below the maximum capacity of the ecosystem, while the ecotype frequencies and genealogies are constantly in flux. Interestingly, we find that fitness differences generate emergent selection pressures to shift metabolic effort toward resources with lower effective competition, even in saturated ecosystems. Here, we argue that similar dynamical features should emerge in a wide range of models with a mixture of directional and diversifying selection.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2017

CHEMICAL EVOLUTION LIBRARY FOR GALAXY FORMATION SIMULATION

We have developed a software library for chemical evolution simulations of galaxy formation under the simple stellar population (SSP) approximation. In this library, all of the necessary components concerning chemical evolution, such as initial mass functions, stellar lifetimes, yields from Type II and Type Ia supernovae, asymptotic giant branch stars, and neutron star mergers, are compiled from the literature. Various models are pre-implemented in this library so that users can choose their favorite combination of models. Subroutines of this library return released energy and masses of individual elements depending on a given event type. Since the redistribution manner of these quantities depends on the implementation of users’ simulation codes, this library leaves it up to the simulation code. As demonstrations, we carry out both one-zone, closed-box simulations and 3D simulations of a collapsing gas and dark matter system using this library. In these simulations, we can easily compare the impact of individual models on the chemical evolution of galaxies, just by changing the control flags and parameters of the library. Since this library only deals with the part of chemical evolution under the SSP approximation, any simulation codes that use the SSP approximation—namely, particle-base and mesh codes, as well as semianalytical models—can use it. This library is named “CELib” after the term “Chemical Evolution Library” and is made available to the community.

79 ASTRONOMY AND ASTROPHYSICS↗

NASA NTRS1981

Microbial ecology of extreme environments: Antarctic dry valley yeasts and growth in substrate limited habitats

The multiple stresses temperature, moisture, and for chemoheterotrophs, sources of carbon and energy of the Dry Valley Antarctica soils allow at best depauperate communities, low in species diversity and population density. The nature of community structure, the operation of biogeochemical cycles, the evolution and mechanisms of adaptation to this habitat are of interest in informing speculations upon life on other planets as well as in modeling the limits of gene life. Yeasts of the Cryptococcus vishniacil complex (Basidiobiastomycetes) are investigated, as the only known indigenes of the most hostile, lichen free, parts of the Dry Valleys. Methods were developed for isolating these yeasts (methods which do not exclude the recovery of other microbiota). The definition of the complex was refined and the importance of nitrogen sources was established as well as substrate competition in fitness to the Dry Valley habitats.

Vishniac, H. S.↗