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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 109 records · Page 6
All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

A High-Quality Genome-Scale Model for Rhodococcus opacus Metabolism

Rhodococcus opacus is a bacterium that has a high tolerance to aromatic compounds and can produce significant amounts of triacylglycerol (TAG). Here, we present iGR1773, the first genome-scale model (GSM) of R. opacus PD630 metabolism based on its genomic sequence and associated data. The model includes 1773 genes, 3025 reactions, and 1956 metabolites, was developed in a reproducible manner using CarveMe, and was evaluated through Metabolic Model tests (MEMOTE). We combine the model with two Constraint-Based Reconstruction and Analysis (COBRA) methods that use transcriptomics data to predict growth rates and fluxes: E-Flux2 and SPOT (Simplified Pearson Correlation with Transcriptomic data). Growth rates are best predicted by E-Flux2. Flux profiles are more accurately predicted by E-Flux2 than flux balance analysis (FBA) and parsimonious FBA (pFBA), when compared to 44 central carbon fluxes measured by 13C-Metabolic Flux Analysis (13C-MFA). Under glucose-fed conditions, E-Flux2 presents an R2 value of 0.54, while predictions based on pFBA had an inferior R2 of 0.28. We attribute this improved performance to the extra activity information provided by the transcriptomics data. For phenol-fed metabolism, in which the substrate first enters the TCA cycle, E-Flux2’s flux predictions display a high R2 of 0.96 while pFBA showed an R2 of 0.93. We also show that glucose metabolism and phenol metabolism function with similar relative ATP maintenance costs. These findings demonstrate that iGR1773 can help the metabolic engineering community predict aromatic substrate utilization patterns and perform computational strain design.

Roell, Garrett W.↗
NASA NTRS1989

Long wavelength semiconductor lasers development for infrared heterodyne applications

PbSnTe single crystals were grown in a new 3 zone furnace. Molecular beam epitaxy (MBE) growth parameters have been established, including beam flux vs. temperature, and growth rates and dopant vs. PbTe flux ratios for the various effusion sources involved. Lattice matching studies were conducted and doping studies were completed. Broad area Pb(1-x)Sn(x)Te double heterostructure lasers were fabricated with active layer compositions up to x equals 0.04 at percent Sn in the active layers. Electrical and optical test data are presented.

Feit, Zeev↗
DOE OSTI2022

Application of the metabolic modeling pipeline in KBase to categorize reactions, predict essential genes, and predict pathways in an isolate genome

The DOE Systems Biology Knowledgebase (KBase) platform offers a range of powerful tools for the reconstruction, refinement, and analysis of genome-scale metabolic models built from microbial isolate genomes. In this chapter, we describe and demonstrate these tools in action with an analysis of isoprene production in the Bacillus subtilis DSM genome. Two different methods are applied to build initial metabolic models for the DSM genome, then the models are gapfilled in three different growth conditions. Next, flux balance analysis (FBA) and flux variability analysis (FVA) techniques are applied to both study the growth of these models in minimal media and classify reactions within each model based on essentiality and functionality. The models are applied with the FBA method to predict essential genes, which are then compared to an updated list of essential genes obtained for B. subtilis 168, a very similar strain to the DSM isolate. The models are also applied to simulate Biolog growth conditions, and these results are compared with Biolog data collected for B. subtilis 168. Finally, the DSM metabolic models are applied to explore the pathways and genes responsible for producing isoprene in this strain. These studies demonstrate the accuracy and utility of models generated from the KBase pipelines, as well as exploring the tools available for analyzing these models.

DOE knowledgebase↗
DOE OSTI2021

Application of the Metabolic Modeling Pipeline in KBase to Categorize Reactions, Predict Essential Genes, and Predict Pathways in an Isolate Genome

The DOE Systems Biology Knowledgebase (KBase) platform offers a range of powerful tools for the reconstruction, refinement, and analysis of genome-scale metabolic models built from microbial isolate genomes. In this chapter, we describe and demonstrate these tools in action with an analysis of isoprene production in the Bacillus subtilis DSM genome. Two different methods are applied to build initial metabolic models for the DSM genome, then the models are gapfilled in three different growth conditions. Next, flux balance analysis (FBA) and flux variability analysis (FVA) techniques are applied to both study the growth of these models in minimal media and classify reactions within each model based on essentiality and functionality. The models are applied with the FBA method to predict essential genes, which are then compared to an updated list of essential genes obtained for B. subtilis 168, a very similar strain to the DSM isolate. The models are also applied to simulate Biolog growth conditions, and these results are compared with Biolog data collected for B. subtilis 168. Finally, the DSM metabolic models are applied to explore the pathways and genes responsible for producing isoprene in this strain. These studies demonstrate the accuracy and utility of models generated from the KBase pipelines, as well as exploring the tools available for analyzing these models.

