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DOE OSTI2024

Multi-omics Resources for Understanding Gene Regulation in Response to ER Stress in Plants

Proteotoxic stress of the endoplasmic reticulum (ER) is a potentially lethal condition that ensues when the biosynthetic capacity of the ER is overwhelmed. A sophisticated and largely conserved signaling, known as the unfolded protein response (UPR), is designed to monitor and alleviate ER stress. In plants, the emerging picture of gene regulation by the UPR now appears to be more complex than ever before, requiring multi-omics-enabled network-level approaches to be untangled. In the past decade, with an increasing access and decreasing costs of next-generation sequencing (NGS) and high-throughput protein–DNA interaction (PDI) screening technologies, multitudes of global molecular measurements, known as omics, have been generated and analyzed by the research community to investigate the complex gene regulation of plant UPR. In this chapter, we present a comprehensive catalog of omics resources at different molecular levels (transcriptomes, protein–DNA interactomes, and networks) along with the introduction of key concepts in experimental and computational tools in data generation and analyses. Finally, this chapter will serve as a starting point for both experimentalists and bioinformaticians to explore diverse omics datasets for their biological questions in the plant UPR, with likely applications also in other species for conserved mechanisms.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2021

Colorado Elevation Gradient Snowmelt Manipulation Plant Phenology 2017-2018

This dataset includes observations of plant phenology at five locations along an elevation gradient in Crested Butte, Colorado. Observations occurred over the years 2017 and 2018. Observations taken in 2018 are associated with an experimental early snowmelt manipulation. The file PhenologyData_complete.txt contains raw data of phenology observations for each year, at each site, for each species within 1mX1m subplots. The file Phenology Data Package.docx contains information about sites, plots, and plant phenophases. These observations were taken to assess the temporal impact of early snowmelt perturbations on plant growth in the East River Valley. These data can be used to inform when and where plants may be using water resources throughout the season and how the phenology of plant communities in the watershed may respond to early snowmelt.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2020

A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci

Abstract Wild and weedy relatives of domesticated crops harbor genetic variants that can advance agricultural biotechnology. Here we provide a genome resource for the wild plant green millet ( Setaria viridis ), a model species for studies of C 4 grasses, and use the resource to probe domestication genes in the close crop relative foxtail millet ( Setaria italica ). We produced a platinum-quality genome assembly of S. viridis and de novo assemblies for 598 wild accessions and exploited these assemblies to identify loci underlying three traits: response to climate, a ‘loss of shattering’ trait that permits mechanical harvest and leaf angle, a predictor of yield in many grass crops. With CRISPR–Cas9 genome editing, we validated Less Shattering1 ( SvLes1 ) as a gene whose product controls seed shattering. In S. italica , this gene was rendered nonfunctional by a retrotransposon insertion in the domesticated loss-of-shattering allele SiLes1-TE (transposable element). This resource will enhance the utility of S. viridis for dissection of complex traits and biotechnological improvement of panicoid crops.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2025

Hemicellulose Modulates Nanoscale Lignin Architecture in Synthetic Plant Cell Walls

Cellulose, hemicellulose, and lignin─the most abundant biopolymers on Earth─compose the structural matrix of plant biomass, providing renewable resources critical to bioenergy and sustainable materials. Despite their importance, the nanoscale mechanochemical processes underlying lignocellulose assembly during plant secondary cell wall formation remain poorly understood, hindering advancements in biomass conversion technologies. Here, in this study, we synthesize a biomimetic model system comprising cellulose–hemicellulose nanofibrils (CHN) to examine guaiacyl lignin polymerization in a physiologically relevant context. Using advanced nanocharacterization─scattering-type scanning near-field optical microscopy (s-SNOM) with infrared nanospectroscopy coupled to solid-state nuclear magnetic resonance (NMR)─we reveal that hemicellulose presence considerably modulates lignin deposition and alters its interunit bond distribution. Specifically, hemicellulose-rich environments dramatically reduce lignin deposition by approximately 50% and yield highly condensed lignin structures characterized by severely reduced β–O–4′ linkages (<2%) and suppressed β–β′ linkages. Conversely, cellulose-alone scaffolds support notably higher β–O–4′ content (∼10%), resulting in a more uniform nanoscale lignin coating. Our work helps explain how accessible hemicellulose sites, both sterically and chemically, direct radical coupling during lignification, fundamentally reshaping lignin’s nanoscale architecture. These findings deepen our mechanistic understanding of plant cell wall biosynthesis and inform strategies aimed at enhancing biomass deconstruction efficiency for sustainable bioenergy applications.

