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Culture-Independent Microbial Air Profiling using a Spaceflight-Compatible Nanopore Sequencing Method

Microbial monitoring of spacecraft air is critical toward assessing the efficacy of microbial controls within the environmental control and life support systems to protect the crew and vehicle environment. Currently, onboard the International Space Station (ISS), the air is monitored every quarter using an impaction air sampler. With this method, microbial cells and spores are pulled onto plates containing a growth medium. Following onboard incubation, the crew reports approximate microbial levels to the ground, but sample return is required for identification. Upon return of the plates, the isolates present are identified for crew health risk assessments. As NASA moves beyond low-Earth orbit, sample return will be impractical, and a near real-time monitoring capability is essential. Significant strides have been made in recent years to utilize a molecular-based method for microbial profiling of ISS surfaces. The developed method is independent of microbial culture, thus removing the bias toward detecting only culturable organisms, eliminating the need for sample return, and reducing the risk to crew health from exposure to high microbial levels. The work described here details the evaluation of three different air sampling platforms whose product is amenable to downstream molecular processing. The three samplers were compared in terms of mass and power requirements, ease of use, and the resulting data. For the two highest-ranking samplers, a basic concept of operations was developed to transfer the sample into the already established preparation and sequencing process. Using these concepts of operations, an in-depth comparison of the molecular data generated was compared to the historical culture-based method. Data from both methods detailed similar microbial profiles, while the molecular method detailed microbial identifications that were lacking from the culture data. The developed method will enable the generation of near real-time microbial profiles of the spacecraft atmosphere.

Brandon Dunbar↗

NASA NTRS1978

NASA Lewis Research Center photovoltaic application experiments

The NASA Lewis Research Center has installed 16 geographically dispersed terrestrial photovoltaic systems as part of the DOE National Photovoltaic Program. Four additional experiments are in progress. Currently, operating systems are powering refrigerators, a highway warning sign, forest lookout towers, remote weather stations, a water chiller and insect survey traps. Experiments in progress include the world's first village power system, an air pollution monitor and seismic sensors. Under a separate activity, funded by the U.S. Agency for International Development, a PV-powered water pump and grain grinder is being prepared for an African village. System descriptions and status are included in this report.

Ratajczak, A.↗

NASA NTRS1986

Canopy reflectance modeling in a tropical wooded grassland

Geometric/optical canopy reflectance modeling and spatial/spectral pattern recognition are used to study the form and structure of savanna in West Africa. An invertible plant canopy reflectance model is tested for its ability to estimate the amount of woody vegetation cover in areas of sparsely wooded grassland from remotely sensed data. Dry woodlands and wooded grasslands, commonly referred to as savannas, are important ecologically and economically in Africa, and cover approximately forty percent of the continent by some estimates. The Sahelian and Sudanian savanna make up the important and sensitive transition zone between the tropical forests and the arid Saharan region. The depletion of woody cover, used for fodder and fuel in these regions, has become a very severe problem for the people living there. LANDSAT Thematic Mapper (TM) data is used to stratify woodland and wooded grassland into areas of relatively homogeneous canopy cover, and then by applying an invertible forest canopy reflectance model to estimate directly the height and spacing of the trees in the stands. Since height and spacing are proportional to biomass in some cases, a successful application of the segmentation/modeling techniques will allow direct estimation of woody biomass, as well as cover density, over significant areas of these valuable and sensitive ecosystems. Sahelian savanna sites in the Gourma area of Mali being used by the NASA/GIMMS project (Global Inventory Modeling and Monitoring System, at Goddard Space Flight Center), in conjunction with CIPEA/Mali (Centre International pour l'Elevage en Afrique) will be used for testing the canopy model. The model will also be tested in a Sudanian zone crop/woodland area in the Region of Segou, Mali.

