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All sourcesNASA NTRSDOE OSTI
NASA NTRSDate not supplied

High School Citizen Scientists Use AI/ML to Predict Intra-Ocular Pressure From Gene Expression Data for Spaceflown Mice

Artificial Intelligence (AI) and Machine Learning (ML) have increasingly become pivotal in biological and biomedical research, largely due to the culture of open data sharing and its associated benefits. The methodologies inherent in AI/ML are particularly adept at identifying and forecasting biological phenotypes from the vast amounts of data generated by next-generation sequencing technologies. These techniques offer substantial promise for advancing research in space biosciences and for the development of automated systems for monitoring space health. Nevertheless, there are crucial aspects to consider when training, validating, and testing machine learning models in both biological research and clinical contexts. It is essential that Open Science principles, including data sharing and the availability of open-source code, are complemented by high-quality, publicly accessible training resources. These resources should focus on best practices and include modules based on real-world scientific cases and data to ensure that future AI/ML practitioners gain practical experience with genuine problems. Addressing this knowledge gap, we have designed, developed, and delivered both interactive and self-paced training programs for citizen scientists worldwide, enabling them to utilize AI/ML for space biology research. This initiative was made possible through generous funding from a Transformation to Open Science Training grant. The interactive training sessions, conducted this summer, utilized AI/ML techniques to analyze data from the Open Science Data Repository, specifically targeting the effects of spaceflight on ocular structure and function. The dataset OSD-583, from the Rodent Research 9 mission, provides experimental data detailing the ocular responses of mice subjected to a 35-day spaceflight, compared with ground control counterparts. Using OSD-583 as observational data, our summer training participants applied AI/ML methods to predict intraocular pressure from RNA-seq data and identify the genes most predictive of the observed responses. Further analysis through pathway enrichment and gene set enrichment revealed that these genes are involved in molecular and cellular processes contributing to retinal degeneration.

James Casaletto↗
NASA NTRS2021

Semantic Segmentation of High-Resolution Satellite Imagery using Generative Adversarial Networks with Progressive Growing

With increase in urbanization and Earth Sciences research into urban areas, the need to quickly and accurately segment urban rooftop maps has never been greater. Cur-rent machine learning techniques struggle to produce high accuracy maps in dense urban zones where there is high image noise and foot print overlap. In this paper, we evaluate a training methodology for pixel-wise segmentation for high resolution satellite imagery using progressive growing of generative adversarial networks as a solution. We apply our model to segmenting building rooftops and compare these results to conventional methods for rooftop segmentation. We evaluate our approach using the SpaceNet version 2 and xView datasets. Our experiments show that for SpaceNet, progressive Generative Adversarial Network (GAN) training achieved a test accuracy of 93% compared to 89% for traditional GAN training and 87% for U-Net architecture, while for xView, we achieved 71% accuracy using progressive GAN training compared to 69% through traditional GAN training and 65% using U-Net.

Semantic↗
NASA NTRS2019

Evaluating Combinations of Sentinel-2 Data and Machine-Learning Algorithms for Mangrove Mapping in West Africa

Creating a national baseline for natural resources, such as mangrove forests, and monitoring them regularly often requires a consistent and robust methodology. With freely available satellite data archives and cloud computing resources, it is now more accessible to conduct such large-scale monitoring and assessment. Yet, few studies examine the reproducibility of such mangrove monitoring frameworks, especially in terms of generating consistent spatial extent. Our objective was to evaluate a combination of image processing approaches to classify mangrove forests along the coast of Senegal and The Gambia. We used freely available global satellite data (Sentinel-2), and cloud computing platform (Google Earth Engine) to run two machine learning algorithms, random forest (RF), and classification and regression trees (CART). We calibrated and validated the algorithms using 800 reference points collected using high-resolution images. We further re-ran 10 iterations for each algorithm, utilizing unique subsets of the initial training data. While all iterations resulted in thematic mangrove maps with over 90% accuracy, the mangrove extent ranges between 827-2807 km2 for Senegal and 245-1271 km2 for The Gambia with one outlier for each country. We further report "Places of Agreement" (PoA) to identify areas where all iterations for both methods agree (506.6 km2 and 129.6 km2 for Senegal and The Gambia, respectively), thus have a high confidence in predicting mangrove extent. While we acknowledge the time- and cost-effectiveness of such methods for the landscape managers, we recommend utilizing them with utmost caution, as well as post-classification on-the-ground checks, especially for decision making.

