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NASA NTRS2018

Enabling Experimental Evolution: Multi-Parameter Sensor System Integration into a Culture/Stressor Biofluidics System

Experimental evolution (EE) exposes microbial communities to ecological stressors, simulating dynamics up to near-extinction events. Combined with comparative sequencing and other molecular tools, such data can inform the genetic and other biological mechanisms underlying extremophile adaptation, and other observed effects. Automating this type of experiment using biofluidics can mitigate many traditional obstacles, including delays in assay results and environment adjustment and the need for many replicates. A first-generation device for automating EE procedures, the Automated Adaptive Directed Evolution Chamber (AADEC), was developed at NASA Ames. UV-C radiation was the stressor, an LED-photodiode array measured optical density, magnetic agitation and peristaltic pump systems ensured nutrient availability, and Arduino microcontrollers provided control. Escherichia coli in LB kanamycin media was used for testing and performance verification. A manual laboratory procedure with timed exposure to UV-C was performed to typify tolerance acquisition. Approximately a 106 factor increase in survival ratio was recorded over multiple iterations. Currently, a second-generation device is being developed integrating more real-time sensors: redox potential (ORP), indicating available/consumed metabolic energy; dissolved oxygen (DO), indicating aerobic/anaerobic growth; pH, indicating metabolic products; and electrical conductivity (EC), another indicator of metabolic products. The EC sensor system was constructed and calibrated in-house and matched commercial sensors in the required range. A Raspberry Pi computer automated the electrical system, allowing real-time data acquisition. The fluidics card was made of CNC-milled polycarbonate for biocompatibility. Each sensor parameter can also be used as a selection pressure alone or in combination with others to create extreme microbial environments. As a proof of concept, this work demonstrated sensor operation in one pair of growth-sensor chambers. It can be expanded to a multi-chamber system to enable inter-culture comparisons and multi-population studies. The prior Arduino system will be ported to the RPi system. Future stressors to be added include thermal, reactive oxygen species, and varying nutrient availability.

Govinda Raj, Chinmayee↗

NASA NTRS1988

VLSI high speed packet processor

The Goddard Space Flight Center Mission Operations and Data Systems Directorate has developed a packet processor card utilizing semicustom very large scale integration (VLSI) devices, microprocessors, and programmable gate arrays to support the implementation of multichannel telemetry data capture systems. This card will receive synchronized error corrected telemetry transfer frames and output annotated application packets derived from this data. An adaptable format capability is provided by the programmability of three microprocessors while the throughput capability of the packet processor is achieved by a data pipeline consisting of two separate RAM systems controlled by specially designed semicustom VLSI logic.

Grebowsky, Gerald J.↗

NASA NTRS2004

Portable Electromyograph

A portable electronic apparatus records electromyographic (EMG) signals in as many as 16 channels at a sampling rate of 1,024 Hz in each channel. The apparatus (see figure) includes 16 differential EMG electrodes (each electrode corresponding to one channel) with cables and attachment hardware, reference electrodes, an input/output-and-power-adapter unit, a 16-bit analog-to-digital converter, and a hand-held computer that contains a removable 256-MB flash memory card. When all 16 EMG electrodes are in use, full-bandwidth data can be recorded in each channel for as long as 8 hours. The apparatus is powered by a battery and is small enough that it can be carried in a waist pouch. The computer is equipped with a small screen that can be used to display the incoming signals on each channel. Amplitude and time adjustments of this display can be made easily by use of touch buttons on the screen. The user can also set up a data-acquisition schedule to conform to experimental protocols or to manage battery energy and memory efficiently. Once the EMG data have been recorded, the flash memory card is removed from the EMG apparatus and placed in a flash-memory- card-reading external drive unit connected to a personal computer (PC). The PC can then read the data recorded in the 16 channels. Preferably, before further analysis, the data should be stored in the hard drive of the PC. The data files are opened and viewed on the PC by use of special- purpose software. The software for operation of the apparatus resides in a random-access memory (RAM), with backup power supplied by a small internal lithium cell. A backup copy of this software resides on the flash memory card. In the event of loss of both main and backup battery power and consequent loss of this software, the backup copy can be used to restore the RAM copy after power has been restored. Accessories for this device are also available. These include goniometers, accelerometers, foot switches, and force gauges.

