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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 109 records · Page 6

IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes

The Integrated Microbial Genomes & Microbiomes system v.5.0 (IMG/M: https://img.jgi.doe.gov/m/) contains annotated datasets categorized into: archaea, bacteria, eukarya, plasmids, viruses, genome fragments, metagenomes, cell enrichments, single particle sorts, and metatranscriptomes. Source datasets include those generated by the DOE's Joint Genome Institute (JGI), submitted by external scientists, or collected from public sequence data archives such as NCBI. All submissions are typically processed through the IMG annotation pipeline and then loaded into the IMG data warehouse. IMG's web user interface provides a variety of analytical and visualization tools for comparative analysis of isolate genomes and metagenomes in IMG. IMG/M allows open access to all public genomes in the IMG data warehouse, while its expert review (ER) system (IMG/MER: https://img.jgi.doe.gov/mer/) enabled registered users to access their private genomes and to store their private datasets in workspace for sharing and for further analysis. IMG/M data content has increased by 60% since the last report published in the 2017 NAR Database Issue. IMG/M v.5.0 has a new and more powerful genome search feature, new statistical tools, and supports metagenome binning.

59 BASIC BIOLOGICAL SCIENCES↗

Streamline-Based Time-Lapse-Seismic-Data Integration Incorporating Pressure and Saturation Effects

In this paper, we present an efficient history-matching technique that simultaneously integrates 4D repeat seismic surveys with well-production data. This approach is particularly well-suited for the calibration of the reservoir properties of high-resolution geologic models because the seismic data are a really dense but sparse in time, whereas the production data are finely sampled in time but spatially averaged. The joint history matching is performed by use of streamline-based sensitivities derived from either finite-difference or streamline-based flow simulation. For the most part, earlier approaches have focused on the role of saturation changes, but the effects of pressure have largely been ignored. Here, we present a streamline-based semianalytic approach for computing model-parameter sensitivities, accounting for both pressure and saturation effects. The novelty of the method lies in the semianalytic sensitivity computations, making it computationally efficient for high-resolution geologic models. The approach is implemented by use of a finite-difference simulator incorporating the detailed physics. Its efficacy is demonstrated by use of both synthetic and field applications. Lastly, for both the synthetic and the field cases, the advantages of incorporating the time-lapse variations are clear, seen through the improved estimation of the permeability distribution, the pressure profile, the evolution of the fluid saturation, and the swept volumes.

58 GEOSCIENCES↗

A Framework to Demonstrate a DNP3 Interface With a CIM-Based Data Integration Platform: Preprint

The contemporary electrical grid is characterized by its complexity and abundance of data. A control-rich environment supported by information and communication technologies within an Advanced Distribution Management System (ADMS) presents a viable and cost-effective option for utility companies aiming to implement advanced real-time analytical schemes for monitoring and remotely controlling distribution feeders. Modular platform-based approaches to distribution operations require a structured framework for acquiring field device measurements, performing analytics, converting the setpoint to the correct protocol, and sending it on the appropriate communications network to the field devices. We present the development and deployment of an application service to integrate an open-source standardsbased platform with an ADMS test bed with field devices using the Distributed Network Protocol (DNP3) for data exchange. The step-by-step procedure for establishing the DNP3-Master service on an open-source distribution platform is outlined, comprehensively explaining the Master setup process. Moreover, sample use case results highlight the capabilities of the DNP3- Master service setup. Results demonstrate the scalability and configurability of the DNP3-Master service, making it adaptable for integration with other relevant applications, thus providing potential opportunities for real-world field trials and real-time assessments.

ADMS↗

Abridged spectral matrix inversion: parametric fitting of X-ray fluorescence spectra following integrative data reduction

Recent improvements in both X-ray detectors and readout speeds have led to a substantial increase in the volume of X-ray fluorescence data being produced at synchrotron facilities. This in turn results in increased challenges associated with processing and fitting such data, both temporally and computationally. Herein an abridging approach is described that both reduces and partially integrates X-ray fluorescence (XRF) data sets to obtain a fivefold total improvement in processing time with negligible decrease in quality of fitting. The approach is demonstrated using linear least-squares matrix inversion on XRF data with strongly overlapping fluorescent peaks. This approach is applicable to any type of linear algebra based fitting algorithm to fit spectra containing overlapping signals wherein the spectra also contain unimportant (non-characteristic) regions which add little (or no) weight to fitted values, e.g. energy regions in XRF spectra that contain little or no peak information.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species

