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At least 109 records · Page 6

In vivo volumetric imaging of calcium and glutamate activity at synapses with high spatiotemporal resolution

Studying neuronal activity at synapses requires high spatiotemporal resolution. For high spatial resolution in vivo imaging at depth, adaptive optics (AO) is required to correct sample-induced aberrations. To improve temporal resolution, Bessel focus has been combined with two-photon fluorescence microscopy (2PFM) for fast volumetric imaging at subcellular lateral resolution. To achieve both high-spatial and high-temporal resolution at depth, we develop an efficient AO method that corrects the distorted wavefront of Bessel focus at the objective focal plane and recovers diffraction-limited imaging performance. Applying AO Bessel focus scanning 2PFM to volumetric imaging of zebrafish larval and mouse brains down to 500 µm depth, we demonstrate substantial improvements in the sensitivity and resolution of structural and functional measurements of synapses in vivo. This enables volumetric measurements of synaptic calcium and glutamate activity at high accuracy, including the simultaneous recording of glutamate activity of apical and basal dendritic spines in the mouse cortex.

59 BASIC BIOLOGICAL SCIENCES↗

IRAS images of nearby dark clouds

We have investigated approximately 100 nearby molecular clouds using the extensive, all-sky database of IRAS. The clouds in this study cover a wide range of physical properties including visual extinction, size, mass, degree of isolation, homogeneity and morphology. IRAS 100 and 60 micron co-added images were used to calculate the 100 micron optical depth of dust in the clouds. These images of dust optical depth compare very well with (12)CO and (13)CO observations, and can be related to H2 column density. From the optical depth images we locate the edges of dark clouds and the dense cores inside them. We have identified a total of 43 `IRAS clouds' (regions with A(sub v) greater than 2) which contain a total of 255 `IRAS cores' (regions with A(sub v) greater than 4) and we catalog their physical properties. We find that the clouds are remarkably filamentary, and that the cores within the clouds are often distributed along the filaments. The largest cores are usually connected to other large cores by filaments. We have developed selection criteria to search the IRAS Point Source Catalog for stars that are likely to be associated with the clouds and we catalog the IRAS sources in each cloud or core. Optically visible stars associated with the clouds have been identified from the Herbig and Bell catalog. From these data we characterize the physical properties of the clouds including their star-formation efficiency.

Wood, Douglas O. S.↗

Monitoring of chlorin-based photosensitiser localisation with dual-wavelength fluorescence imaging: numerical simulations

An approach to the estimation of chlorin-based photosensitiser localisation with dual-wavelength fluorescence imaging after topical application or intravenous injection is developed based on numerical simulations. Fluorescence imaging, which is commonly used for the monitoring of photosensitiser distribution within tissue, does not allow for its depth-resolved imaging. Chlorin-based photosensitisers feature two peaks in their absorption spectra corresponding to 402 and 662 nm, which allows for fluorescence excitation at two wavelengths with significantly different light penetration depths into biotissues. The ratio of fluorescence signals detected upon irradiation at different excitation wavelengths is shown to provide the information about photosensitiser localisation. The cases of exponential in-depth decay of the photosensitiser concentration and uniform photosensitiser distribution within the layer at a certain depth within the medium are analysed. These cases simulate topical application of photosensitiser and its intravenous injection and further accumulation in tumour, respectively. (paper)

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Multiparallel Three-Dimensional Optical Microscopy

Multiparallel three-dimensional optical microscopy is a method of forming an approximate three-dimensional image of a microscope sample as a collection of images from different depths through the sample. The imaging apparatus includes a single microscope plus an assembly of beam splitters and mirrors that divide the output of the microscope into multiple channels. An imaging array of photodetectors in each channel is located at a different distance along the optical path from the microscope, corresponding to a focal plane at a different depth within the sample. The optical path leading to each photodetector array also includes lenses to compensate for the variation of magnification with distance so that the images ultimately formed on all the photodetector arrays are of the same magnification. The use of optical components common to multiple channels in a simple geometry makes it possible to obtain high light-transmission efficiency with an optically and mechanically simple assembly. In addition, because images can be read out simultaneously from all the photodetector arrays, the apparatus can support three-dimensional imaging at a high scanning rate.