Allen, Benjamin↗
NASA NTRS1988

Growth and yield characteristics of 'Waldmann's Green' leaf lettuce under different photon fluxes from metal halide or incandescent + fluorescent radiation

Growth of 'Waldmann's Green' leaf lettuce under metal halide radiation was compared with that under In = Fl at the same photosynthetic photon flux (920 micromol/s/sq m) to evaluate the influence of lamp type on growth. No differences in leaf dry weight, leaf area, relative growth rate or photosynthesis occurred after 8 days of exposure to these radiation treatments for 20 h/day.

Knight, Sharon L.↗
DOE OSTI2024

Co-deposition of bismuth-nitrogen films on MgO (001) by molecular beam epitaxy

Here, we attempted to grow a thin film of BiN by co-deposition of bismuth and nitrogen on rock-salt structure MgO (001) substrates. Furthermore, we studied the effect of variation of the growth temperature and the nitrogen to bismuth flux ratios on sample growth. For the samples grown and conditions used, we do not find strong evidence for the formation of a bulk Bi-N alloy. Even for very high nitrogen to bismuth flux ratio, we observed only bismuth and no nitrogen using bulk Rutherford back-scattering spectroscopy measurements, and only 1%–2% nitrogen was seen through surface Auger electron spectroscopy measurements. The in-plane lattice measurements show that the resulting Bi (110) samples are strained, which is presumably caused by lattice mismatch between the sample and the substrate when grown without any buffer layer. The use of a high-temperature buffer layer helps to release strain in the sample but only along one axis. Measurements of the atomic layer spacing using x-ray diffraction and also scanning tunneling microscopy confirm the Bi (110) thin film sample structure.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
NASA NTRS2022

The Hyper-inflation Stage in the Coronal Mass Ejection Formation: A Missing Link That Connects Flares, Coronal Mass Ejections, and Shocks in the Low Corona

We analyze the formation and three-dimensional (3D) evolution of two coronal mass ejections (CMEs) and their associated waves in the low corona via a detailed multi-viewpoint analysis of extreme-ultraviolet observations. We analyze the kinematics in the radial and lateral directions and identify three stages in the early evolution of the CME: (1) a hyper-inflation stage, when the CME laterally expands at speeds of ∼1000 km/s, followed by (2) a shorter and slower expansion stage of a few minutes and ending with (3) a self-similar phase that carries the CME into the middle corona. The first two stages coincide with the impulsive phase of the accompanying flare, the formation and separation of an EUV wave from the CME, and the start of the metric type II radio burst. Our 3D analysis suggests that the hyper-inflation phase may be a crucial stage in the CME formation with wide-ranging implications for solar eruption research. It likely represents the formation stage of the magnetic structure that is eventually ejected into the corona, as the white-light CME. It appears to be driven by the injection of poloidal flux into the ejecting magnetic structure, which leads to the lateral (primarily) growth of the magnetic flux rope. The rapid growth results in the creation of EUV waves and eventually shocks at the CME flanks that are detected as metric type II radio bursts. In other words, the hyper-inflation stage in the early CME evolution may be the "missing" link between CMEs, flares, and coronal shocks.

Solar coronal waves↗
NASA NTRS1988

Crystal growth of CdTe in space and thermal field effects on mass flux and morphology

The primary, long-range goals are the development of vapor phase crystal growth experiments, and the growth of technologically useful crystals in space. The necessary ground-based studies include measurements of the effects of temperature variations on the mass flux and crystal morphology in vapor-solid growth processes. For in-situ mass flux measurements dynamic microbalance techniques will be employed. Crystal growth procedures and equipment will be developed to be compatible with microgravity conditions and flight requirements. Emphasis was placed on the further development of crystal growth and the investigation of relevant transport properties of CdTe. The dependence of the mass flux on source temperature was experimentally established. The CdTe synthesis and pretreatment procedures are being developed that yield considerable improvements in mass transport rates, and mass fluxes which are independent of the amount of source material. A higher degree of stoichiometric control of CdTe than before was achieved during this period of investigation. Based on this, a CdTe crystal growth experiment, employing physical vapor transport, yielded very promising results. Optical microscopy and X-ray diffraction studies revealed that the boule contained several large sized crystal grains of a high degree of crystallinity. Further characterization studies of CdTe crystals are in progress. The reaction chamber, furnace dimensions, and ampoule location of the dynamic microbalance system were modified in order to minimize radiation effects on the balance performance.