The correlation of phenotypic outcomes with genetic variation and environmental factors is a core pursuit in biology and biomedicine. Numerous challenges impede our progress: patient phenotypes may not match known diseases, candidate variants may be in genes that have not been characterized, model organisms may not recapitulate human or veterinary diseases, filling evolutionary gaps is difficult, and many resources must be queried to find potentially significant genotype-phenotype associations. Nonhuman organisms have proven instrumental in revealing biological mechanisms. Advanced informatics tools can identify phenotypically relevant disease models in research and diagnostic contexts. Large-scale integration of model organism and clinical research data can provide a breadth of knowledge not available from individual sources and can provide contextualization of data back to these sources. The Monarch Initiative (monarchinitiative.org) is a collaborative, open science effort that aims to semantically integrate genotype-phenotype data from many species and sources in order to support precision medicine, disease modeling, and mechanistic exploration. Our integrated knowledge graph, analytic tools, and web services enable diverse users to explore relationships between phenotypes and genotypes across species.

59 BASIC BIOLOGICAL SCIENCES↗

Accelerating Nuclear-Integrated Data Centers in the USA: SWOT Analysis, Power-Thermal Management Strategies, and Industrial-Scale Demonstration and Potential Deployment

Driven by the growth in digital services, cloud computing, AI, and manufacturing, data centers face rising energy demands that challenge traditional power sources and cooling efficiency. This study explores using nuclear power to meet these demands, focusing on accelerated reactor technology deployment and highlighting needs such as N+1/N+2 power supplies and integrated power-thermal management. A SWOT analysis addresses grid connectivity, reactors, and site selection, particularly DOE sites. Reactor technology demonstration and deployment could be accelerated by leveraging test facilities such as MARVEL, MAGNET, TED, FAS, DOME, LOTUS, ATR, Energy System Proving Grounds, and upcoming Energy Launch Pads, along with modeling and simulation tools such as RELAP5, MOOSE, VERA, RAVEN, and FORCE. The potential power and thermal management options, including various cooling technologies, waste-heat utilization, and an industrial-scale demonstration plan, aim to accelerate the integration of nuclear power and data centers in the USA, while emphasizing community and stakeholder engagement and synergistic efforts.

21 - SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLAN↗

Velo and REXAN - Integrated Data Management and High Speed Analysis for Experimental Facilities

The Chemical Imaging Initiative at the Pacific Northwest National Laboratory (PNNL) is creating a ‘Rapid Experimental Analysis’ (REXAN) Framework, based on the concept of reusable component libraries. REXAN allows developers to quickly compose and customize high throughput analysis pipelines for a range of experiments, as well as supporting the creation of multi-modal analysis pipelines. In addition, PNNL has coupled REXAN with its collaborative data management and analysis environment Velo to create an easy to use data management and analysis environments for experimental facilities. This paper will discuss the benefits of Velo and REXAN in the context of three examples: PNNL High Resolution Mass Spectrometry - reducing analysis times from hours to seconds, and enabling the analysis of much larger data samples (100KB to 40GB) at the same time · ALS X-Ray tomography - reducing analysis times of combined STXM and EM data collected at the ALS from weeks to minutes, decreasing manual work and increasing data volumes that can be analysed in a single step ·Multi-modal nano-scale analysis of STXM and TEM data - providing a semi automated process for particle detection The creation of REXAN has significantly shortened the development time for these analysis pipelines. The integration of Velo and REXAN has significantly increased the scientific productivity of the instruments and their users by creating easy to use data management and analysis environments with greatly reduced analysis times and improved analysis capabilities.

Kleese van Dam, Kerstin↗

Working Group on Virtual Data Integration

This report is the outcome of a workshop commissioned by the U.S. Department of Energy’s (DOE) Climate and Environmental Sciences Division (CESD) to examine current and future data infrastructure requirements foundational for achieving CESD scientific mission goals in advancing a robust, predictive understanding of Earth’s climate and environmental systems.

54 ENVIRONMENTAL SCIENCES↗

Risk-informed Hierarchical Control of Behind-the-Meter DERs with AMI Data Integration (Final Technical Report)

This project addresses several key barriers to implement the next generation demand response applications and provides a clear understanding of implementing hierarchical and standalone control using AMI data. Through this program, Eaton has developed and tested a meter-as-a-controller prototype with the help of other partners--- National Renewable Energy Laboratory (NREL), Electric Power Research Institute (EPRI), Pecan St Inc. (PSI), and Delaware Electric Cooperative (DEC). The controller can utilize residential controllable loads such as heating, ventilation, and air conditioner (HVAC), electric water heater and distributed energy resources like solar PV and battery energy storage systems for off-setting the demand that is required from the grid, thus providing reliable grid-services for demand reduction or peak shaving. The controller is also capable of coordinating the resources of the premises for better management and energy efficiency while meeting the comfort bound of the premises owner as quality-of-service. The development has been demonstrated in a three virtual-home setup at system performance lab of NREL with real appliances (HVAC, electric water heater, solar PV, and battery). The technology has also been proved through laboratory and field demonstration with successful interconnectivity (e.g., end-to-end communication and data exchange) between the residential appliances and utility through the RF network at Delaware Electric Co-op (DEC) in Delaware.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Using machine learning and artificial intelligence to improve model-data integrated earth system model predictions of water and carbon cycle extremes