NMR↗

DOE OSTI2020

Mutualism increases diversity, stability, and function of multiplex networks that integrate pollinators into food webs

Ecosystems are composed of complex networks of many species interacting in different ways. While ecologists have long studied food webs of feeding interactions, recent studies increasingly focus on mutualistic networks including plants that exchange food for reproductive services provided by animals such as pollinators. Here, we synthesize both types of consumer-resource interactions to better understand the controversial effects of mutualism on ecosystems at the species, guild, and whole-community levels. We find that consumer-resource mechanisms underlying plant-pollinator mutualisms can increase persistence, productivity, abundance, and temporal stability of both mutualists and non-mutualists in food webs. These effects strongly increase with floral reward productivity and are qualitatively robust to variation in the prevalence of mutualism and pollinators feeding upon resources in addition to rewards. This work advances the ability of mechanistic network theory to synthesize different types of interactions and illustrates how mutualism can enhance the diversity, stability, and function of complex ecosystems.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2021

RhizoVision Explorer: open-source software for root image analysis and measurement standardization

Abstract Roots are central to the function of natural and agricultural ecosystems by driving plant acquisition of soil resources and influencing the carbon cycle. Root characteristics like length, diameter and volume are critical to measure to understand plant and soil functions. RhizoVision Explorer is an open-source software designed to enable researchers interested in roots by providing an easy-to-use interface, fast image processing and reliable measurements. The default broken roots mode is intended for roots sampled from pots and soil cores, washed and typically scanned on a flatbed scanner, and provides measurements like length, diameter and volume. The optional whole root mode for complete root systems or root crowns provides additional measurements such as angles, root depth and convex hull. Both modes support providing measurements grouped by defined diameter ranges, the inclusion of multiple regions of interest and batch analysis. RhizoVision Explorer was successfully validated against ground truth data using a new copper wire image set. In comparison, the current reference software, the commercial WinRhizo™, drastically underestimated volume when wires of different diameters were in the same image. Additionally, measurements were compared with WinRhizo™ and IJ_Rhizo using a simulated root image set, showing general agreement in software measurements, except for root volume. Finally, scanned root image sets acquired in different labs for the crop, herbaceous and tree species were used to compare results from RhizoVision Explorer with WinRhizo™. The two software showed general agreement, except that WinRhizo™ substantially underestimated root volume relative to RhizoVision Explorer. In the current context of rapidly growing interest in root science, RhizoVision Explorer intends to become a reference software, improve the overall accuracy and replicability of root trait measurements and provide a foundation for collaborative improvement and reliable access to all.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2020

Integration of a Concentrating Solar Steam Topping Turbine to an Existing Geothermal Binary Power Plant (CRADA CRD-17-700 Final Report)

U.S. Geothermal Inc. is a publicly traded leading renewable energy company focused on the development, production, and sale of electricity from geothermal energy with operating generation facilities at Raft River, Idaho; San Emidio, Nevada; and Neal Hot Springs, Oregon. (U.S. Geothermal was acquired by Ormat Technologies, Inc. since the execution of this project). This project will evaluate the integration of a concentrating solar steam topping cycle with a geothermal bottoming binary cycle. This hybrid plant configuration will enable high efficiency conversion of the solar heat to electrical power, while simultaneously increasing the power output of the bottoming cycle. Such a design has the potential to reduce the cost of electrical power from concentrating solar power (CSP) and geothermal plants, and a viable design could be deployed at existing geothermal plants that have experienced resource productivity decline as well as in greenfield projects. This analysis will examine US Geothermal’s Raft River power plant for implementation of this concept. INL and NREL have previously collaborated in the analysis of geo-solar hybrid power plants. These two labs will again work together to model the solar field, steam-topping, and geothermal bottoming cycles in order to investigate the performance of the proposed cycle. This analysis will provide US Geothermal with technical information including equipment specifications and estimated power generation necessary to advance the concept toward implementation. A successful project outcome has two parts: One would be for US Geothermal to have a process flow diagram (heat and mass balance), and performance parameters for the major pieces of equipment. US Geothermal could then use this information evaluate the techno-economic feasibility of the hybrid power cycle, and serve as the basis for subsequent detailed equipment design, purchase, and installation of the cycle. The second would be for the developed solution to be published by DOE for use by other geothermal developers both to retrofit underperforming plants and to lower the LCOE of new developments.