Wiedemeier, H.↗
NASA NTRS2004

The Net Carbon Flux due to Deforestation and Forest Re-Growth in the Brazilian Amazon: Analysis using a Process-Based Model

We developed a process-based model of forest growth, carbon cycling, and land cover dynamics named CARLUC (for CARbon and Land Use Change) to estimate the size of terrestrial carbon pools in terra firme (non-flooded) forests across the Brazilian Legal Amazon and the net flux of carbon resulting from forest disturbance and forest recovery from disturbance. Our goal in building the model was to construct a relatively simple ecosystem model that would respond to soil and climatic heterogeneity that allows us to study of the impact of Amazonian deforestation, selective logging, and accidental fire on the global carbon cycle. This paper focuses on the net flux caused by deforestation and forest re-growth over the period from 1970-1998. We calculate that the net flux to the atmosphere during this period reached a maximum of approx. 0.35 PgC/yr (1PgC = 1 x 10(exp I5) gC) in 1990, with a cumulative release of approx. 7 PgC from 1970- 1998. The net flux is higher than predicted by an earlier study by a total of 1 PgC over the period 1989-1 998 mainly because CARLUC predicts relatively high mature forest carbon storage compared to the datasets used in the earlier study. Incorporating the dynamics of litter and soil carbon pools into the model increases the cumulative net flux by approx. 1 PgC from 1970-1998, while different assumptions about land cover dynamics only caused small changes. The uncertainty of the net flux, calculated with a Monte-Carlo approach, is roughly 35% of the mean value (1 SD).

Hirsch, A. I.↗
NASA NTRS1974

A new model of atmospheric gamma rays and its implications for measurement of diffuse cosmic gamma rays from within the atmosphere

A semi-empirical model is discussed which describes atmospheric gamma rays in the range 0.3 less then or equal to E less than or equal to 10 MeV based on the production per unit mass of air. The model is based on the concept of a source strength (photon/g sec MeV) which is energy- and depth-dependent, and derived from measured fluxes. Quantities such as directional fluxes, angular distributions, and growth curves are calculated directly from this model. The source function is described by four energy-dependent parameters determined empirically from fluxes measured with a 7.5 cm x 7.5 cm Nal counter over the atmospheric depth range from 3.5 to 500 g/sq cm. From S(E,x), obtained for both continuum and discrete gamma rays at lambda = 40 deg, the depth and angle dependence of directional fluxes were calculated. Growth-curve predictions needed to separate atmospheric from diffuse cosmic fluxes were determined.

Matteson, J. L.↗
NASA NTRS2005

High Growth Rate Metal-Organic Molecular Beam Epitaxy for the Fabrication of GaAs Space Solar Cells

In this work it is shown that high quality GaAs photovoltaic devices can be produced by Molecular Beam Epitaxy (MBE) with growth rates comparable to metal-organic chemical vapor deposition (MOCVD) through the subsitution of group III solid sources by metal-organic compounds. The influence the III/V flux-ratio and growth temperatures in maintaining a two dimensional layer by layer growth mode and achieving high growth rates with low residual background impurities is investigated. Finally subsequent to the study of the optimization of n- and p doping of such high growth rate epilayers, results from a preliminary attempt in the fabrication of GaAs photovoltaic devices such as tunnel diodes and solar cells using the proposed high growth rate approach are reported.

Freundlich, A.↗
NASA NTRS2021

Assessing Net Growth of Phytoplankton Biomass on Hourly to Annual Timescales Using the Geostationary Ocean Color Instrument

Questions of whether diurnal changes in carbon fixation affect the global carbon budget cannot be answered using the present generation of polar orbiting ocean color sensors that can only retrieve one image daily. Here, we present novel satellite-derived indices of chlorophyll-based production based on the Geostationary Ocean Color Imager (GOCI), whose hourly imaging capability offer the potential for direct estimates of net phytoplankton growth over hourly to seasonal time scales. Our results reveal large variations in net chlorophyll growth in the GOCI study region, both over the day and between seasons. Hourly changes in chlorophyll concentration are highest during spring while growth rates show maxima during the winter. We show seasonal relationships between growth and photon flux. Our study suggests that Geostationary Ocean Color data can be used to constrain phytoplankton productivity on diurnal time scales and be an essential tool to better understand diurnal growth patterns over large spatial regions.