De Luca, Gianluca↗

NASA NTRSDate not supplied

Growth Curve Parameterization of Metabolic Activity of Yeast Cells for BioSentinel

The goal of the BioSentinel small satellite payload is to measure the effect of deep space radiation on the growth and metabolic activity of yeast cells. Raw test data is generated by fluidics cards containing yeast cells rehydrated at different periods, with metabolic activity measured by the reduction of alamarBlue. Each card well has a sensor array that measures the amount of red, green, and infrared light transmitted through the yeast culture. This illumination data is then converted to absorbance values, which are further converted into concentrations. The ultimate objective is to convert these concentrations into biologically-relevant metrics that can be compared against one another to determine changes due to differential radiation exposure. Beginning with IR absorbance data (corresponding to cell density) from ground studies, three parameters from a sigmoidal growth curve were extracted and analyzed: 𝜆 (lag phase), 𝜇 (max growth rate), and A (max cell growth). The data was fit to the Gompertz model of microbial growth using non-linear regression (Minitab), as the fit error was reduced compared to the simpler logistic growth curve. Graphs showed that the data contained a discrepancy (drift) in the lag phase that is attributable to a slow, constant loss of moisture. Correcting this discrepancy by fitting the first 25 hours of the data to a power function and subtracting these values from the absorbance readings obtained a better statistical fit to the growth curve in the lag phase. A power fit was selected over a linear fit because it reflected the effects of constant volume loss. This correction to the BioSentinel data analysis pipeline will enable quantitative statistical analysis of the effect of different levels of deep space radiation on yeast cells. Future work includes automation of drift correction and curve modeling to extract these parameters directly from data.

Growth Curve↗

NASA NTRS2012

Wireless Self-Acquistion of 12-Lead ECG via Android Smart Phone

Researchers at NASA s Johnson Space Center and at Orbital Research, Inc. (a NASA SBIR grant recipient) have recently developed a dry-electrode harness that allows for self-acquisition of resting 12-lead ECGs by minimally trained laypersons. When used in conjunction with commercial wireless (e.g., Bluetooth(TM) or 802.11-enabled) 12-lead ECG devices and custom smart phone-based software, the collected 12-lead ECG data can also immediately be forwarded from any geographic location within cellular range to the user s physician(s) of choice. The system can also be used to immediately forward to central receiving stations 12-lead ECG data collected during space flight or during activities in any remote terrestrial location supported by an internet or cellular phone infrastructure. The main novel aspects of the system are first, the dry-electrode 12-lead ECG harness itself, and second, an accompanying Android(TM) smart phone-based wireless 12-lead ECG capability. The ECG harness nominally employs dry electrodes manufactured by Orbital Research, Inc, recently cleared through the Food and Drug Administration (FDA). However, other dry electrodes that are not yet FDA cleared, for example those recently developed by Nanosonic, Inc as part of another NASA SBIR grant, can also be used. The various advantageous features of the harness include: 1) laypersons can be quickly instructed on its correct use, remotely if necessary; 2) all tangled "leadwire spaghetti" is eliminated, as is the common clinical problem of "leadwire reversal"; 3) all adhesives and disposables are also eliminated, the harness being fully reusable; if multiple individuals intend to use use the same harness, then standard antimicrobial wipes can be employed to sterilize the dry electrodes (and harness surface if needed) between users; 5) padded cushions at the lateral sides of the torso function to press the left arm (LA) and right arm (RA) dry electrodes mounted on the cushions against sideward or downward-rested arms of the subject; 6) sufficient distal placement of the arm electrodes achieves good electrode abutment to the arms without the need for adhesives, straps, bands, bracelets, or gloves; 7) padding over the sternum avoids "tenting" in the V1 through V3 (and, when present, the V3R) electrode positions; 8) easy-to-don, one-piece design with an adjustable, front-side single point of connection and an adjustable shoulder strap; and 9) Lund or "modified Lund" placement of the dry electrodes, the results of which more effectively reproduce results from "standard" 12-lead ECG placements than do results from Mason-Likar placements. The main limitation of the harness is that "one size does not fit all", meaning that an appropriately sized harness (small, medium, large, etc) must be chosen on the basis of an individual's size. To facilitate the use of the harness with inexpensive, commodity-grade cell phones and tablet devices, 12-lead ECG software is also being developed to accompany the harness for wireless use with Android. For this part of the project, NASA has teamed with TopCoder, Inc and the Harvard-affiliated NASA Tournament Lab in sponsoring java-based software programming contests through TopCoder. While ECG signals from the harness can already be wirelessly received and thoroughly processed (locally or remotely) by commercial-grade conventional (as well as advanced) 12-lead ECG software running on Microsoft Windows(TM), the Android-based software, once completed, will "cast a wider net" by allowing for a greater percentage of cell phone owners to participate in inexpensive, store-and-forward recordings of 12-lead ECGs worldwide, including for example Android cell phone users in many remote, third-world locations. At the time of writing, the Android 12-lead ECG software platform consists of a basic but expanding graphical user interface and accompanying software that: 1) wirelessly receives the 12-lead ECG data stream from a Bluetooth-based, FDA-cleared 12-leaCG device attached to the harness; 2) locally stores the same data in binary format to the SD card on the Android cell phone; and 3) makes the data stream in available in real time, for now to TopCoder's java programming contestants.