Nguyen, Lam K.↗

New insights on ion track morphology in pyrochlores by aberration corrected scanning transmission electron microscopy

Here we demonstrate the enhanced imaging capabilities of an aberration corrected scanning transmission electron microscope to advance the understanding of ion track structure in pyrochlore structured materials (i.e., Gd 2 Ti 2 O 7 and Gd 2 TiZrO 7 ). Track formation occurs due to the inelastic transfer of energy from incident ions to electrons, and atomic-level details of track morphology as a function of energy-loss are revealed in the present work. A comparison of imaging details obtained by varying collection angles of detectors is discussed in the present work. A quantitative analysis of phase identification using high-angle annular dark field imaging is performed on the ion tracks. Finally, a novel 3-dimensional track reconstruction method is provided that is based on depth dependent imaging of the ion tracks. The technique is used in extracting the atomic-level details of nanoscale features, such as the disordered ion tracks, which are embedded in relatively thicker matrix. Another relevance of the method is shown by measuring the tilt of the ion tracks relative to the electron beam incidence that helps in knowing the structure and geometry of ion tracks quantitatively.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Investigation of the hard x-ray background in backlit pinhole imagers

Hard x-rays from laser-produced hot electrons (>10 keV) in backlit pinhole imagers can give rise to a background signal that decreases signal dynamic range in radiographs. Consequently, significant uncertainties are introduced to the measured optical depth of imaged plasmas. Past experiments have demonstrated that hard x-rays are produced when hot electrons interact with the high-Z pinhole substrate used to collimate the softer He-α x-ray source. Results are presented from recent experiments performed on the OMEGA-60 laser to further study the production of hard x-rays in the pinhole substrate and how these x-rays contribute to the background signal in radiographs. Radiographic image plates measured hard x-rays from pinhole imagers with Mo, Sn, and Ta pinhole substrates. The variation in background signal between pinhole substrates provides evidence that much of this background comes from x-rays produced in the pinhole substrate itself. A Monte Carlo electron transport code was used to model x-ray production from hot electrons interacting in the pinhole substrate, as well as to model measurements of x-rays from the irradiated side of the targets, recorded by a bremsstrahlung x-ray spectrometer. Inconsistencies in inferred hot electron distributions between the different pinhole substrate materials demonstrate that additional sources of hot electrons beyond those modeled may produce hard x-rays in the pinhole substrate.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Use of laser range finders and range image analysis in automated assembly tasks

A proposition to study the effect of filtering processes on range images and to evaluate the performance of two different laser range mappers is made. Median filtering was utilized to remove noise from the range images. First and second order derivatives are then utilized to locate the similarities and dissimilarities between the processed and the original images. Range depth information is converted into spatial coordinates, and a set of coefficients which describe 3-D objects is generated using the algorithm developed in the second phase of this research. Range images of spheres and cylinders are used for experimental purposes. An algorithm was developed to compare the performance of two different laser range mappers based upon the range depth information of surfaces generated by each of the mappers. Furthermore, an approach based on 2-D analytic geometry is also proposed which serves as a basis for the recognition of regular 3-D geometric objects.

Alvertos, Nicolas↗

SU-F-J-140: Using Handheld Stereo Depth Cameras to Extend Medical Imaging for Radiation Therapy Planning

Purpose: A correct body contour is essential for the accuracy of dose calculation in radiation therapy. While modern medical imaging technologies provide highly accurate representations of body contours, there are times when a patient’s anatomy cannot be fully captured or there is a lack of easy access to CT/MRI scanning. Recently, handheld cameras have emerged that are capable of performing three dimensional (3D) scans of patient surface anatomy. By combining 3D camera and medical imaging data, the patient’s surface contour can be fully captured. Methods: A proof-of-concept system matches a patient surface model, created using a handheld stereo depth camera (DC), to the available areas of a body contour segmented from a CT scan. The matched surface contour is then converted to a DICOM structure and added to the CT dataset to provide additional contour information. In order to evaluate the system, a 3D model of a patient was created by segmenting the body contour with a treatment planning system (TPS) and fabricated with a 3D printer. A DC and associated software were used to create a 3D scan of the printed phantom. The surface created by the camera was then registered to a CT model that had been cropped to simulate missing scan data. The aligned surface was then imported into the TPS and compared with the originally segmented contour. Results: The RMS error for the alignment between the camera and cropped CT models was 2.26 mm. Mean distance between the aligned camera surface and ground truth model was −1.23 +/−2.47 mm. Maximum deviations were < 1 cm and occurred in areas of high concavity or where anatomy was close to the couch. Conclusion: The proof-of-concept study shows an accurate, easy and affordable method to extend medical imaging for radiation therapy planning using 3D cameras without additional radiation. Intel provided the camera hardware used in this study.