Mondal, Pinki↗
NASA NTRS2023

Autonomy Verification & Validation Roadmap and Vision 2045

Advanced capabilities planned for the next generation of autonomous and increasingly autonomous air vehicles will include non-traditional components based on artificial intelligence, machine learning, and complex optimization and planning algorithms. These complex components will be used to provide enhanced safety and high-level decision-making functions. However, there are serious barriers to the deployment of autonomous aircraft in the National Airspace System (NAS). Current civil aviation certification processes are based on the concept that the correct behavior of a system or a component must be completely specified and verified prior to operation. This report from the Autonomy Verification and Validation (V&V) Roadmap and Vision 2045 project presents the most recent effort to build a comprehensive list of verification challenges and needs for autonomous aircraft, a roadmap to meet those autonomy V&V needs, the services they can enable, and point to the certification gaps they fill. To accomplish these goals, we assembled a team of world-class researchers from the aerospace industry (Boeing, Collins Aerospace, and GeneralElectric) and academia (University of Michigan, University of Texas, and Massachusetts Institute of Technology) with deep expertise in autonomy, aerospace systems, and assurance of Artificial Intelligence/machine learning systems.

Software Assurance↗
NASA NTRS2019

Utilizing Convolutional Neural Networks for Global Seagrass Habitat Mapping

Convolutional neural networks (CNNs) are becoming an increasingly prevalent machine learning algorithm due to their high accuracy and lack of reliance on heuristic processes. One of the major drawbacks of convolutional neural networks is their reliance on large amounts of training data in order to generate sensible results. This talk will cover how our team has utilized the strengths and overcome the weaknesses of convolutional neural networks as they apply to seagrass habitat mapping. We will share our technical CNN results over time, detail the requirements and challenges that our team overcame and explore how other teams can better incorporate a stronger seagrass component into their machine learning projects.

Convolutional↗
NASA NTRSDate not supplied

Enhancing Air Quality Applications in the Hindu Kush-Himalayan Region Using Satellite, Model, and Machine Learning Techniques

Air pollution in the Hindu Kush Himalayan (HKH) region of South Asia is a severe issue, as increases in emissions over the past two decades have degraded air quality (AQ) across the region, which poses major threats to human health, the ecosystem, climate, and agriculture. A diversity of anthropogenic and natural emission sources including transportation, power plants, industries, open biomass burning of crop residue, forest fires, cooking and heating fires, and dust storms contribute to unhealthy AQ and transboundary pollution issues in the region. Further complicating matters is the importance of meteorology and terrain on AQ, especially in the Kathmandu Valley where extreme haze episodes frequently develop from the atmospherically stable weather conditions during the winter monsoon. This study uses state-of-the-art satellite observations and modeling capabilities in conjunction with machine learning techniques to develop a comprehensive toolkit for enhancing AQ monitoring and forecasting in HKH. The toolkit incorporates new generation satellite observations from the TROPOspheric Monitoring Instrument (TROPOMI), Geostationary Environment Monitoring Spectrometer (GEMS), and Advanced Meteorological Imager (AMI), which provide unprecedented resolution on aerosols and trace gases, including nitrogen dioxide (NO 2 ), formaldehyde (CH2O), sulfur dioxide (SO 2 ), carbon monoxide (CO), and ozone (O 3 ), and aerosol optical depth (AOD). Value-added products [e.g., Particulate matter with diameters less than 2.5 micrometers (PM2.5)] are developed from the suite of satellite observations to further improve AQ monitoring capabilities in the region. The satellite products are also used to assimilate a high-resolution chemical transport model tailored for the HKH region, which is providing daily, 54-hour AQ forecasts with horizontal grid spacings of 12- and 4-km. This presentation will provide an overview of the suite of satellite- and model-based products in the AQ toolkit and application and performance of the toolkit for AQ monitoring and forecasting in HKH.

