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At least 109 records · Page 6

Asynchronous and Load-Balanced Union-Find for Distributed and Parallel Scientific Data Visualization and Analysis

We present a novel distributed union-find algorithm that features asynchronous parallelism and k-d tree based load balancing for scalable visualization and analysis of scientific data. Applications of union-find include level set extraction and critical point tracking, but distributed union-find can suffer from high synchronization costs and imbalanced workloads across parallel processes. In this study, we prove that global synchronizations in existing distributed union-find can be eliminated without changing final results, allowing overlapped communications and computations for scalable processing. We also use a k-d tree decomposition to redistribute inputs, in order to improve workload balancing. We benchmark the scalability of our algorithm with up to 1,024 processes using both synthetic and application data. Here, we demonstrate the use of our algorithm in critical point tracking and super-level set extraction with high-speed imaging experiments and fusion plasma simulations, respectively.

97 MATHEMATICS AND COMPUTING↗

Mixed stochastic-deterministic density functional theoretic decomposition of Kubo–Greenwood conductivities in the projector augmented wave formalism

Pairing the accuracy of the Kohn–Sham density-functional framework with the efficiency of a stochastic algorithmic approach, mixed stochastic-deterministic density functional theory (mDFT) achieves a favorable computational scaling with system sizes and electronic temperatures. We employ the recently developed mDFT formalism to investigate the dynamic charge-transport properties of systems in the warm dense matter regime. The optical conductivity spectra are computed for single- and multi- component mixtures of carbon, hydrogen, and beryllium using two complementary approaches: Kubo–Greenwood in the mDFT picture and real-time time-dependent mDFT. We further devise a decomposition of the Onsager coefficients leading up to the Kubo–Greenwood spectra to exhibit contributions from the deterministic, stochastic, and mixed electronic state transitions at different incident photon energies.

36 MATERIALS SCIENCE↗

Degradation Diagnostics from the Subsurface of Lithium-Ion Battery Electrodes

Despite the long-established rocking-chair theory of lithium-ion batteries (LIBs), developing novel characterization methodology with higher spatiotemporal resolution facilitates a better understanding of the solid electrolyte interphase studies to shape the reaction mechanisms. In this work, we develop a Xenon ion plasma focused ion beam (Xe + PFIB)-based characterization technique to probe the cross-sectional interface of both ternary cathode and graphite anode electrodes, with the focus on revealing the chemical composition and distribution underneath the electrode surface by in-depth analysis of secondary ions. Particularly, the lithium fluoride is detected in the pristine cathode prior to contact with the electrolyte, reflecting that the electrode degradation is in the form of the loss of lithium inventory during electrode preparation. This degradation is related to the hydrolysis of the cathode material and the decomposition of the PVDF binder. Here, through the quantitative analysis of the transition-metal degradation products, manganese is found to be the dominant element in the newly formed inactive fluoride deposition on the cathode, while no transition metal signal can be found inside the anode electrode. These insights at high resolution implemented via a PFIB-based characterization technique not only enrich the understanding of the degradation mechanism in the LIBs but also identify and enable a high-sensitivity methodology to obtain the chemical survey at the subsurface, which will help remove the capacity-fade observed in most LIBs.

25 ENERGY STORAGE↗

Velocity-space Origins of the Pressure–Strain Interaction in Multipopulation Distributions and Its Application to Magnetic Reconnection