15 GEOTHERMAL ENERGY↗

DOE OSTI2022

An independent analysis of bias sources and variability in wind plant pre-construction energy yield estimation methods

The wind resource assessment community has long had the goal of reducing the bias between wind plant pre-construction energy yield assessment (EYA) and the observed annual energy production (AEP). This comparison is typically made between the 50% probability of exceedance (P50) value of the EYA and the long-term corrected operational AEP (hereafter OA P50), and is known as the P50 bias. The industry has critically lacked an independent analysis of bias reduction investigated across multiple consultants to identify the greatest sources of uncertainty and variance in the EYA process and the best opportunities for uncertainty reduction. The present study addresses this gap by benchmarking consultant methodologies against each other and against operational data at a scale not seen before in industry collaborations. We consider data from 10 wind plants and evaluate discrepancies between eight consultancies in the steps taken from estimates of gross to net energy. Consultants tend to overestimate the gross energy produced at the turbines and then compensate by further overestimating downstream losses, leading to a mean P50 bias near zero, still with significant variability among the individual wind plants. Within our data sample, we find that consultant estimates of all loss categories, except environmental losses, tend to reduce the project-to-project variability of the P50 bias. The disagreement between consultants, however, remains flat throughout the addition of losses. Finally, we find that differences in consultants’ estimates of project performance can lead to differences up to $10/MWh in the levelized cost of energy for a wind plant.

Todd, Austin C.↗

DOE OSTI2021

Dynamic Interaction of Grid-Forming and Grid-Following Inverters with Synchronous Generators in Hybrid Power Plants

As the integration of renewable energy resources such as wind and solar generation continues to grow, the use of hybrid power plants with both synchronous machines and power electronic inverters operating in parallel becomes more common. This paper studies the impact on small-signal stability for these pairs of devices, first as an isolated two-device system and then as part of a 9-bus test system. Each operational scenario was studied with both a grid-following inverter and a grid-forming inverter. In each scenario, the state variables associated with the synchronous generator's excitation system were found to be responsible for the inception of instability. These results underscore the importance of accurate modeling of excitation systems when modeling power systems with hybrid power plants.

hybrid power plant↗

DOE OSTI2024

FatPlants: a comprehensive information system for lipid-related genes and metabolic pathways in plants

Abstract FatPlants, an open-access, web-based database, consolidates data, annotations, analysis results, and visualizations of lipid-related genes, proteins, and metabolic pathways in plants. Serving as a minable resource, FatPlants offers a user-friendly interface for facilitating studies into the regulation of plant lipid metabolism and supporting breeding efforts aimed at increasing crop oil content. This web resource, developed using data derived from our own research, curated from public resources, and gleaned from academic literature, comprises information on known fatty-acid-related proteins, genes, and pathways in multiple plants, with an emphasis on Glycine max, Arabidopsis thaliana, and Camelina sativa. Furthermore, the platform includes machine-learning based methods and navigation tools designed to aid in characterizing metabolic pathways and protein interactions. Comprehensive gene and protein information cards, a Basic Local Alignment Search Tool search function, similar structure search capacities from AphaFold, and ChatGPT-based query for protein information are additional features. Database URL: https://www.fatplants.net/