60 APPLIED LIFE SCIENCES↗

A new method for recognizing quadric surfaces from range data and its application to telerobotics and automation

The problem of recognizing and positioning of objects in three-dimensional space is important for robotics and navigation applications. In recent years, digital range data, also referred to as range images or depth maps, have been available for the analysis of three-dimensional objects owing to the development of several active range finding techniques. The distinct advantage of range images is the explicitness of the surface information available. Many industrial and navigational robotics tasks will be more easily accomplished if such explicit information can be efficiently interpreted. In this research, a new technique based on analytic geometry for the recognition and description of three-dimensional quadric surfaces from range images is presented. Beginning with the explicit representation of quadrics, a set of ten coefficients are determined for various three-dimensional surfaces. For each quadric surface, a unique set of two-dimensional curves which serve as a feature set is obtained from the various angles at which the object is intersected with a plane. Based on a discriminant method, each of the curves is classified as a parabola, circle, ellipse, hyperbola, or a line. Each quadric surface is shown to be uniquely characterized by a set of these two-dimensional curves, thus allowing discrimination from the others. Before the recognition process can be implemented, the range data have to undergo a set of pre-processing operations, thereby making it more presentable to classification algorithms. One such pre-processing step is to study the effect of median filtering on raw range images. Utilizing a variety of surface curvature techniques, reliable sets of image data that approximate the shape of a quadric surface are determined. Since the initial orientation of the surfaces is unknown, a new technique is developed wherein all the rotation parameters are determined and subsequently eliminated. This approach enables us to position the quadric surfaces in a desired coordinate system. Experiments were conducted on raw range images of spheres, cylinders, and cones. Experiments were also performed on simulated data for surfaces such as hyperboloids of one and two sheets, elliptical and hyperbolic paraboloids, elliptical and hyperbolic cylinders, ellipsoids and the quadric cones. Both the real and simulated data yielded excellent results. Our approach is found to be more accurate and computationally inexpensive as compared to traditional approaches, such as the three-dimensional discriminant approach which involves evaluation of the rank of a matrix. Finally, we have proposed one other new approach, which involves the formulation of a mapping between the explicit and implicit forms of representing quadric surfaces. This approach, when fully realized, will yield a three-dimensional discriminant, which will recognize quadric surfaces based upon their component surfaces patches. This approach is faster than prior approaches and at the same time is invariant to pose and orientation of the surfaces in three-dimensional space.

Alvertos, Nicolas↗

Compositing Ground Penetrating Radar Scans of Differing Frequencies for Better Depth Perception

Methods developed to reduce interference in a noisy environment, be it radar target responses or effective communications in the presence of noise for mobile phone users, are vital in delivering a clear usable signal. The methods used to render a cleaner signal can also be used to combine signals of various frequencies. Ground Penetrating Radar (GPR) scans over the same area are no exception. This paper explores using an optimization problem solver, the Expectation Maximization (EM) Algorithm, to define the weights to use to combine multiple GPR scans at different frequencies over the same target area. This approach exploits the Gaussian Mixture Model (GMM) feature of the EM algorithm to produce a cleaner image at depth. Our method demonstrates a measured improvement toward producing a cleaner image.