The research proposed here focuses on improving the predictive power of the land component of earth system models (ESMs) using (1) model-data fusion enabled by machine learning (ML) and artificial intelligence (AI), (2) predictive modeling through the combination of ML, AI, and big-data (comprising both model output and observations), and (3) insight of ESM structure and process mechanisms gleaned from complex data using ML and AI.

54 ENVIRONMENTAL SCIENCES↗

High-frequency Data Integration for Landscape Model Calibration of Carbon Fluxes Across Diverse Tidal Marshes

Terrestrial Aquatic Interfaces (TAIs), and tidal wetlands in particular, store large amounts of carbon yet are not well represented in Earth System Models (ESMs). Predictions of carbon cycling and greenhouse gas (GHG) emissions in tidal wetlands are highly uncertain. Eddy covariance (EC) towers provide ecosystem-scale GHG flux data at a temporal resolution (every 30min) that is helpful for parameterizing and improving mechanistic realism in ESMs. We propose to use a network of eddy covariance towers and standardized ancillary data streams, along with mesocosm experiments and statistical analyses, across diverse tidal wetlands of North America to develop and improve biogeochemical modeling at the TAI. Our overarching objective is to improve understanding and process-based modeling of gross primary productivity (GPP) and CH4 emission responses, both non-linear and asynchronous, to stressors including plant inundation, disturbance, salinity and nitrogen loading.

54 ENVIRONMENTAL SCIENCES↗

The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species

In biology and biomedicine, relating phenotypic outcomes with genetic variation and environmental factors remains a challenge: patient phenotypes may not match known diseases, candidate variants may be in genes that haven’t been characterized, research organisms may not recapitulate human or veterinary diseases, environmental factors affecting disease outcomes are unknown or undocumented, and many resources must be queried to find potentially significant phenotypic associations. The Monarch Initiative (https://monarchinitiative.org) integrates information on genes, variants, genotypes, phenotypes and diseases in a variety of species, and allows powerful ontology-based search. We develop many widely adopted ontologies that together enable sophisticated computational analysis, mechanistic discovery and diagnostics of Mendelian diseases. Our algorithms and tools are widely used to identify animal models of human disease through phenotypic similarity, for differential diagnostics and to facilitate translational research. Launched in 2015, Monarch has grown with regards to data (new organisms, more sources, better modeling); new API and standards; ontologies (new Mondo unified disease ontology, improvements to ontologies such as HPO and uPheno); user interface (a redesigned website); and community development. Monarch data, algorithms and tools are being used and extended by resources such as GA4GH and NCATS Translator, among others, to aid mechanistic discovery and diagnostics.

59 BASIC BIOLOGICAL SCIENCES↗

PMU Data Integrity Evaluation through Analytics on a Virtual Test-Bed

Power systems are rapidly becoming populated by phasor measurement units (PMUs) in ever increasing numbers. PMUs are critical components of today s energy management systems, designed to enable near real-time wide area monitoring and control of the electric power system. They are able to measure highly accurate bus voltage phasors as well as branch current phasors incident to the buses at which PMUs are equipped. Synchrophasor data is used for applications varying from state estimation, islanding control, identifying outages, voltage stability detection and correction, disturbance recording, and others. However, PMU-measured readings may suffer from errors due to meter biases or drifts, incorrect configurations, or even cyber-attacks. Furthermore, the testing of early PMUs showed a large disparity between the reported values from PMUs provided by different manufacturers, particularly when frequency was off-nominal, during dynamic events, and when harmonic/inter-harmonic content was present. Detection and identification of PMU gross measurement errors are thus crucial in maintaining highly accurate phasor readings throughout the system. In this paper, we present our work in conducting analytics to determine the trustworthiness and worth of the PMU readings collected across an electric network system. By implementing the IEEE 118 bus test case on a virtual test bed (VTB) , we are able to emulate PMU readings (bus voltage and branch current phasors in addition to bus frequencies) under normal and abnormal conditions using (virtual) PMU sensors deployed across major substations in the network. We emulate a variety of failures such as bus, line, transformer, generator, and/or load failures. Data analytics on the voltage phase angles and frequencies collected from the PMUs show that specious (or compromised) PMU device(s) can be identified through abnormal behaviour by comparing the trend of its frequency and phase angle reading with the ensemble of all other PMU readings in the network. If the reading trend of a particular PMU deviates from the weighted average of the reading trends of other PMUs at nearby substations, then it is likely that the PMU is malfunctioning. We assign a weight to each PMU denoting how electric-topology-wise close it is from where the PMU under consideration is located. The closer a PMU is, the higher the weight it has. To compute the closeness between two nodes in the power network, we employ a form of the resistance distance metric. It computes the electrical distance by taking into consideration the underlying topology as well as the physical laws that govern the electrical connections or flows between the network components. The detection accuracy of erroneous PMUs should be improved by employing this metric. We present results to validate the proposed approach. We also discuss the effectiveness of using an end-to-end VTB approach that allows us to investigate different types of failures and their responses as seen by the ensemble of PMUs. The collected data on certain types of events may be amenable to certain types of analysis (e.g., alerting for sudden changes can be done on a small window of data) and hence determine the data analytics architectures is required to evaluate the streaming PMU data.