Simonett, D.↗

NASA NTRS1992

Lab-scale Lidar Sensing of Diesel Engines Exhausts

Combustion technology and its environmental concerns are being considered with increasing attention, not only for global-scale effects, but also for toxicological implications, particularly in the lift conditions of traffic-congested areas and industrial sites. Majority combustion by-products (CO, NO(sub x)) and unburned hydrocarbons (HC), are already subject to increasingly severe regulations; however other, non-regulated minority species, mainly soot and heavy aromatic molecules, involve higher health risks, as they are suspected to be agents of serious pathologies and even mutagenic effects. This is but one of the reasons why much research work is being carried out worldwide on the physical properties of these substances. Correspondingly, the need arises to detect their presence in urban environments, with as high a sensitivity as is required by their low concentrations, proper time- and space-resolutions, and 'real-time' capabilities. Lidar techniques are excellent candidates to this purpose, although severe constraints limit their applicability, eye-safety problems and aerosol Mie scattering uncertainties above all. At CNR's Istituto Motori in Napels, a Lidar-like diagnostic system is being developed, aimed primarily at monitoring the dynamic behavior of internal combustion engines, particularly diesel exhausts, and at exploring the feasibility of a so-called 'Downtown Lidar'.

Borghese, A.↗

NASA NTRS2002

Telescience Resource Kit

The Telescience Resource Kit (TReK) is a PC based ground control system. It can be used by a single individual or in a group environment to monitor and control spacecraft systems and payloads. Capabilities include data receipt, data processing, data storage, data management, and data transmission. Commercial-Off-The-Shelf (COTS) hardware and software have been employed to reduce development costs, operations and maintenance costs, and to effectively take advantage of new commercial products as they become available. The TReK system is currently being used to monitor and control payloads aboard the International Space Station. It is located at sites around the world.

Schneider, Michelle↗

NASA NTRS2011

Evaluating the Use of Remote Sensing Data in the USAID Famine Early Warning Systems Network

The US Agency for International Development (USAID) s Famine Early Warning System Network (FEWS NET) provides monitoring and early warning support to decision makers responsible for responding to food insecurity emergencies on three continents. FEWS NET uses satellite remote sensing and ground observations of rainfall and vegetation in order to provide information on drought, floods and other extreme weather events to decision makers. Previous research has presented results from a professional review questionnaire with FEWS NET expert end-users whose focus was to elicit Earth observation requirements. The review provided FEWS NET operational requirements and assessed the usefulness of additional remote sensing data. Here we analyzed 1342 food security update reports from FEWS NET. The reports consider the biophysical, socioeconomic, and contextual influences on the food security in 17 countries in Africa from 2000-2009. The objective was to evaluate the use of remote sensing information in comparison with other important factors in the evaluation of food security crises. The results show that all 17 countries use rainfall information, agricultural production statistics, food prices and food access parameters in their analysis of food security problems. The reports display large scale patterns that are strongly related to history of the FEWS NET program in each country. We found that rainfall data was used 84% of the time, remote sensing of vegetation 28% of the time, and gridded crop models 10%, reflecting the length of use of each product in the regions. More investment is needed in training personnel on remote sensing products to improve use of data products throughout the FEWS NET system.

Brown, Molly E.↗

NASA NTRS2012

Evaluating the Use of Remote Sensing Data in the U.S. Agency for International Development Famine Early Warning Systems Network

The U.S. Agency for International Development (USAID)'s Famine Early Warning System Network (FEWS NET) provides monitoring and early warning support to decision makers responsible for responding to food insecurity emergencies on three continents. FEWS NET uses satellite remote sensing and ground observations of rainfall and vegetation in order to provide information on drought, floods, and other extreme weather events to decision makers. Previous research has presented results from a professional review questionnaire with FEWS NET expert end-users whose focus was to elicit Earth observation requirements. The review provided FEWS NET operational requirements and assessed the usefulness of additional remote sensing data. We analyzed 1342 food security update reports from FEWS NET. The reports consider the biophysical, socioeconomic, and contextual influences on the food security in 17 countries in Africa from 2000 to 2009. The objective was to evaluate the use of remote sensing information in comparison with other important factors in the evaluation of food security crises. The results show that all 17 countries use rainfall information, agricultural production statistics, food prices, and food access parameters in their analysis of food security problems. The reports display large-scale patterns that are strongly related to history of the FEWS NET program in each country. We found that rainfall data were used 84% of the time, remote sensing of vegetation 28% of the time, and gridded crop models 10% of the time, reflecting the length of use of each product in the regions. More investment is needed in training personnel on remote sensing products to improve use of data products throughout the FEWS NET system.