A forefront research question is how energy evolves in weakly collisional plasmas for which departures from local thermodynamic equilibrium (LTE) are significant. The standard approach is studying the terms in the non-LTE energy evolution equation derived by taking the second moment of the Boltzmann equation, but the resultant fluid metrics do not retain information about which particles at which velocities drive energy evolution. A widely studied channel for internal energy density evolution is the pressure–strain interaction. Here, we employ the kinetic pressure–strain, a phase-space diagnostic whose velocity-space integral recovers the pressure–strain interaction to disambiguate the contributions to the pressure–strain interaction from disparate particle populations in composite phase-space densities. We develop phase-space analogs of the pressure–strain interaction decompositions to provide the phase-space origins of normal versus sheared flow. We introduce the “kinetic strain-rate” tensor, the phase-space analog of the strain-rate tensor, which we argue is needed to interpret the phase-space origins of the pressure–strain interaction. To demonstrate the utility of these quantities, we investigate them for composite electron distributions near the electron diffusion region in two-dimensional particle-in-cell simulations of antiparallel symmetric magnetic reconnection. We find that the phase-space-based diagnostics isolate the roles of distinct populations. These results contribute to a growing body of work providing new methods for quantifying phase-space energy evolution for a broad array of processes, from magnetic reconnection to collisionless shocks and turbulence, opening new pathways for answering longstanding problems of particle energization in weakly collisional plasmas.

79 ASTRONOMY AND ASTROPHYSICS↗

Dynamic mode decomposition for gyrokinetic eigenmode analysis

Dynamic mode decomposition (DMD) is a post-processing approach to decompose a complex time series into a set of modes via spectral analysis. DMD provides a new and powerful method to recover gyrokinetic drift-wave eigenfrequencies and eigenfunctions based only on the solution of the gyrokinetic-Maxwell initial value problem with almost no added cost to the initial value solver. In the present paper, DMD is applied to the CGYRO gyrokinetic code using a newly-developed CGYRO-DMD post-processor. CGYRO-DMD is numerically efficient, even on a single CPU. It does not set any restrictions on the plasma shape, beta (ratio of the plasma pressure to the magnetic field pressure), collisionality or number of species, and allows one to resolve numerous eigenmodes, even of comparable growth rates. In addition, DMD is not limited to unstable modes, but rather can capture stable and unstable branches simultaneously. In this work, we illustrate the accuracy of DMD through gyrokinetic analysis of mode transition for electromagnetic drift wave instabilities.

drift-wave eigenmodes↗

Taking control of compressible modes: bulk viscosity and the turbulent dynamo

Many polyatomic astrophysical plasmas are compressible and out of chemical and thermal equilibrium, introducing a bulk viscosity into the plasma via the internal degrees of freedom of the molecular composition, directly impacting the decay of compressible modes, $\mathrm{{\boldsymbol {\mathit {v}}}}_{\parallel }(\boldsymbol {k})$. This is especially important for small-scale, turbulent dynamo processes in the interstellar medium (ISM), which are known to be sensitive to the effects of compression. To control the viscous properties of $\mathrm{{\boldsymbol {\mathit {v}}}}_{\parallel }(\boldsymbol {k})$, we perform trans-sonic, visco-resistive dynamo simulations with additional bulk viscosity $\nu _{\text{bulk}}$, deriving a new $\nu _{\text{bulk}}$ Reynolds number $\text{Re}_{\text{bulk}}$, and viscous Prandtl number $\text{P}\nu \equiv \text{Re}_{\text{bulk}}/ \text{Re}_{\text{shear}}$, where $\text{Re}_{\text{shear}}$ is the shear viscosity Reynolds number. We derive a framework for decomposing $E_{\rm mag}$ growth rates into incompressible and compressible terms via orthogonal tensor decompositions of $\boldsymbol {\nabla }\otimes \mathrm{{\boldsymbol {\mathit {v}}}}$, where $\mathrm{{\boldsymbol {\mathit {v}}}}$ is the fluid velocity. We find that $\mathrm{{\boldsymbol {\mathit {v}}}}_{\parallel }(\boldsymbol {k})$ play a dual role, growing and decaying $E_{\rm mag}$, and that field-line stretching is the main driver of growth, even in compressible dynamos. In the absence of $\nu _{\text{bulk}}$ ($\text{P}\nu \rightarrow \infty$), $\mathrm{{\boldsymbol {\mathit {v}}}}_{\parallel }(\boldsymbol {k})$ pile up on small-scales, creating a spectral bottleneck, which disappears for $\text{P}\nu \approx 1$. As $\text{P}\nu$ decreases, $\mathrm{{\boldsymbol {\mathit {v}}}}_{\parallel }(\boldsymbol {k})$ are dissipated at increasingly larger scales, in turn suppressing incompressible modes through a coupling between high-k modes. We emphasize the importance of further understanding the role of $\nu _{\text{bulk}}$ in compressible astrophysical plasmas, which we estimate could be as strong as the shear viscosity in the cold ISM, and highlight that compressible direct numerical simulations without bulk viscosity have unresolved compressible mode dissipation scales.