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2026

Plant-Nitrifier Interactions in Topsoil and Subsoil

Plants can influence soil microbes through resource acquisition and interference competition, with consequences for ecosystem function such as nitrification. However, how plants alter soil conditions to influence nitrifiers and nitrification rates remains poorly understood, especially in the subsoil. Here, coupling the 15N isotopic pool dilution technique, high throughput sequencing and in situ soil O2 monitoring, we investigated how a deep-rooted perennial grass, miscanthus, versus an adjacent shallow-rooted turfgrass reference shapes nitrifier assembly and function along 1 m soil profiles. In topsoil, the suppression of ammonia (NH3) oxidizing archaea (AOA) and gross nitrification rates in miscanthus relative to the reference likely resulted from nitrifiers being outcompeted by plant roots and heterotrophic bacteria for ammonium (NH4+). The stronger tripartite competition under miscanthus may have been caused in part by the lower soil organic matter (SOM) content, which supported lower gross nitrogen (N) mineralization, the major soil process that produces NH4+. In contrast, below 10 cm soil depth, significantly greater gross nitrification rates were observed in miscanthus compared to the reference. This was likely driven by the significantly lower oxygen (O2) in miscanthus than reference subsoil, which selected against aerobic heterotrophic bacteria but in favor of AOA. Overall, we found that plants can regulate AOA community structure and function through different mechanisms in topsoil and subsoil, with suppression of nitrification in topsoil and enhancement of nitrification in subsoil.

Field Data↗

DOE OSTI2022

Hanford Site Rare Plant Monitoring Report for Calendar Year 2022

Rare plants are monitored on the Hanford Site as distribution and abundance data of current and historic rare plant populations are necessary to make well-informed environmental and ecological resource management decisions. The Central Hanford Rare Plant Management Plan (DOE/RL-2021-35) guides rare plant monitoring methodology in the context of resource management at the Hanford Site. In 2022, a rare plant monitoring effort occurred on the portion of the Hanford Site (referred to herein as Central Hanford) managed by the U.S. Department of Energy, Richland Operations Office (DOE-RL; Figure 1). The goal of this effort was to revisit known occurrences of upland rare plant populations on Central Hanford to improve baseline information on locations of rare plant populations on the Hanford Site. Rare upland plants were thoroughly surveyed in 2021 but unusually low precipitation that year limited germination of many upland annual plants. Surveys in 2022 focused on rare upland annual species after the Hanford Site received higher than average spring precipitation that was expected to increase germination. Rainfall from April 2022 to June 2022 was 76% higher than average; however, these months were also colder than average. Winter rainfall from January 2022 to March 2022 was 84% lower than average. The high spring precipitation in 2022 appears to have triggered the germination of some populations of rare upland annuals but the dry winter and cold spring may have inhibited others. Population stability, viability, and threats were evaluated and will be used to inform future management of rare plant species.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2024

Optimal hybrid power plants for electric vehicle charging demand

Transmission constraints, increasing motivations to decarbonize, and concerns over peak electric vehicle (EV) load impacts on local grids have driven electric customers to consider behind-the-meter, hybrid power plant generation and storage at the distributed-grid level for EV charging. In this study, we develop capabilities to optimize hybrid power plant component capacities for EV charging. We then demonstrate these capabilities in a case study for Boulder, Colorado, using public EV charging data as well as wind and solar resource data. Our results show system designs that balance the cost of energy with load-meeting and peak shaving performance. Within the case study, systems designed for wind, solar photovoltaic (PV), and storage resulted in lower cost of energy than those optimized for PV and storage only. This indicates that in areas where wind resource exists, hybrid power plants that include wind, PV, and battery assets can better meet EV charging loads (including peak loads that are prone to overloading local grids) than PV and battery assets alone. Future work to address limitations in this paper include extending cost modeling to include performance losses (e.g., based on operations or weather) and charging station costs to estimate levelized cost of charging, and quantifying uncertainty and error in our aggregation methods for estimating EV charging loads at the hourly timescale.

14 SOLAR ENERGY↗

DOE OSTI2023

Using energy storage systems to extend the life of hydropower plants

Despite their advantages, distributed energy resources (DERs) bring inherent uncertainty and variability into the landscape of modern power systems. As DER penetration grows, conventional generators like hydropower plants have to respond more often to arrest the imbalance in the net load. Hydropower turbines provide their best operational performance with minimal wear and tear when operating at regions of maximum efficiency. However, the current needs for hydropower plants require them to operate under varying load conditions and thus sub-optimal operating points leading to additional stress. To relieve the hydropower plants, this paper proposes a hybridization strategy where a hydropower unit is paired with an energy storage system (ESS) to increase operational flexibility and mitigate damage to the hydro plant. Models are developed to represent the operation of the hybrid system, quantify degradation, and assess economic benefits. Moreover, an innovative controller disaggregates the market dispatch signal into separate control setpoints for the ESS and hydropower unit. In case studies performed on a real-world hydropower facility, it was found that the ESS-based hybridization can extend the life of the hydropower plant by 5% on average. Notably, the economic benefits from reduced maintenance and deferred investment are estimated to be around $3.6 million.