Joseph E. Salisbury↗
DOE OSTI2025

Surface Energy Balance Responses to Radiative Forcing in the Central Arctic From MOSAiC and Models

The Arctic surface energy budget (SEB) couples the atmosphere with the sea ice, making it useful for both studying surface processes as well as evaluating models. Improved understanding of atmosphere-ice interactions is required to improve models, requiring year-round observations to address seasonally dependent biases. This work uses novel observations from the MOSAiC expedition to quantify the responses of surface fluxes to radiative forcing over sea ice throughout a complete annual cycle. We identify two primary regimes of flux response: an ice growth regime in winter and an ice melt regime in summer. In the growth regime, changes in radiative forcing impact upwelling longwave, sensible heat, and subsurface heat fluxes, whereas in the melt regime changes in radiative forcing primarily alter the amount of melt and subsurface transmission because the surface temperature is fixed. These observed responses of surface fluxes to radiative forcing are used to evaluate seven weather forecast models during the ice growth regime. In most models, the responses of surface fluxes to radiative forcing do not match observations. Many models also have biased downwelling longwave. One model (the Coupled Arctic Forecast System; CAFS) adequately captures both the mean radiative forcing and the flux responses in winter. CAFS is further evaluated against observations spanning the full MOSAiC year, demonstrating sufficient agreement to provide a more generalized understanding of these SEB process relationships across the Arctic.

54 ENVIRONMENTAL SCIENCES↗
NASA NTRS1986

Particle propagation, wave growth and energy dissipation in a flaring flux tube

Wave amplification by downgoing particles in a common flare model is investigated. The flare is assumed to occur at the top of a coronal magnetic flux loop, and results in the heating of plasma in the flaring region. The hot electrons propagate down the legs of the flux tube towards increasing magnetic field. It is simple to demonstrate that the velocity distributions which result in this model are unstable to both beam instabilities and cyclotron maser action. An explanation is presented for the propagation effects on the distribution, and the properties of the resulting amplified waves are explored, concentrating on cyclotron maser action, which has properties (emission in the z mode below the local gyrofrequency) quite different from maser action by other distributions considered in the context of solar flares. The z mode waves will be damped in the coronal plasma surrounding the flaring flux tube and lead to heating there. This process may be important in the overall energy budget of the flare. The downgoing maser is compared with the loss cone maser, which is more likely to produce observable bursts.

White, S. M.↗
NASA NTRS1994

Modeling gas exchange in a closed plant growth chamber

Fluid transport models for fluxes of water vapor and CO2 have been developed for one crop of wheat and three crops of soybean grown in a closed plant growth chamber. Correspondence among these fluxes is discussed. Maximum fluxes of gases are provided for engineering design requirements of fluid recycling equipment in growth chambers. Furthermore, to investigate the feasibility of generalized crop models, dimensionless representations of water vapor fluxes are presented. The feasibility of such generalized models and the need for additional data are discussed.

Cornett, J. D.↗
DOE OSTI2026

Crystal Growth of Quaternary RE 2 EuSi 2 S 8 ( RE = Ce–Nd, Sm, Gd, Tb) Using Flux-Assisted Boron Chalcogen Mixture (BCM) Method: Investigation of Magnetic and Luminescence Properties

A series of quaternary rare-earth containing thiosilicates with the general formula RE 2 EuSi 2 S 8 (RE = Ce–Nd, Sm, Gd, Tb) has been synthesized via the flux-assisted boron chalcogen mixture (BCM) crystal growth method. High-quality single crystals were obtained, and their crystal structures were determined by single-crystal X-ray diffraction. The RE 2 EuSi 2 S 8 series crystallizes in the trigonal system, adopting the space group R-3c. Polycrystalline samples were employed for physical property measurements, including magnetic susceptibility measurements, UV–visible diffuse reflectance, and photoluminescent response. Magnetic data of RE 2 EuSi 2 S 8 ( RE = Ce, Nd, and Gd) were collected over the 2–300 K temperature range. The samples were paramagnetic behavior with negative Weiss constants (θ W = −11.05, −10.55, and −1.35 K respectively). Their thermal stability was investigated using thermogravimetric analysis (TGA). Optical band gaps, estimated from diffuse reflectance spectra, were determined to be 2.2(1) eV for Ce 2 EuSi 2 S 8 , 1.8(1) eV for Nd 2 EuSi 2 S 8 , and 1.7(1) eV for Gd 2 EuSi 2 S 8 respectively. Finally, photoluminescence measurements were collected on Ce 2 EuSi 2 S 8 and Tb 2 EuSi 2 S 8 single crystals.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