Schlegel, Todd T.↗

NASA NTRS1987

SINDA-NASTRAN interfacing program theoretical description and user's manual

The task of converting SINDA finite difference thermal model temperature results into NASTRAN finite element model thermal loads can be very labor intensive if there is not one node-to-one element, or systematic node-to-element. correlation between models. This paper describes the SINDA-NASTRAN Interfacing Program (SNIP), a FORTRAN computer code that generates NASTRAN structural model thermal load cards given by SINDA (or similar thermal model) temperature results and thermal model geometric data. SNIP generates NASTRAN thermal load cards for NASTRAN plate, shell, bar, and beam elements. The paper describes the interfacing procedures used by SNIP, and discusses set-up and operation of the program. Sample cases are included to demonstrate use of the program and show its performance under a variety of conditions. SNIP can provide structural model thermal loads that accurately reflect thermal model results while reducing the time required to interface thermal and structural models when compared to other methods.

Winegar, Steven R.↗

NASA NTRS1978

Flying-hot-wire study of two-dimensional mean flow past an NACA 4412 airfoil at maximum lift

Hot-wire measurements have been made in the boundary layer, the separated region, and the near wake for flow past an NACA 4412 airfoil at maximum lift. The Reynolds number based on chord was about 1,500,000. The main instrumentation was a hot-wire probe mounted on the end of a rotating arm. A digital computer was used to control synchronized sampling of hot-wire data at closely spaced points along the probe arc. Ensembles of data were obtained at several thousand locations in the flow field. The data include intermittency, two components of mean velocity, and twelve mean values for double, triple, and quadruple products of two velocity fluctuations. The data are available on punched cards in raw form and also after use of smoothing and interpolation routines to obtain values on a fine rectangular grid aligned with the airfoil chord. The data are displayed in the paper as contour plots.

Coles, D.↗

NASA NTRS1979

Program documentation for the space environment test division post-test data reduction program (GNFLEX)

The Space Environment Test Division Post-Test Data Reduction Program processes data from test history tapes generated on the Flexible Data System in the Space Environment Simulation Laboratory at the National Aeronautics and Space Administration/Lyndon B. Johnson Space Center. The program reads the tape's data base records to retrieve the item directory conversion file, the item capture file and the process link file to determine the active parameters. The desired parameter names are read in by lead cards after which the periodic data records are read to determine parameter data level changes. The data is considered to be compressed rather than full sample rate. Tabulations and/or a tape for generating plots may be output.