Air Quality↗
NASA NTRSDate not supplied

Snow Depth from AMSR-2 Using Multispectral Satellite Data in an Artificial Neural Network

By using diffusion theory and Monte Carlo lidar radiative transfer simulations, Hu et al. (2022b) has derived snow depth from the first-, second- and third-order moments of the lidar backscattering pathlength distribution. Lu et al. (2022) calculated the snow depth by applying the methods to the satellite ICESat-2 lidar measurements over the Arctic sea ice, as well as land surfaces of Northern Hemisphere. In this paper, an artificial neural network (ANN) algorithm, employing several channels from Advanced Microwave Scanning Radiometer 2 (AMSR-2) and the humidity vertical profiles from Global Modeling and Assimilation Office (GMAO) Goddard Earth Observing System for Instrument Teams (GEOS-IT) product, is trained to determine snow depth identified by time and geolocation matched 2019 ICESat-2 snow-depth data during winter months over the Arctic sea ice. The trained ANN snow-depth was applied to 2018 AMSR-2 clear pixel data, although the algorithms perform reasonably well in thinner clouds. The validation data (different from the training set) of ANN snow depth from AMSR-2 showed a good agreement with time matched and co-located snow-depth values from ICESat-2. The bias was near zero, with mean absolute error (MAE) 0.05 cm and a root-mean-square-error (RMSE) 0.08 cm. Prior applying the trained ANN snow depth to AMSR-2 data, a cloud screening algorithm was developed with a similar approach. A separate ANN cloud mask was trained to determine an AMSR-2 pixel is clear or cloudy with time and geolocation matched 2015 CALIOP Vertical Feature Mask (VFM) over Arctic sea ice. The ANN cloud mask from AMSR-2 under-estimated cloud fraction by 3-6% compared to CALIOP . The additional research is needed to conclusively evaluate the ANN cloud mask accuracy. Finally, this paper will lay the foundation for a sustained long-term snowfall and snow-storm monitoring system. The future Cloud Aerosol LIdar for Global scale Observations of the ocean-Land Atmosphere system (CALIGOLA) mission will provide a means to calculate snow depth from the lidar backscattering pathlength distribution, benefiting from the UV, visible and infrared pulses. With the calculated snow depth as the truth one could develop a machine learning algorithm, as it was done in this paper, using a passive microwave instrument available at that time to generate a wide range of snow depth data, covering extensive spatial areas in the cross-orbit direction.

Neural Network↗
NASA NTRSDate not supplied

Enhancing Air Quality Applications in the Hindu Kush-Himalayan Region Using Satellite, Model, and Machine Learning Techniques

Air pollution in the Hindu Kush Himalayan (HKH) region of South Asia is a severe issue, as increases in emissions over the past two decades have degraded air quality (AQ) across the region, which poses major threats to human health, the ecosystem, climate, and agriculture. A diversity of anthropogenic and natural emission sources including transportation, power plants, industries, open biomass burning of crop residue, forest fires, cooking and heating fires, and dust storms contribute to unhealthy AQ and transboundary pollution issues in the region. Further complicating matters is the importance of meteorology and terrain on AQ, especially in the Kathmandu Valley where extreme haze episodes frequently develop from the atmospherically stable weather conditions during the winter monsoon. This study uses state-of-the-art satellite observations and modeling capabilities in conjunction with machine learning techniques to develop a comprehensive toolkit for enhancing AQ monitoring and forecasting in HKH. The toolkit incorporates new generation satellite observations from the TROPOspheric Monitoring Instrument (TROPOMI), Geostationary Environment Monitoring Spectrometer (GEMS), and Advanced Meteorological Imager (AMI), which provide unprecedented resolution on aerosols and trace gases, including nitrogen dioxide, formaldehyde, sulfur dioxide, carbon monoxide, and ozone, and aerosol optical depth. Value-added products, such as level 4 PM2.5 products, are developed from the suite of satellite observations to further improve AQ monitoring capabilities in the region. The satellite products are also used to assimilate a high-resolution chemical transport model tailored for the HKH region, which is providing daily, 54-hour AQ forecasts with horizontal grid spacings of 12- and 4-km. This presentation will provide an overview of the suite of satellite- and model-based products in the AQ toolkit and application and performance of the toolkit for AQ monitoring and forecasting in HKH.