MHD↗

Constraints on ion velocity distributions from fusion product spectroscopy

Abstract Recent inertial confinement fusion experiments have shown primary fusion spectral moments which are incompatible with a Maxwellian velocity distribution description. These results show that an ion kinetic description of the reacting ions is necessary. We develop a theoretical classification of non-Maxwellian ion velocity distributions using the spectral moments. At the mesoscopic level, a monoenergetic decomposition of the velocity distribution reveals there are constraints on the space of spectral moments accessible by isotropic distributions. General expressions for the directionally dependent spectral moments of anisotropic distributions are derived. At the macroscopic level, a distribution of fluid element velocities modifies the spectral moments in a constrained manner. Experimental observations can be compared to these constraints to identify the character and isotropy of the underlying reactant ion velocity distribution and determine if the plasma is hydrodynamic or kinetic.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Pit rim decomposition into multiple quantum dots on surfaces of epitaxial thin films grown on pit-patterned substrates

Here, we report results of dynamical simulations according to an experimentally validated surface morphological evolution model on the formation of regular arrays of quantum dot molecules (QDMs) consisting of 1D arrays of smaller interacting quantum dots (QDs). These QD arrays form along the sides of each pit rim on the surface of a coherently strained thin film epitaxially deposited on a semiconductor substrate, the surface of which consists of a periodic pattern of inverted prismatic pits with rectangular pit openings. We find that this complex QDM pattern results from the decomposition of the pit rim from a “quantum fortress” with four elongated QDs into four 1D arrays of multiple smaller QDs arranged along each side of the pit rim. Systematic parametric analysis indicates that varying the pit opening dimensions and the pit wall inclination directly impacts the number of QDs in the resulting QDM pattern, while varying the pit depth only affects the dimensions of the QDs in the nanostructure pattern. Therefore, the number, arrangement, and sizes of QDs in the resulting pattern of QDMs on the film surface can be engineered precisely by proper tuning of the pit design parameters. Our simulation results are supported by predictions of morphological stability analysis, which explains the pit rim decomposition into multiple QDs as the outcome of a tip-splitting instability and provides a fundamental characterization of the post-instability nanostructure pattern. Our theoretical findings can play a vital role in designing optimal semiconductor surface patterns toward enabling future nanofabrication technologies.

36 MATERIALS SCIENCE↗

Small-amplitude Compressible Magnetohydrodynamic Turbulence Modulated by Collisionless Damping in Earth’s Magnetosheath: Observation Matches Theory

Plasma turbulence is a ubiquitous dynamical process that transfers energy across many spatial and temporal scales and affects energetic particle transport. Recent advances in the understanding of compressible magnetohydrodynamic (MHD) turbulence demonstrate the important role of damping in shaping energy distributions on small scales, yet its observational evidence is still lacking. This study provides the first observational evidence of substantial collisionless damping (CD) modulation on the small-amplitude compressible MHD turbulence cascade in Earth’s magnetosheath using four Cluster spacecraft. Based on an improved compressible MHD decomposition algorithm, turbulence is decomposed into three eigenmodes: incompressible Alfvén modes and compressible slow and fast (magnetosonic) modes. Our observations demonstrate that CD enhances the anisotropy of compressible MHD modes because CD has a strong dependence on wave propagation angle. The wavenumber distributions of slow modes are mainly stretched perpendicular to the background magnetic field (B 0 ) and weakly modulated by CD. In contrast, fast modes are subjected to a more significant CD modulation. Fast modes exhibit a weak, scale-independent anisotropy above the CD truncation scale. Below the CD truncation scale, the anisotropy of fast modes enhances as wavenumbers increase. As a result, fast-mode fractions in the total energy of compressible modes decrease with the increase of perpendicular wavenumber (to B 0 ) or wave propagation angle. Our findings reveal how the turbulence cascade is shaped by CD and its consequences for anisotropies in the space environment.