USAID↗

NASA NTRS2021

Tonlé Sap Food Security and Agriculture: Evaluating the Effects of Land Use and Hydrological Change on Ecosystem Vitality using Remotely-Sensed Data in the Tonlé Sap Lake Basin

Tonlé Sap Lake, the largest lake in Southeast Asia, is a critical source of fish and freshwater resources for the region. The health of this freshwater system is under pressure from accelerating dam construction, intensifying agriculture, deforestation, and changing climate patterns, forcing tradeoffs between immediate food security and the long-term vitality and productivity of the ecosystem. Efficient freshwater system monitoring is crucial to navigating these challenges. In collaboration with Conservation International, the Cambodian Ministry of Water Resources and Meteorology, and the Tonlé Sap Authority, we developed and tested remotely-sensed proxies for sub-indicators of the Freshwater Health Index (FHI), which is typically calculated using in situ datasets. We used landcover datasets derived from Landsat 5 Thematic Mapper (TM), Landsat 7 Enhanced Thematic Mapper Plus (ETM+), Landsat 8 Operational Land Imager (OLI), PROBA-V Vegetation sensor (VGT), Sentinel-2 Multispectral Imager (MSI), Advanced Very High Resolution Radiometer (AVHRR), and Envisat Medium Resolution Imaging Spectrometer (MERIS) as inputs to calculate land cover naturalness and bank modification. Additionally, we created a lake-level time series using a collection of altimetry data sources to estimate deviation from natural flow. We observed a decrease in landcover naturalness and a breakdown in the volume and regularity of annual lake levels from 2000-2020, reflecting increased pressure on water supply and agricultural productivity. At least 8% of forested areas in the basin were lost and rice harvest intensity increased over the course of the study period. These results will help our partners make informed decisions regarding freshwater management. Furthermore, our remotely-sensed FHI analysis can be replicated in other regions, providing decision makers with a snapshot of freshwater health in data-scarce environments.

Marco Vallejos↗

NASA NTRS2024

Flow Cytometry Methods to Monitor Immune System Dysregulation in Astronauts

Persistent immune system dysregulation has been documented to occur in astronauts participating in orbital spaceflight onboard the International Space Station. The phenomenon consists of reductions in T and NK cell function, altered cytokine profiles, persistent inflammation, and the subclinical reactivation of latent herpesviruses. In select crewmembers the dysregulation does actually lead to clinical symptoms, primarily atypical allergy or atopic dermatitis/zoster. Flow cytometry has served a central role defining the ‘immune assessment’ panel of assays that allow monitoring of astronauts. The cytometry assays which have been utilized include: 1. Peripheral leukocyte subsets 2. T cell function 3. Monocyte function 4. NK cell function 5. Intracellular cytokine analysis 6. Virus-specific T cell number (tetramer assay) 7. Virus-specific T cell function (peptide stimulation) 8. Leukocyte-bacterial challenge cytometry 9. Cytometric bead/multiplex array (soluble proteins) The use of these assays has been validated through various ISS flight investigations to define, to varying degrees, both in-flight, and post-flight immune system alterations. The kinetics of the dysregulation through the various phases of spaceflight, as well as post-flight recovery, have also been documented. To allow the science to occur within the orbital constraints of a spaceflight investigation, particular sample collection and processing techniques were developed compatible with the delays associated with terrestrial processing of in-flight samples. A subset of the assays has been adapted to routine monitoring of astronauts via a NASA ‘ISS Standard Measures’ activity, with the data from a specific crew then provided to all science investigators for that particular mission. This battery of cytometry assays has also been applied, through ground investigations, to several terrestrial ‘spaceflight analog’ populations. The purpose was to validate the analog which most closely replicates the in-flight observed pattern of alterations, generally believed to be winterover at an Antarctica station. To assist in determination of clinical risk, the assay panel has also been applied to investigations of various terrestrial patient populations, particularly zoster patients. As NASA is initiating crewed lunar missions via the ‘Artemis’ program, deployment of a miniaturized, microgravity-compatible flow cytometer, would be extremely beneficial to allow real time monitoring of crewmembers. Real time medical data could influence use of several countermeasures options during deep space missions. Several such instruments have been developed and validated to varying degrees of success. Assay details and summary findings across the various flight and ground platforms will be presented, as will current status in developing such technology for in-flight use.