Forecasting↗
NASA NTRSDate not supplied

Developing Open-Source Training Materials for AI/ML and Space Biological Sciences Using NASA Cloud-Based Data

Artificial Intelligence (AI) and Machine Learning (ML) has gained significant traction in the biological and biomedical research fields, in part due to a culture of open data sharing and reuse. AI/ML methodology is well-suited to recognize and predict biological patterns from high-dimensional next-generation sequencing data (e.g. whole genome sequencing, transcriptomic sequencing), as well as from biological or medical imaging data (e.g. microscopy, computed tomography, ultrasound, magnetic resonance imaging, radiography). These methodologies hold particular promise for space biosciences research and automated space health monitoring systems. However, there are key considerations for properly training, validating, and testing a machine learning model in biological research or clinical application. Inexperienced researchers can produce models that perform poorly outside of the training dataset. Open Science principles such as data sharing and open-source code must go hand-in-hand with publicly available, high-quality training curricula in best practices, with modules centered on real-life scientific use cases and data so future AI/ML practitioners gain experience on real problems. Here we present the development of open-source training materials for AI/ML and space biosciences, as part of the NASA Transform to Open Science Training (TOPST) initiative. We develop 4 independent training programs, focused on the following topics: 1) Fundamentals of Machine Learning and Space Biosciences Domain, 2) Open Science, Artificial Intelligence, and Ethical Best Practices for Data Sharing and Analysis, 3) Using AI/ML Classification to Identify Gene Networks Affected By Space Exposure in Mouse Liver, and 4) Using Neural Networks to Find DNA Damage Patterns in Immune Cells after Radiation. All programs leverage cloud-based NASA biological datasets. The curriculum we present will enable worldwide access to training in AI/ML and scientific analysis.

James Casaletto↗
NASA NTRSDate not supplied

Evaluating Machine Learning Approaches to Plume Tracking

On July 15, 2022, the Hunga Tonga-Hunga Ha’apai (HTHH) submarine volcano erupted, propelling trace gasses and ash through the troposphere and up into the stratosphere. Previous studies manually tracked the aerosol and trace gas plumes over time across different positions in the southern hemisphere. Using imagery from NASA’s Earth Observing System, including MODIS aerosol products and OMI sulfur dioxide products, this research demonstrates how open-source machine learning (ML) models, like Meta’s Segment Anything Model (SAM), can perform automatic plume tracking following the Hunga Tonga eruption. This extensible methodology, and modular data processing and modeling pipeline, establishes a framework for systematically and rapidly studying natural disasters, including additional volcanic eruptions and large-scale wildfires. By combining advanced machine learning techniques, such as SAM’s zero-shot learning, with large volumes of NASA’s Earth Observation and remote sensing data, this work shows how AI and open science can accelerate research and generate actionable results, even for unprecedented events. The tools and technologies presented here can help translate earth science to action from NASA’s current and future Earth observing satellite missions, and assist researchers and stakeholders in understanding, mapping, and responding to natural disasters in a changing world.

machine learning↗
NASA NTRSDate not supplied

Evaluating the Efficacy of Conditional Variational Autoencoders in Generating Synthetic Single Nuclei RNA-Seq Data for Space Biology Research

Astronauts are subject to unique stressors during spaceflight, leading to changes in their cellular function. However, neither astronauts nor model organisms respond the same to spaceflight, and research implicates a contribution of omics components in differential responses. Understanding how gene expression affects astronaut health is critical for the success of long-term space missions, prompting interest in developing personalized predictive models leveraging artificial intelligence (AI) and machine learning (ML) techniques. Developing such models requires extensive data, which is challenging to obtain and share. This study explores the use of conditional variational autoencoders (CVAEs) to synthetically generate single-nuclei RNA-seq (snRNA-seq) data. CVAEs build on standard variational autoencoders (VAEs) by conditioning data generation on covariates like sample identity and mission parameters, enhancing the relevance of generated data for specific contexts. For our work, we built two CVAEs with varying degrees of sparsity to optimize both interpretability and generative power. We train and validate models on existing snRNA-seq data collected from the brain tissue of mice subjected to spaceflight conditions and their ground control counterparts. We evaluate model performance using statistical tests and visualizations to compare synthetic data to real data. We aim to demonstrate that these prototype CVAE architectures could be used in future space biology work and that this is a method worth further exploring.