97 MATHEMATICS AND COMPUTING↗

The effect of surface brightness dimming in the selection of high-z galaxies

Cosmological surface brightness (SB) dimming of the form (1 + z){sup –4} affects all sources. The strong dependence of SB dimming on redshift z suggests the presence of a selection bias when searching for high-z galaxies, i.e., we tend to detect only those galaxies with a high SB. However, unresolved knots of emission are not affected by SB dimming, thus providing a way to test the clumpiness of high-z galaxies. Our strategy relies on the comparison of the total flux detected for the same source in surveys characterized by different depth. For all galaxies, deeper images permit the better investigation of low-SB features. Cosmological SB dimming makes these low-SB features hard to detect when going to higher and higher redshifts. We used the GOODS and HUDF Hubble Space Telescope legacy data sets to study the effect of SB dimming on low-SB features of high-z galaxies and compare it to the prediction for smooth sources. We selected a sample of Lyman-break galaxies at z ∼ 4 (i.e., B {sub 435}-band dropouts) detected in all of the data sets and found no significant trend when comparing the total magnitudes measured from images with different depth. Through Monte Carlo simulations we derived the expected trend for galaxies with different SB profiles. The comparison to the data hints at a compact distribution for most of the rest-frame ultraviolet light emitted from high-z galaxies.

79 ASTRONOMY AND ASTROPHYSICS↗

Microchannel spatial light modulator

The Microchannel Spatial Light Modulator (MSLM), a versatile, highly sensitive, and optically addressed device being developed for real time optical information processing is discussed. The MSLM operates by converting an input optical image into a charge distribution at the surface of an electro-optic crystal. The charge distribution generates an electric field which modulates the refractive index of the crystal and thereby the phase or intensity of an image readout beam. Prototype devices employing 250 micron thick crystals exhibited a spatial resolution of 5 cycles/mm at 50% contrast, an exposure sensitivity of 2.2 nJ/cu cm and framing rates of 40 Hz with full modulation depth. The image processing operations that have been achieved using the internal processing mode of the MSLM include contrast reversal, contrast enhancement, edge enhancement, image addition and subtraction, analog and digital intensity thresholding, and binary level logic operations such as AND, OR, EXCLUSIVE OR, and NOR.

Warde, C.↗

“Seeing Is Believing”—In-Depth Analysis by Co-Imaging of Periodically-Poled X-Cut Lithium Niobate Thin Films

Nonlinear and quantum optical devices based on periodically-poled thin film lithium niobate (PP-TFLN) have gained considerable interest lately, due to their significantly improved performance as compared to their bulk counterparts. Nevertheless, performance parameters such as conversion efficiency, minimum pump power, and spectral bandwidth strongly depend on the quality of the domain structure in these PP-TFLN samples, e.g., their homogeneity and duty cycle, as well as on the overlap and penetration depth of domains with the waveguide mode. Hence, in order to propose improved fabrication protocols, a profound quality control of domain structures is needed that allows quantifying and thoroughly analyzing these parameters. In this paper, we propose to combine a set of nanometer-to-micrometer-scale imaging techniques, i.e., piezoresponse force microscopy (PFM), second-harmonic generation (SHG), and Raman spectroscopy (RS), to access the relevant and crucial sample properties through cross-correlating these methods. Based on our findings, we designate SHG to be the best-suited standard imaging technique for this purpose, in particular when investigating the domain poling process in x-cut TFLNs. While PFM is excellently recommended for near-surface high-resolution imaging, RS provides thorough insights into stress and/or defect distributions, as associated with these domain structures. In this context, our work here indicates unexpectedly large signs for internal fields occurring in x-cut PP-TFLNs that are substantially larger as compared to previous observations in bulk LN.

Reitzig, Sven (ORCID:0000000286970379)↗

Molecular Imaging of Microbially Induced Corrosion of Synthetic Archeological Glasses by a Rhizosphere Bacterium

Microbially induced corrosion (MIC) focuses on the degradation of solid materials, such as glass or metal. Soil microbes are often associated with the corrosion of foreign objects in the rhizosphere. Paenibacillus polymyxa SCE2, a facultative anaerobic bacterium in soil, is of the same genus as bacteria found near nuclear waste disposal sites. Time-of-flight secondary ion mass spectrometry (ToF-SIMS) was used for imaging surface changes induced by P. polymyxa SCE2 cultured on two synthetic glass coupons to represent natural analogs of materials that were studied in relation to the vitrification of nuclear waste. Multimodal imaging was used to verify bacterial coverage across the glass surface after long-term growth. ToF-SIMS spectral analysis showed detection of glass component ions, such as silicon oxide (m/z – 59.96 SiO 2 – ) and aluminum oxide (m/z – 101.95 Al 2 O 3 – ), and biofilm’s extracellular polymeric substance (EPS) components, such as pentadecanoic acid (m/z – 241.22 C 15 H 29 O 2 – ) and sterol lipids (m/z – 311.16 C 20 H 23 O 3 – ). ToF-SIMS spectral, imaging, and depth profiling analyses showed that the glass rich in silica and other light elements (“granite glass”) had more “corrosion related” peaks than the glass that was less silica-rich and contained more iron (“dike glass”). Furthermore, these surface and interface compositional and spatial differences observed in the mass spectra and imaging were attributed to bacterial metabolism and an electron transfer mechanism influenced by morphological and compositional differences between the two types of glasses. ToF-SIMS is effective in studying microbial effects, bringing new molecular insights into MIC in a broader context of materials degradation.