Brian Crucian↗

NASA NTRS2004

MSTAR: an absolute metrology system with submicrometer accuracy

Laser metrology systems are a key component of stellar interferometers, used to monitor path lengths and dimensions internal to the instrument. Most interferometers use ‘relative’ metrology, in which the integer number of wavelengths along the path is unknown, and the measurement of length is ambiguous. Changes in the path length can be measured relative to an initial calibration point, but interruption of the metrology beam at any time requires a re- calibration of the system. iThe MSTAR sensor (Modulation Sideband Technology for Absolute Ranging) is a new system for measuring absolute distance, capable of resolving the integer cycle ambiguity of standard interferometers, and making it possible to measure distance with sub-nanometer accuracy. We describe the design of the system, show results for target distances up to 1 meter, and demonstrate how the system can be scaled to kilometer-scale distances. In recent experiments, we have used white light interferometry to augment the ‘truth’ measurements and validate the zero-point of the system. MSTAR is a general-purpose tool for conveniently measuring length with much greater accuracy than was previously possible, and has a wide range of possible applications.

Lay, Oliver↗

NASA NTRS2004

MSTAR: an absolute metrology system with submicrometer accuracy

Laser metrology systems are a key component of stellar interferometers, used to monitor path lengths and dimensions internal to the instrument. Most interferometers use ‘relative’ metrology, in which the integer number of wavelengths along the path is unknown, and the measurement of length is ambiguous. Changes in the path length can be measured relative to an initial calibration point, but interruption of the metrology beam at any time requires a re-calibration of the system. The MSTAR sensor (Modulation Sideband Technology for Absolute Ranging) is a new system for measuring absolute distance, capable of resolving the integer cycle ambiguity of standard interferometers, and making it possible to measure distance with sub-nanometer accuracy. We describe the design of the system, show results for target distances up to 1 meter, and demonstrate how the system can be scaled to kilometer-scale distances. In recent experiments, we have used white light interferometry to augment the ‘truth’ measurements and validate the zero-point of the system. MSTAR is a general-purpose tool for conveniently measuring length with much greater accuracy than was previously possible, and has a wide range of possible applications

Fetterman, Harrold R.↗

NASA NTRS1990

Performance analysis of a generalized concurrent error detection procedure

A general procedure for error detection in complex systems, called the data block capture and analysis monitoring process, is described and analyzed. It is assumed that, in addition to being exposed to potential external fault sources, a complex system will in general always contain embedded hardware and software fault mechanisms which can cause the system to perform incorrect computations and/or produce incorrect output. Thus, in operation, the system continuously moves back and forth between error and no-error states. These external fault sources or internal fault mechanisms are extremely difficult to detect. The data block capture and analysis monitoring process is concerned with detecting deviations from the normal performance of the system, known as errors, which are symptomatic of fault conditions. The process consists of repeatedly recording a fixed amount of data from a set of predetermined observation lines of the system being monitored (i.e., capturing a block of data) and then analyzing the captured block in an attempt to determine whether the system is functioning correctly. The performances of linear, quadratic, and logarithmic data analysis algorithms are rigorously characterized in terms of the probability of correctly detecting an error, the expectation and variance of the number of false alarms per error, and the expectation and variance of the latency in detection of errors. Insight into the nature of the general problem of error detection is obtained.

Blough, Douglas M.↗

NASA NTRS1994

Joint IAMAS/IAHS Symposium J1 on Global Monitoring and Advanced Observing Techniques in the Atmosphere and Hydrosphere

Seventy papers were presented at the two-and-a-half-day Symposium on Global Monitoring and Advanced Observing Techniques in the Atmosphere and Hydrosphere. The symposium was jointly organized by the International Association of Meteorology and Atmospheric Sciences (IAMAS) and the International Association of Hydrological Sciences (IAHS). Global observing systems are receiving increased attention in connection with such problems as monitoring global climate change. The symposium included papers on observational requirements; measurement methodologies; descriptions of available datasets; results of analysis of observational data; plans for future observing systems, including the Global Climate Observing System (GCOS) and the Global Ocean Observing System (GOOS); and the programs and plans of the space agencies.