13 HYDRO ENERGY↗

DOE OSTI2022

Opportunities for Recovering Resources from Municipal Wastewater

Municipal wastewater contains valuable resources including water, energy, and nutrients that often enter and leave wastewater treatment plants (WWTPs) without being captured. Currently, plants are increasingly seeking to recover resources and reuse them in a sustainable way. Therefore, the purpose of this project was to assess the potential for recovery and reuse of water and products from municipal wastewater treatment plants across the United States and to examine how this potential varies by region. To accomplish this, three main tasks were set: first, to characterize wastewater treatment plants; second, to characterize technologies and pathways used to recover energy, nutrients, and water from treatment plants; third, to assess the demand for reclaimed resources and products at a regional level by performing spatial analysis. These three tasks were then synthesized to present key findings in this report and a geospatial dataset with the hope of guiding the increased use of resource recovery technologies in the U.S.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2021

Objective and algorithm considerations when optimizing the number and placement of turbines in a wind power plant

Abstract. Optimizing turbine layout is a challenging problem that has been extensively researched in the literature. However, optimizing the number of turbines within a given boundary has not been studied as extensively and is a difficult problem because it introduces discrete design variables and a discontinuous design space. An essential step in performing wind power plant layout optimization is to define the objective function, or value, that is used to express what is valuable to a wind power plant developer, such as annual energy production, cost of energy, or profit. In this paper, we demonstrate the importance of selecting the appropriate objective function when optimizing a wind power plant in a land-constrained site. We optimized several different wind power plants with different wind resources and boundary sizes. Results show that the optimal number of turbines varies drastically depending on the objective function. For a simple, one-dimensional, land-based scenario, we found that a wind power plant optimized for minimal cost of energy produced just 72 % of the profit compared to the wind power plant optimized for maximum profit, which corresponded to a loss of about USD 2 million each year. This paper also compares the performance of several different optimization algorithms, including a novel repeated-sweep algorithm that we developed. We found that the performance of each algorithm depended on the number of design variables in the problem as well as the objective function.

17 WIND ENERGY↗

DOE OSTI2022

Nontechnical Barriers to Geothermal Development

Geothermal energy presents a significant opportunity for the United States (US). The US has the largest known geothermal resource in the world, with over 31 GW of conventional geothermal (i.e., hydrothermal) potential. Despite this, the development of geothermal power plants has lagged other renewable resources. Though some of the gaps stem from technical barriers numerous non-technical barriers are preventing geothermal energy from reaching its full potential. The gaps include a need to reduce the cost impacts of seismic risk, environmental risk, exploration, drilling and permitting cost risk, and reduced summer capacity on plant profitability. This report identifies pathways to overcome these barriers. We find that geothermal energy could increase its market presence by acting as a complement to lower cost renewables, providing flexible or baseload power in low carbon scenarios. We also outline several contractual and operational strategies (including the use of hybrid systems) that plant operators can pursue to improve the value of their resource, such as multi part remuneration mechanisms that guarantee revenue (e.g., availability payments or a Contract for Differences approach) or resource risk hedging approaches (e.g., shaped market products and portfolio resource approaches).

15 GEOTHERMAL ENERGY↗

DOE OSTI2023

High-Performance Computing Based EMT Simulation of Large PV or Hybrid PV Plants

Faults in the transmission grid have led to reduced power generation from power electronics resources that are typically not connected to the faulted transmission line. In many of the cases, partial loss of power is observed within the power electronics resources like large photovoltaic (PV) power plants. This phenomena is not captured in existing simulation models and/or simulators. High-fidelity switched system electromagnetic transient (EMT) dynamic models of PV power plants can improve the fidelity of models available for accurate analysis of the impact on PV plants during simulation of faults. However, these models are extremely computationally expensive and take a long time to simulate. Long simulation times limit the ability to use these models as larger regions are studied in EMT simulations with more power electronics resources. In this paper, numerical simulation algorithms are combined with high-performance computing techniques and applied to the high-fidelity switched system EMT model of PV plants. Using these techniques, a speed-up of up to 58x is obtained, while preserving the accuracy of the simulation at greater than 98%.

Debnath, Suman↗