Amorphous materials↗

THE ATACAMA COSMOLOGY TELESCOPE: PHYSICAL PROPERTIES OF SUNYAEV-ZEL'DOVICH EFFECT CLUSTERS ON THE CELESTIAL EQUATOR {sup ,}

We present the optical and X-ray properties of 68 galaxy clusters selected via the Sunyaev-Zel'dovich (SZ) effect at 148 GHz by the Atacama Cosmology Telescope (ACT). Our sample, from an area of 504 deg{sup 2} centered on the celestial equator, is divided into two regions. The main region uses 270 deg{sup 2} of the ACT survey that overlaps with the co-added ugriz imaging from the Sloan Digital Sky Survey (SDSS) over Stripe 82 plus additional near-infrared pointed observations with the Apache Point Observatory 3.5 m telescope. We confirm a total of 49 clusters to z Almost-Equal-To 1.3, of which 22 (all at z > 0.55) are new discoveries. For the second region, the regular-depth SDSS imaging allows us to confirm 19 more clusters up to z Almost-Equal-To 0.7, of which 10 systems are new. We present the optical richness, photometric redshifts, and separation between the SZ position and the brightest cluster galaxy (BCG). We find no significant offset between the cluster SZ centroid and BCG location and a weak correlation between optical richness and SZ-derived mass. We also present X-ray fluxes and luminosities from the ROSAT All Sky Survey which confirm that this is a massive sample. One of the newly discovered clusters, ACT-CL J0044.4+0113 at z = 1.1 (photometric), has an integrated XMM-Newton X-ray temperature of kT{sub X} = 7.9 {+-} 1.0 keV and combined mass of M {sub 200a} = 8.2{sup +3.3} {sub -2.5} Multiplication-Sign 10{sup 14} h {sup -1} {sub 70} M {sub Sun }, placing it among the most massive and X-ray-hot clusters known at redshifts beyond z = 1. We also highlight the optically rich cluster ACT-CL J2327.4-0204 (RCS2 2327) at z = 0.705 (spectroscopic) as the most significant detection of the whole equatorial sample with a Chandra-derived mass of M {sub 200a} = 1.9{sup +0.6} {sub -0.4} Multiplication-Sign 10{sup 15} h {sup -1} {sub 70} M {sub Sun }, placing it in the ranks of the most massive known clusters like El Gordo and the Bullet Cluster.

79 ASTRONOMY AND ASTROPHYSICS↗

High Resolution Multimodal Chemical Imaging Platform for Organics and Inorganics

Chemical analysis at the nanoscale is critical to advance our understanding of materials and systems from medicine and biology to material science and computing. Macroscale-observed phenomena in these systems are in the large part driven by processes that take place at the nanoscale and are highly heterogeneous. Therefore, there is a clear need to develop a new technology that enables correlative imaging of material functionalities with nanoscale spatial and chemical resolutions that will enable us to untangle the structure–function relationship of functional materials. As such, here, we report on the analytical figures of merit of the newly developed correlative chemical imaging technique of helium ion microscopy coupled with secondary ion mass spectrometry (HIM-SIMS) that enables multimodal topographical/chemical imaging of organic and inorganic materials at the nanoscale. In HIM-SIMS, a focused ion beam acts as a sputtering and ionization source for chemical analysis along with simultaneous high-resolution surface imaging, providing an unprecedented level of spatial resolution for gathering chemical information on organic and inorganic materials. In this work, we demonstrate HIM-SIMS as a platform for a next-generation tool for an in situ material design and analysis capable of down to 8 nm spatial resolution chemical imaging, layered metal structure imaging in depth profiling, single graphene layer detection, and spectral analysis of metals, metal oxides, and polymers.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