Jones, L. D.↗

NASA NTRS2014

SpaceCube v2.0 Space Flight Hybrid Reconfigurable Data Processing System

This paper details the design architecture, design methodology, and the advantages of the SpaceCube v2.0 high performance data processing system for space applications. The purpose in building the SpaceCube v2.0 system is to create a superior high performance, reconfigurable, hybrid data processing system that can be used in a multitude of applications including those that require a radiation hardened and reliable solution. The SpaceCube v2.0 system leverages seven years of board design, avionics systems design, and space flight application experiences. This paper shows how SpaceCube v2.0 solves the increasing computing demands of space data processing applications that cannot be attained with a standalone processor approach.The main objective during the design stage is to find a good system balance between power, size, reliability, cost, and data processing capability. These design variables directly impact each other, and it is important to understand how to achieve a suitable balance. This paper will detail how these critical design factors were managed including the construction of an Engineering Model for an experiment on the International Space Station to test out design concepts. We will describe the designs for the processor card, power card, backplane, and a mission unique interface card. The mechanical design for the box will also be detailed since it is critical in meeting the stringent thermal and structural requirements imposed by the processing system. In addition, the mechanical design uses advanced thermal conduction techniques to solve the internal thermal challenges.The SpaceCube v2.0 processing system is based on an extended version of the 3U cPCI standard form factor where each card is 190mm x 100mm in size The typical power draw of the processor card is 8 to 10W and scales with application complexity. The SpaceCube v2.0 data processing card features two Xilinx Virtex-5 QV Field Programmable Gate Arrays (FPGA), eight memory modules, a monitor FPGA with analog monitoring, Ethernet, configurable interconnect to the Xilinx FPGAs including gigabit transceivers, and the necessary voltage regulation. The processor board uses a back-to-back design methodology for common parts that maximizes the board real estate available. This paper will show how to meet the IPC 6012B Class 3A standard with a 22-layer board that has two column grid array devices with 1.0mm pitch. All layout trades such as stack-up options, via selection, and FPGA signal breakout will be discussed with feature size results. The overall board design process will be discussed including parts selection, circuit design, proper signal termination, layout placement and route planning, signal integrity design and verification, and power integrity results. The radiation mitigation techniques will also be detailed including configuration scrubbing options, Xilinx circuit mitigation and FPGA functional monitoring, and memory protection.Finally, this paper will describe how this system is being used to solve the extreme challenges of a robotic satellite servicing mission where typical space-rated processors are not sufficient enough to meet the intensive data processing requirements. The SpaceCube v2.0 is the main payload control computer and is required to control critical subsystems such as autonomous rendezvous and docking using a suite of vision sensors and object avoidance when controlling two robotic arms.

Xilinx FPGA↗

NASA NTRS1973

A method for transferring NASTRAN data between dissimilar computers

The NASTRAN computer program is capable of executing on three different types of computers: (1) the CDC 6000 series, (2) the IBM 360-370 series, and (3) the Univac 1100 series. A typical activity requiring transfer of data between dissimilar computers is the analysis of a large structure such as the space shuttle by substructuring. Models of portions of the vehicle which have been analyzed by subcontractors using their computers must be integrated into a model of the complete structure by the prime contractor on his computer. Presently the transfer of NASTRAN matrices or tables between two different types of computers is accomplished by punched cards or a magnetic tape containing card images. These methods of data transfer do not satisfy the requirements for intercomputer data transfer associated with a substructuring activity. To provide a more satisfactory transfer of data, two new programs, RDUSER and WRTUSER, were created.

Rogers, J. L., Jr.↗

NASA NTRS1980

A computer program for the generation of logic networks from task chart data

The Network Generation Program (NETGEN), which creates logic networks from task chart data is presented. NETGEN is written in CDC FORTRAN IV (Extended) and runs in a batch mode on the CDC 6000 and CYBER 170 series computers. Data is input via a two-card format and contains information regarding the specific tasks in a project. From this data, NETGEN constructs a logic network of related activities with each activity having unique predecessor and successor nodes, activity duration, descriptions, etc. NETGEN then prepares this data on two files that can be used in the Project Planning Analysis and Reporting System Batch Network Scheduling program and the EZPERT graphics program.

Herbert, H. E.↗

NASA NTRS2012

DDS-Suite - A Dynamic Data Acquisition, Processing, and Analysis System for Wind Tunnel Testing

Wind Tunnels have optimized their steady-state data systems for acquisition and analysis and even implemented large dynamic-data acquisition systems, however development of near real-time processing and analysis tools for dynamic-data have lagged. DDS-Suite is a set of tools used to acquire, process, and analyze large amounts of dynamic data. Each phase of the testing process: acquisition, processing, and analysis are handled by separate components so that bottlenecks in one phase of the process do not affect the other, leading to a robust system. DDS-Suite is capable of acquiring 672 channels of dynamic data at rate of 275 MB / s. More than 300 channels of the system use 24-bit analog-to-digital cards and are capable of producing data with less than 0.01 of phase difference at 1 kHz. System architecture, design philosophy, and examples of use during NASA Constellation and Fundamental Aerodynamic tests are discussed.