Sarah Golts↗
NASA NTRS1996

Development of Collaborative Research Initiatives to Advance the Aerospace Sciences-via the Communications, Electronics, Information Systems Focus Group

The primary goal of the Adaptive Vision Laboratory Research project was to develop advanced computer vision systems for automatic target recognition. The approach used in this effort combined several machine learning paradigms including evolutionary learning algorithms, neural networks, and adaptive clustering techniques to develop the E-MOR.PH system. This system is capable of generating pattern recognition systems to solve a wide variety of complex recognition tasks. A series of simulation experiments were conducted using E-MORPH to solve problems in OCR, military target recognition, industrial inspection, and medical image analysis. The bulk of the funds provided through this grant were used to purchase computer hardware and software to support these computationally intensive simulations. The payoff from this effort is the reduced need for human involvement in the design and implementation of recognition systems. We have shown that the techniques used in E-MORPH are generic and readily transition to other problem domains. Specifically, E-MORPH is multi-phase evolutionary leaming system that evolves cooperative sets of features detectors and combines their response using an adaptive classifier to form a complete pattern recognition system. The system can operate on binary or grayscale images. In our most recent experiments, we used multi-resolution images that are formed by applying a Gabor wavelet transform to a set of grayscale input images. To begin the leaming process, candidate chips are extracted from the multi-resolution images to form a training set and a test set. A population of detector sets is randomly initialized to start the evolutionary process. Using a combination of evolutionary programming and genetic algorithms, the feature detectors are enhanced to solve a recognition problem. The design of E-MORPH and recognition results for a complex problem in medical image analysis are described at the end of this report. The specific task involves the identification of vertebrae in x-ray images of human spinal columns. This problem is extremely challenging because the individual vertebra exhibit variation in shape, scale, orientation, and contrast. E-MORPH generated several accurate recognition systems to solve this task. This dual use of this ATR technology clearly demonstrates the flexibility and power of our approach.

Knasel, T. Michael↗
NASA NTRSDate not supplied

Analyzing Natural Language Context in Human-Machine Teaming using Supervised Machine Learning

Building a foundation for trustworthiness and trust verification in multi-asset teaming is the research challenge of Autonomy Teaming and TRAjectories for Complex Trusted Operational Reliability (ATTRACTOR). The Design Reference Mission (DRM) for ATTRACTOR is a search and rescue mission objective governed by a multi-member team consisting of human and machine operators. A crucial component to the effort is the communication between humans and autonomous agents throughout both planning and execution stages of the mission. Intuitive communication methods and modalities are posited as critical enablers for certifying trust and trustworthiness. This paper reports on the data collection and analysis conducted in support of the Human Informed Natural-language GANs Evaluation (HINGE)project to attain explainable and trusted communication between human-machine assets. Two identically curated image description datasets were acquired for HINGE, both consisting of two unique input modalities (typed vs. verbal) and retrieved in two distinct contexts (general vs. specific). The gathered datasets were assessed and compared using Parts-of-Speech (POS)features, sentence similarity metrics, and linguistic analysis. Then, the datasets were modeled and tested separately and in combination with one another using machine learning algorithms. The comparison and testing results reveal a superior dataset, by which a preferred context and input is understood, for generating image representations of missing persons using a Generative Adversarial Network (GAN).

Bryan A Barrows↗
NASA NTRSDate not supplied

Machine Learning for the Validation of Expert-Elicited Causal Risk Diagrams

Exposure to spaceflight poses risk to human health in complex ways. To help manage this risk, the Human Systems Risk Board (HSRB) at the National Aeronautics and Space Administration (NASA) maintains a set of causal diagrams that attempt to explain how spaceflight hazards generate health risks and lead to adverse outcomes both in-mission, immediately post-mission, and over the long term. These causal risk diagrams are formulated as directed acyclic graphs (DAGs) and can function as knowledge graphs of connected risks and outcomes. These DAGs have proven useful for communication, and, through network analysis, have allowed for the identification of structurally important factors in the risk network. However, the utility these DAGs provide is directly proportional to their verisimilitude, making assessment of this trait using empirical data – whether from actual human spaceflight or various spaceflight analogue exposures and model organisms – a high priority. In this research we explore the use of machine learning algorithms to learn DAG structure from empirical data as a means of evaluating human-elicited DAG structures. To do so, we test several different graph structure-learning algorithms on data concerning changes in the bones of rats and mice after exposure to either spaceflight or a spaceflight analogue. We explore potential methods for indexing the similarity between each algorithm’s output DAG with all the others and with that of the expert-elicited DAG. We discuss next steps in this ongoing line of research and open science initiatives underway to complete them.