and data analytics architecture.↗

Bayesian tomography and integrated data analysis in fusion diagnostics

In this article, a Bayesian tomography method using non-stationary Gaussian process for a prior has been introduced. The Bayesian formalism allows quantities which bear uncertainty to be expressed in the probabilistic form so that the uncertainty of a final solution can be fully resolved from the confidence interval of a posterior probability. Moreover, a consistency check of that solution can be performed by checking whether the misfits between predicted and measured data are reasonably within an assumed data error. In particular, the accuracy of reconstructions is significantly improved by using the non-stationary Gaussian process that can adapt to the varying smoothness of emission distribution. The implementation of this method to a soft X-ray diagnostics on HL-2A has been used to explore relevant physics in equilibrium and MHD instability modes. This project is carried out within a large size inference framework, aiming at an integrated analysis of heterogeneous diagnostics.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Summary of Thermodynamic Data Integration (M4SF-23LL010301052)

This progress report (Level 4 Milestone Number M4SF-23LL010301052) summarizes research conducted at Lawrence Livermore National Laboratory (LLNL) within the Argillite Activity Number M4SF-23LL010301052. SUPCRTNE is being developed as the primary engine for thermodynamic database development in support of geologic disposal of high-level nuclear waste. As used here, “SUPCRT” refers to both a computer program and its supporting database. Additional letters or numbers refer to specific variants (SUPCRT92, Johnson et al., 1992; SUPCRTBL, Zimmer et al., 2016; and SUPCRTNE). A SUPCRT database contains the data required to calculate the thermodynamic properties of solid, gas, and aqueous species over a wide range of temperature and pressure. Normally SUPCRT is used to create a higher-level data base that directly supports modeling and simulation codes such as EQ3/6, GWB, PHREEQC, and PFLOTRAN.

58 GEOSCIENCES↗

Ocean of Data: Integrating First-Principles Calculations and CALPHAD Modeling with Machine Learning

Thermodynamics is a science concerning the state of a system, whether it is stable, metastable or unstable, when interacting with the surroundings. Computational thermodynamics enables quantitative calculations of thermodynamic properties as a function of both external conditions and internal configurations, in terms of first and second derivatives of energy with respect to either potentials or molar quantities. Thermodynamic modeling based on the CALPHAD method enables the thermodynamics beyond stable states and is the foundation of Materials Genome and materials design. In last several decades, first-principles calculations based on density functional theory have provided invaluable thermochemical data to improve the robustness of CALPHAD modeling. Today with ever increasing computing power and large amount of data repositories online, it calls for a new paradigm for CALPHAD modeling approach incorporating machine learning to create a sustainable ecosystem for the ocean of data and for emergent behaviors.

Chemistry↗

Million-scale data integrated deep neural network for phonon properties of heuslers spanning the periodic table

Existing machine learning potentials for predicting phonon properties of crystals are typically limited on a material-to-material basis, primarily due to the exponential scaling of model complexity with the number of atomic species. We address this bottleneck with the developed Elemental Spatial Density Neural Network Force Field, namely Elemental-SDNNFF. The effectiveness and precision of our Elemental-SDNNFF approach are demonstrated on 11,866 full, half, and quaternary Heusler structures spanning 55 elements in the periodic table by prediction of complete phonon properties. Self-improvement schemes including active learning and data augmentation techniques provide an abundant 9.4 million atomic data for training. Deep insight into predicted ultralow lattice thermal conductivity (<1 Wm –1 K –1 ) of 774 Heusler structures is gained by p–d orbital hybridization analysis. Additionally, a class of two-band charge-2 Weyl points, referred to as “double Weyl points”, are found in 68% and 87% of 1662 half and 1550 quaternary Heuslers, respectively.

36 MATERIALS SCIENCE↗