97 MATHEMATICS AND COMPUTING↗

On the Existence of Fast Modes in Compressible Magnetohydrodynamic Turbulence

Abstract We study the existence and properties of fast magnetosonic modes in 3D compressible MHD turbulence by carrying out a number of simulations with compressible and incompressible driving conditions. We use two approaches to determine the presence of fast modes: mode decomposition based on spatial variations only and spatio-temporal 4D fast Fourier transform (4D FFT) analysis of all fluctuations. The latter method enables us to quantify fluctuations that satisfy the dispersion relation of fast modes with finite frequency. Overall, we find that the fraction of fast modes identified via the spatio-temporal 4D FFT approach in total fluctuation power is either tiny with nearly incompressible driving or ∼2% with highly compressible driving. We discuss the implications of our results for understanding the compressible fluctuations in space and astrophysical plasmas.

79 ASTRONOMY AND ASTROPHYSICS↗

Manufacturing porous U-10Zr metallic fuels with controllable microstructure by volume control spark plasma sintering

In this paper, the volume control spark plasma sintering tool has been designed and applied to sinter porous U-10Zr metallic fuels, by which the sintered sample volume can be precisely controlled. Ethanol and NH 4 HCO 3 are used to control the powder compact or as pore formers to control the pore size and pore structure. Without pore formers, the fuel pellet displays an inhomogeneous microstructure consisting of highly porous and highly densified areas. Uneven powder stacking in the green body results in a non-uniform microstructure, and in the closed-packed area, Joule heating accelerates the neck formation and densification. The addition of ethanol reduces the friction between the powders, resulting in isolated pores formed by the stacking of powders during the sintering. By adding NH 4 HCO 3 , the pore size, and structure can be well controlled, and an interconnected pore structure can be obtained upon the decomposition of the NH 4 HCO 3 . Further, a uniform microstructure and pore distributions can be achieved through the U-10Zr fuel pellets by controlling current flow during the volume control SPS sintering. The microstructure and phase characterization of the sintered porous U-10Zr pellets show major phases of α-U and α-Zr for the sample with short dwelling. For the sample with long dwelling (30 min), the ω UZr 2 in the Zr-enriched area has been observed. The strategy of volume control SPS sintering with the assistance of pore formers could be used to fabricate porous U-10Zr metallic fuels to mimic the microstructure evolution of irradiated metallic fuels (including porosity) and could enable a possible solution for the design of new sodium-free metallic fuels for high burnup.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Densification and Immobilization of AgI-Containing Iodine Waste Forms Using Spark Plasma Sintering