Ohring, G.↗

NASA NTRS1990

Space vehicle propulsion systems - Environmental space hazards

An evaluation of hazards which exist in geo-lunar space and have the potential to negatively affect a long-term mission-oriented spacecraft systems is presented based on published data. The hazards are categorized as pervasive (radiation), incident specific (meteoroids and thermal shock), and chemically corrosive (monatomic oxygen). It appears that the number one priority should be the development of new materials; and the secondary concern should be the development of fabrication techniques for the exterior hull, so that incident specific hazards can be minimized in an active fashion. The pervasive hazard can be dealt with by exploring on-board circuit technology with ancillary monitoring systems. Effects of thermal shock on the exterior nozzle, directional gimbals, and internal combustion chamber geometry seem to need more investigation.

Bahr, G. K.↗

NASA NTRS2021

Concurrent Runtime Verification of Data Rich Events

This paper presents the open source runtime verification tool MESA (MEssage-based System Analysis), implemented in Scala, which supports concurrent monitors using the Actor model. Furthermore, the tool supports indexing (slicing) on the data values occurring in data-carrying events, for each individual monitor. The tool is generic in the sense that any monitoring system can be used for creating monitors. In this paper, we use the internal Scala DSL Daut for programming such in data parameterized state machines and temporal logic. To illustrate MESA/Daut, we present a case study that monitors flights from live U.S. airspace data streams, verifying that they conform to planned routes. With base in the case study, we then perform an extensive empirical study of the potential benefits from monitoring slices of a single property in concurrently executing actors. Due to the overhead of scheduling “small” actors (one for each slice or a small number of slices), it is not obvious that concurrent execution of such is beneficial. However, as a main result, we demonstrate that concurrent monitoring of slices to handle data-carrying events can provide considerable speed gains.

finite state machines↗

NASA NTRS2014

Monitoring with Data Automata

We present a form of automaton, referred to as data automata, suited for monitoring sequences of data-carrying events, for example emitted by an executing software system. This form of automata allows states to be parameterized with data, forming named records, which are stored in an efficiently indexed data structure, a form of database. This very explicit approach differs from other automaton-based monitoring approaches. Data automata are also characterized by allowing transition conditions to refer to other parameterized states, and by allowing transitions sequences. The presented automaton concept is inspired by rule-based systems, especially the Rete algorithm, which is one of the well-established algorithms for executing rule-based systems. We present an optimized external DSL for data automata, as well as a comparable unoptimized internal DSL (API) in the Scala programming language, in order to compare the two solutions. An evaluation compares these two solutions to several other monitoring systems.

log analysis↗

NASA NTRS2020

Culture-Based Environmental Microbiology Monitoring of Crop-Based Space Food Systems (veggie Monitoring)

Crewmembers live and work in a closed environment that is monitored to ensure their health and safety. Quarterly monitoring of the microorganisms in the International Space Station (ISS) environment supports crew safety and contributes to a large set of microbial concentration and diversity data from air, surfaces and water samples. This study leverages quarterly operational Environmental Health System (EHS) sampling by collecting additional microbial samples from the surface of the station’s Veggie plant production system. Longer exploration missions may require spaceflight-based systems for growth of plants, and this investigation is expected to provide additional data to help establish requirements to protect these systems, plants, and crew, mitigating adverse microbial exposure.

Hamilton, Tanner↗

NASA NTRS2022

2022 Annual Report: Culture-Based Environmental Microbiology Monitoring of Crop-based Space Food Systems (Veggie Monitoring)

Crewmembers live and work in a closed environment that is monitored to ensure their health and safety. Quarterly monitoring of the microorganisms in the International Space Station (ISS) environment supports crew safety and contributes to a large set of environmental microbial data from the air, surface, and water samples that are collected. This study leverages quarterly operational Environmental Health System (EHS) sampling by collecting additional microbial samples from the surface of the station’s Veggie plant production system. Longer exploration missions may require spaceflight-based systems for growth of plants, and this investigation is expected to provide additional data to help establish requirements to protect these systems, plants, and crew, mitigating adverse microbial exposure.

Tanner Hamilton↗