Burnside, Jathan J.↗

NASA NTRS2010

JSC Wireless Sensor Network Update

Sensor nodes composed of three basic components... radio module: COTS radio module implementing standardized WSN protocol; treated as WSN modem by main board main board: contains application processor (TI MSP430 microcontroller), memory, power supply; responsible for sensor data acquisition, pre-processing, and task scheduling; re-used in every application with growing library of embedded C code sensor card: contains application-specific sensors, data conditioning hardware, and any advanced hardware not built into main board (DSPs, faster A/D, etc.); requires (re-) development for each application.

Wagner, Robert↗

NASA NTRS1961

Star Catalogs on Punched Cards and Magnetic Tape

In connection with the calibration of the Minitrack satellite tracking stations, the Goddard Space Flight Center has had the contents of a number of star catalogs put on punched cards and magnetic tape. This report discusses the plate data reduction procedures, briefly describes the information on the punched cards and magnetic tape, and calls attention to other applications of the card and tape star catalogs. The Goddard Space Flight Center has offered to prepare duplicate catalogs for qualified organizations.

Berbert, J. H.↗

NASA NTRS1983

A new method for generating and maintaining rigid formats in NASTRAN

A new method for generating and updating Rigid Formats in NASTRAN is discussed. The heart of this method is a Rigid Format data base that is in card-image format and that can therefore be easily maintained by the use of standard text editors. Each Rigid Format entry in this data base will contain the Direct Matrix Abstraction Program (DMAP) for that Rigid Format along with the related restart, subset and substructure control tables. NASTRAN will read this data base directly in every NASTRAN run and perform the necessary transformations to allow the DMAP to be processed and compiled by the NASTRAN executive. This approach will permit Rigid Formats to be changed without unnecessary compilations and relinking of NASTRAN. Furthermore, this approach will also make it very easy for users to make permanent changes to existing Rigid Formats as well as to generate their own Rigid Formats. This new method will be incorporated in a future release of the public version of NASTRAN.

Pamidi, P. R.↗

NASA NTRS2003

Recovery of the Space Shuttle Columbia Avionics

Lessons Learned: a) Avionics data can playa critical role in the investigation of a "close call" or accident. b) Avionics designers should think about the role their systems might play in an investigation. c) Know your data, down to the bit level. d) Know your spacecraft - follow the data. e) Internal placement of circuit cards can affect their survivability. f) Think about how to reconstruct nonvolatile memory (e.g. serialize IC's, etc.) g) Use of external assets can aid in extracting data from avionics.

Hames, Kevin L.↗

NASA NTRS1991

Interface Circuit For Printer Port

Electronic circuit, called printer-port interface circuit (PPI) developed to overcome certain disadvantages of previous methods for connecting IBM PC or PC-compatible computer to other equipment. Has both reading and writing modes of operation. Very simple, requiring only six integrated circuits. Provides for moderately fast rates of transfer of data and uses existing unmodified circuit card in IBM PC. When used with appropriate software, circuit converts printer port on IBM PC, XT, AT, or compatible personal computer to general purpose, 8-bit-data, 16-bit address bus that connects to multitude of devices.

Tucker, Jerry H.↗

NASA NTRS1974

Atmospheric transmission computer program CP

A computer program is described which allows for calculation of the effects of carbon dioxide, water vapor, methane, ozone, carbon monoxide, and nitrous oxide on earth resources remote sensing techniques. A flow chart of the program and operating instructions are provided. Comparisons are made between the atmospheric transmission obtained from laboratory and spacecraft spectrometer data and that obtained from a computer prediction using a model atmosphere and radiosonde data. Limitations of the model atmosphere are discussed. The computer program listings, input card formats, and sample runs for both radiosonde data and laboratory data are included.

Pitts, D. E.↗