Here in this study, porous Ag-xerogel (Ag-Xero), Ag-faujasite (Ag-FAU) zeolite, and Ag-mordenite (Ag-MOR) zeolite sorbents were loaded with iodine gas [I 2 (g)] under saturated conditions at 150 °C for 24 h, followed by densification and consolidation into monolithic waste forms using spark plasma sintering (SPS). For Ag-Xero materials, SPS pellets were made with as-loaded samples, while others were made with preheated (PH; 500 °C for 2 h) samples to help with densification. SPS processing was conducted at 50 MPa under different temperatures (T = 200–800 °C) for different times (t = 0.5–30 min), where eleven AgI-Xero samples, five AgI-FAU, and two AgI-MOR separate samples were produced. The primary goal was to look for the optimum processing parameters for each material to yield pellets with high iodine retentions, high densities, and low porosities while preventing AgI decomposition. The Ag-Xero showed the highest iodine loadings (qe = 470 mg g –1 ) compared to Ag-FAU (qe = 368 mg g –1 ) and Ag-MOR (qe = 108 mg g –1 ). Measured iodine concentrations were the highest in AgI-Xero pellets without PH, followed by AgI-Xero with PH, AgI-FAU, and then AgI-MOR. Silver utilization (I/Ag on a mol % basis) values were in the order of AgI-MOR ≈ AgI-Xero (no PH) > AgI-Xero (PH) > AgI-FAU. Chemical durabilities of SPS-densified AgI-Xero (PH) pellets were very favorable, with lower releases than SPS pellets made from AgI-Xero samples without PH. These results show promise for iodine waste form production.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Multilevel Techniques for Compression and Reduction of Scientific Data---The Unstructured Case

Previous work on multilevel techniques for compression and reduction of scientific data is extended to the case of data given on unstructured meshes in two and three dimensions. The centerpiece of the work is a decomposition algorithm which is shown to be optimal, in terms of both storage and operational complexity, applicable to unstructured grids in both two and three dimensions, and which implicitly gives a Riesz basis that can be exploited to reduce the data while maintaining rigorous bounds on the loss incurred. The flexibility of the approach is illustrated by applications to potential flow around an airfoil and the effect of compression on quantities of interest relevant to airfoil design; compression of computational simulation of a nonlinear reaction-diffusion system with special attention given to the problem of time series reduction; and, data from a simulation of magnetically confined plasma in a fusion reactor reduced so as to preserve the electric field computed from the data.

97 MATHEMATICS AND COMPUTING↗

Three-dimensional reconstruction of neutron, gamma-ray, and x-ray sources using a cylindrical-harmonics expansion

Inertial confinement fusion capsule implosions produce neutron, gamma-ray, and x-ray emission, which are recorded by a variety of detectors, both time integrated and time resolved, to determine the performance of the implosion. Further, two-dimensional emission images from multiple directions can now be combined to infer three-dimensional structures in the implosion, such as the distribution of thermonuclear fuel density, carbon ablator, and impurities. Because of the cost and complexity of the imaging systems, however, only a few measurements can be made, so reconstructions of the source must be made from a limited number of views. Here, a cylindrical-harmonics decomposition technique to reconstruct the three-dimensional object from two views in the same symmetry plane is presented. In the limit of zero order, this method recovers the Abel inversion method. The detailed algorithms used for this characterization and the resulting reconstructed neutron source from an experiment collected at the National Ignition Facility are presented.

47 OTHER INSTRUMENTATION↗

Methanol adsorption and dissociation on GaP(110) studied by ambient pressure X-ray photoelectron spectroscopy

Ambient pressure X-ray photoelectron spectroscopy (AP-XPS) was used to investigate methanol (CH 3 OH) adsorption and reaction on the GaP(110) surface. Exposure of CH 3 OH to GaP(110) at room temperature led to the formation of at least four different surface species as indicated by analysis of C 1s and O 1s XPS features. By combining AP-XPS data with density functional theory calculations, the surface species were identified as methoxy (CH 3 O*), formaldehyde (CH 2 O*), and paired methanol (p-CH 3 O*H) and methoxy (p-CH 3 O*) species, where “paired” means that they belong to a hydrogen-bonded methoxy-methanol complex. Asterisk * here indicates an adsite. The formation of CH 2 O* via the dehydrogenation of CH 3 O* was shown to be limited by the availability of vacant phosphorus (P) sites on GaP(110). With an increase in CH 3 OH pressure, the fractional coverage of CH 3 O* species reached 0.55, and the surface P sites were completely saturated with hydrogen. Under a constant CH 3 OH pressure of 0.5 Torr, the surface concentration of the paired species and of CH 2 O* remained constant until 400 K. At higher temperatures, thermally driven reactions led to a significant increase in the concentration of surface CH x * species, which suggests that C-O bond cleavage of the CH 3 O group is the dominant decomposition mechanism on GaP(110). In conclusion, based on the reactivity of GaP(110) toward CH 3 OH dehydrogenation, elevated temperatures and CH 3 OH pressures may be used to functionalize this surface.