directed acyclic graphs↗
NASA NTRS1987

Optoelectronic analogs of self-programming neural nets - Architecture and methodologies for implementing fast stochastic learning by simulated annealing

Self-organization and learning is a distinctive feature of neural nets and processors that sets them apart from conventional approaches to signal processing. It leads to self-programmability which alleviates the problem of programming complexity in artificial neural nets. In this paper architectures for partitioning an optoelectronic analog of a neural net into distinct layers with prescribed interconnectivity pattern to enable stochastic learning by simulated annealing in the context of a Boltzmann machine are presented. Stochastic learning is of interest because of its relevance to the role of noise in biological neural nets. Practical considerations and methodologies for appreciably accelerating stochastic learning in such a multilayered net are described. These include the use of parallel optical computing of the global energy of the net, the use of fast nonvolatile programmable spatial light modulators to realize fast plasticity, optical generation of random number arrays, and an adaptive noisy thresholding scheme that also makes stochastic learning more biologically plausible. The findings reported predict optoelectronic chips that can be used in the realization of optical learning machines.

Farhat, Nabil H.↗
NASA NTRSDate not supplied

Architecting Safer Autonomous Aviation Systems

The aviation literature gives relatively little guidance to practitioners about the specifics of architecting systems for safety, particularly the impact of architecture on allocating safety requirements, or the relative ease of system assurance resulting from system or subsystem level architectural choices. As an exemplar, this paper considers common architectural patterns used within traditional aviation systems and explores their safety and safety assurance implications when applied in the context of integrating artificial intelligence (AI) and machine learning (ML) based functionality. Considering safety as an architectural property, we discuss both the allocation of safety requirements and the architectural trade-offs involved early in the design lifecycle. This approach could be extended to other assured properties, similar to safety, such as security. We conclude with a discussion of the safety considerations that emerge in the context of candidate architectural patterns that have been proposed in the recent literature for enabling autonomy capabilities by integrating AI and ML. A recommendation is made for the generation of a property-driven architectural pattern catalogue.

Architecture patterns↗
NASA NTRS2018

Machine Learning Application to Atmospheric Chemistry Modeling

Atmospheric chemistry is a high-dimensionality, large-data problem and thus may be suited to machine-learning algorithms. We show here the potential of a random forest regression algorithm to replace the gas-phase chemistry solver in the GEOS-Chem chemistry model. In this proof-of-concept study, we used one month of model output to train random forest regression models to predict the concentrations of each long-lived chemical species after integration based upon the physical and chemical conditions before the chemical integration. The choice of prediction type has a strong impact on the skill of the regression model. We find best results from predicting the change in concentration for very long-lived species and the absolute concentration for shorter lived species. The skill of the machine learning algorithm is further improved by using a family approach for NO and NO2 rather than treating them independently.By replacing the numerical integrator with the random forest algorithm and running this model for one month, we find that the model is able to reproduce many of the features of the reference chemistry simulation. Replacing the integration methodology with a machine learning algorithm has the potential to be substantially faster. There are a wide range of applications for such an approach, e.g. to generate boundary conditions, for use in air quality forecasts or chemical data assimilation systems, etc.

Keller, Christoph A.↗
NASA NTRS2011

Classification

A supervised learning task involves constructing a mapping from input data (normally described by several features) to the appropriate outputs. Within supervised learning, one type of task is a classification learning task, in which each output is one or more classes to which the input belongs. In supervised learning, a set of training examples---examples with known output values---is used by a learning algorithm to generate a model. This model is intended to approximate the mapping between the inputs and outputs. This model can be used to generate predicted outputs for inputs that have not been seen before. For example, we may have data consisting of observations of sunspots. In a classification learning task, our goal may be to learn to classify sunspots into one of several types. Each example may correspond to one candidate sunspot with various measurements or just an image. A learning algorithm would use the supplied examples to generate a model that approximates the mapping between each supplied set of measurements and the type of sunspot. This model can then be used to classify previously unseen sunspots based on the candidate's measurements. This chapter discusses methods to perform machine learning, with examples involving astronomy.

Oza, Nikunj C.↗