In vivo visualization method by absolute blood flow velocity based on speckle and fringe pattern using two-beam multipoint laser Doppler velocimetry

Two-beam multipoint laser Doppler velocimetry (two-beam MLDV) is a non-invasive imaging technique able to provide an image of two-dimensional blood flow and has potential for observing cancer as previously demonstrated in a mouse model. In two-beam MLDV, the blood flow velocity can be estimated from red blood cells passing through a fringe pattern generated in the skin. The fringe pattern is created at the intersection of two beams in conventional LDV and two-beam MLDV. Being able to choose the depth position is an advantage of two-beam MLDV, and the position of a blood vessel can be identified in a three-dimensional space using this technique. Initially, we observed the fringe pattern in the skin, and the undeveloped or developed speckle pattern generated in a deeper position of the skin. The validity of the absolute velocity value detected by two-beam MLDV was verified while changing the number of layers of skin around a transparent flow channel. The absolute velocity value independent of direction was detected using the developed speckle pattern, which is created by the skin construct and two beams in the flow channel. Finally, we showed the relationship between the signal intensity and the fringe pattern, undeveloped speckle, or developed speckle pattern based on the skin depth. The Doppler signals were not detected at deeper positions in the skin, which qualitatively indicates the depth limit for two-beam MLDV.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Effects of overlapping sources on cosmic shear estimation: Statistical sensitivity and pixel-noise bias

The next generation of dark-energy imaging surveys — so called “Stage-IV” surveys, such as that of the Rubin Observatory Legacy Survey of Space and Time (LSST) — will cross a threshold in the number density of detected sources on the sky that requires qualitatively different image analysis and measurement techniques compared to the current generation of Stage-III surveys. In Stage-IV surveys, a significant amount of the cosmologically useful information is due to sources whose images overlap with those of other sources on the sky. Here, we focus on the weak gravitational lensing probe, for which we expect the largest impact since the cosmic shear signal is primarily encoded in the estimated shapes of observed galaxies and thus directly impacted by overlaps. We introduce a framework based on the Fisher formalism to analyze the effect of the overlapping sources (“blending”) on the estimation of cosmic shear. This method gives concrete predictions for the minimum loss of information due to noise and blending for any choice of “deblending” scheme and shape-measurement algorithm. Our studies account for undetected sources but do not address their full effects and biases they may introduce. We use simulated images and predict this impact of blending for three surveys: the Dark Energy Survey (DES), the Hyper-Suprime Cam Subaru Strategic Program (HSC-SSP), and the Rubin LSST. Our methodology successfully estimates the statistical sensitivity to weak lensing for DES and HSC early results. For LSST, we present the expected loss in statistical sensitivity for the ten-year survey due to blending. We find that for approximately 62% of galaxies that are likely to be detected in full-depth LSST images, at least 1% of the flux in their pixels is from overlapping sources. We also find that the statistical correlations between measures of overlapping galaxies and, to a much lesser extent (0.2%) the higher shot noise level due to their presence, decrease the effective number density of galaxies, N eff , by ~ 18%. We calculate an upper limit on N eff of 39.4 galaxies per arcmin 2 in r band. We study the impact of stars on as a function of stellar density and illustrate the diminishing returns of extending the survey into lower Galactic latitudes. We extend the simulation-based Fisher formalism to predict the expected increase in pixel-noise bias due to blending for maximum-likelihood (ML) shape estimators. We find that noise bias depends sensitively on the particular shape estimator and measure of ensemble-average shape that is used, and properties of the galaxy that include redshift-dependent quantities such as size and luminosity. The source code for these studies is available online.[The documented software developed for the catalog-level studies are available in the open-source LSST DESC github repository https://github.com/LSSTDESC/WeakLensingDeblending. The software for analyzing one or two galaxies with user-defined parameters is in the open-source github repository https://github.com/ismael-mendoza/ShapeMeasurementFisherFormalism.]

79 ASTRONOMY AND ASTROPHYSICS↗