36 MATERIALS SCIENCE↗

Chemically Amplified, Dry-Develop Poly(aldehyde) Photoresist

The catalytic decomposition of poly(phthalaldehyde) with a photoacid generator can be used as dry-develop photoresist, where the exposed film depolymerizes into small molecules to allow the development of features via controlled vaporization. Higher temperatures enabled shorter dry-development times, but also promoted faster photoacid diffusion that compromised pattern fidelity. Trihexylamine was used as a base quencher to counteract acid diffusion in a phthalaldehyde-propanal co-polymer photoresist. The propanal co-monomer in the polymer improves the vaporization rate because it has a higher vapor pressure than phthalaldehyde. Addition of the base quencher was found to improve the contrast, pattern fidelity, and ease-of-handling of the dry-develop resist in a direct-write UV lithography tool. The dry-development of 4 μ m features was achieved with no appreciable residue. For large area features, a spatially variable exposure method was used to direct the residue away from the exposed area. The gradient exposure method was used to produce 100 μ m features. Plasma etching after dry-development was also used to achieve residue-free dry-developed patterns. These results show the benefits of incorporating base additives into a dry-develop depolymerizable resist system and highlight the need for addressing residue formation.

Materials Science↗

Diagnosis of the imploding shell asymmetry in polar-direct-drive deuterium–tritium cryogenic target implosions on OMEGA

We discuss the analyses of gated, x-ray imaging data from polar-direct-drive experiments with cryogenically layered deuterium–tritium targets on the OMEGA laser. The in-flight shell asymmetries were diagnosed at various times during the implosion, which was caused by the beam pointing geometry and preimposed variations in the energy partition between the different groups of laser beams. The shape of the ablation surface during the acceleration phase of the implosion was measured along two different lines of sight, and a Legendre mode (ℓ-mode) decomposition was applied for modes of up to ten to investigate shell asymmetries. A clear causal relationship between the imposed beam imbalance and the shape of the in-flight shell asymmetries was observed. The imploded shell with a balanced energy ratio shows smaller values of the amplitudes of ℓ-mode 2 compared to that from implosions with an imbalanced ring energy ratio. The amplitudes of ℓ-modes 4 and 6 are the same within the measurement uncertainty with respect to the change in beam energy ratio.

47 OTHER INSTRUMENTATION↗

ATEQ: Adaptive toroidal equilibrium code

A radially adaptive numerical scheme is developed to solve the Grad–Shafranov equation for axisymmetric magnetohydrodynamic equilibrium. Here, a decomposition with independent solutions is employed in the radial direction, and Fourier decomposition is used in the poloidal direction. The independent solutions are then obtained using an adaptive shooting scheme together with the multi-region matching technique in the radial direction. Accordingly, the adaptive toroidal equilibrium (ATEQ) code is constructed for axisymmetric equilibrium studies. The adaptive numerical scheme in the radial direction improves considerably the accuracy of the equilibrium solution. The decomposition with independent solutions effectively reduces the matrix size in solving the magnetohydrodynamic equilibrium problem. The reduction of the matrix size is about an order of magnitude as compared with the conventional radially grid-based numerical schemes. Also, in this ATEQ numerical scheme, no matter how accuracy in the radial direction is imposed, the size of matrices basically does not change. The small matrix size scheme gives ATEQ more flexibility to address the requirement of the number of Fourier components in the poloidal direction in tough equilibrium problems. These two unique features, the adaptive shooting and small matrix size, make ATEQ useful to improve tokamak equilibrium solutions.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